Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G193400 Theobroma cacao HOM05D002092 ORTHO05D007041 1.8e-99 365.9 181 100.0
COL.COLO4_34508 Corchorus olitorius HOM05D002092 ORTHO05D007041 7.8e-39 164.5 150 60.0
Duzib212G0591 Durio zibethinus HOM05D002092 ORTHO05D007041 1.3e-38 163.7 150 60.0
Thecc.04G313900 Theobroma cacao HOM05D002092 ORTHO05D007041 1.3e-38 163.7 150 60.7
CSS0002469 Camellia sinensis var. sinensis HOM05D002092 ORTHO05D007041 2.3e-38 162.9 150 59.3
Gohir.A02G059000 Gossypium hirsutum HOM05D002092 ORTHO05D007041 3.9e-38 162.2 150 58.7
Gohir.D02G064700 Gossypium hirsutum HOM05D002092 ORTHO05D007041 3.9e-38 162.2 150 58.7
Gorai.005G073300 Gossypium raimondii HOM05D002092 ORTHO05D007041 3.9e-38 162.2 150 58.7
Actinidia18512 Actinidia chinensis HOM05D002092 ORTHO05D007041 8.6e-38 161.0 150 58.7
Cpa.g.sc146.15 Carica papaya HOM05D002092 ORTHO05D007041 1.1e-37 160.6 150 59.3
Hma1.2p1_2234F.1_g317640 Hydrangea macrophylla HOM05D002092 ORTHO05D007041 1.1e-37 160.6 150 59.3
MD16G1135200 Malus domestica HOM05D002092 ORTHO05D007041 1.1e-37 160.6 151 58.3
Hma1.2p1_1449F.1_g284065 Hydrangea macrophylla HOM05D002092 ORTHO05D007041 1.5e-37 160.2 150 59.3
Atru.chr4.3168 Acer truncatum HOM05D002092 ORTHO05D007041 1.9e-37 159.8 150 58.7
Phvul.003G122300 Phaseolus vulgaris HOM05D002092 ORTHO05D007041 2.5e-37 159.5 150 57.3
arahy.Tifrunner.gnm1.ann1.GJZ8MD Arachis hypogaea HOM05D002092 ORTHO05D007041 4.3e-37 158.7 150 58.0
Migut.G00901 Erythranthe guttata HOM05D002092 ORTHO05D007041 4.3e-37 158.7 150 58.0
SGA_v2.0_scaffold157G37393 Striga asiatica HOM05D002092 ORTHO05D007041 4.3e-37 158.7 153 55.6
Dinv01476 Davidia involucrata HOM05D002092 ORTHO05D007041 5.6e-37 158.3 150 58.7
Manes.03G212300 Manihot esculenta HOM05D002092 ORTHO05D007041 5.6e-37 158.3 150 58.0
Prupe.1G104500 Prunus persica HOM05D002092 ORTHO05D007041 5.6e-37 158.3 151 58.3
Lj4g0022953 Lotus japonicus HOM05D002092 ORTHO05D007041 9.5e-37 157.5 150 56.7
MELO3C021226.2 Cucumis melo HOM05D002092 ORTHO05D007041 1.2e-36 157.1 149 58.4
Ca_21373_v3 Cicer arietinum L. HOM05D002092 ORTHO05D007041 1.6e-36 156.8 150 56.7
Medtr4g123980 Medicago truncatula HOM05D002092 ORTHO05D007041 1.6e-36 156.8 150 56.7
THA.LOC104818932 Tarenaya hassleriana HOM05D002092 ORTHO05D007041 1.6e-36 156.8 139 59.7
VMungo1215G0636 Vigna mungo HOM05D002092 ORTHO05D007041 1.6e-36 156.8 149 57.7
arahy.Tifrunner.gnm1.ann1.06DG1T Arachis hypogaea HOM05D002092 ORTHO05D007041 2.1e-36 156.4 150 58.0
A06p38670 Brassica napus HOM05D002092 ORTHO05D007041 2.1e-36 156.4 139 59.7
Migut.C00318 Erythranthe guttata HOM05D002092 ORTHO05D007041 2.1e-36 156.4 150 57.3
Thhalv10003802m.g Eutrema salsugineum HOM05D002092 ORTHO05D007041 2.1e-36 156.4 139 59.7
SalBow8G4005 Salvia bowleyana HOM05D002092 ORTHO05D007041 2.1e-36 156.4 150 57.3
BcaB07g34209 Brassica carinata HOM05D002092 ORTHO05D007041 2.8e-36 156.0 139 59.7
Carub.0008s0871 Capsella rubella HOM05D002092 ORTHO05D007041 2.8e-36 156.0 139 59.7
CsaV3_6G000280 Cucumis sativus L. HOM05D002092 ORTHO05D007041 3.6e-36 155.6 149 57.7
AL8G22200 Arabidopsis lyrata HOM05D002092 ORTHO05D007041 4.7e-36 155.2 139 59.7
AT5G48960 Arabidopsis thaliana HOM05D002092 ORTHO05D007041 4.7e-36 155.2 139 59.7
Sp2g19340 Schrenkiella parvula HOM05D002092 ORTHO05D007041 4.7e-36 155.2 139 59.7
Sed0019064 Sechium edule HOM05D002092 ORTHO05D007041 4.7e-36 155.2 149 57.7
CiPaw.01G128500 Carya illinoinensis HOM05D002092 ORTHO05D007041 6.1e-36 154.8 149 57.0
BcaC03g17690 Brassica carinata HOM05D002092 ORTHO05D007041 8.0e-36 154.5 139 59.0
A02p37830 Brassica napus HOM05D002092 ORTHO05D007041 8.0e-36 154.5 139 59.0
C02p56990 Brassica napus HOM05D002092 ORTHO05D007041 8.0e-36 154.5 139 59.0
C07p39590 Brassica napus HOM05D002092 ORTHO05D007041 8.0e-36 154.5 139 59.0
BolC2t11769H Brassica oleracea HOM05D002092 ORTHO05D007041 8.0e-36 154.5 139 59.0
BraA02t08765Z Brassica rapa HOM05D002092 ORTHO05D007041 8.0e-36 154.5 139 59.0
BraA06t26781Z Brassica rapa HOM05D002092 ORTHO05D007041 8.0e-36 154.5 139 59.0
CARHR284570 Cardamine hirsuta HOM05D002092 ORTHO05D007041 8.0e-36 154.5 139 59.7
AUR62023651 Chenopodium quinoa HOM05D002092 ORTHO05D007041 1.0e-35 154.1 150 56.0
Ciclev10004546m.g Citrus clementina HOM05D002092 ORTHO05D007041 1.0e-35 154.1 150 56.7
Lalb_Chr07g0181631 Lupinus albus HOM05D002092 ORTHO05D007041 1.0e-35 154.1 149 57.0
RcHm_v2.0_Chr4g0427701 Rosa chinensis HOM05D002092 ORTHO05D007041 1.0e-35 154.1 151 57.0
MD13G1140600 Malus domestica HOM05D002092 ORTHO05D007041 1.4e-35 153.7 150 55.3
TAR633G1005 Trochodendron aralioides HOM05D002092 ORTHO05D007041 1.4e-35 153.7 149 55.7
ClCG06G004150 Citrullus lanatus HOM05D002092 ORTHO05D007041 1.8e-35 153.3 149 57.0
FvH4_4g21590 Fragaria vesca HOM05D002092 ORTHO05D007041 1.8e-35 153.3 151 57.0
BcaC06g30737 Brassica carinata HOM05D002092 ORTHO05D007041 2.3e-35 152.9 139 59.7
BolC7t44483H Brassica oleracea HOM05D002092 ORTHO05D007041 2.3e-35 152.9 139 59.7
TPR.G12594 Trifolium pratense HOM05D002092 ORTHO05D007041 2.3e-35 152.9 150 55.3
Nn4g25366 Nelumbo nucifera HOM05D002092 ORTHO05D007041 3.1e-35 152.5 138 58.0
VMungo1309G2400 Vigna mungo HOM05D002092 ORTHO05D007041 3.1e-35 152.5 138 55.1
Prupe.1G104000 Prunus persica HOM05D002092 ORTHO05D007041 4.0e-35 152.1 150 56.0
THA.LOC104827346 Tarenaya hassleriana HOM05D002092 ORTHO05D007041 4.0e-35 152.1 139 59.0
GSVIVG01017695001 Vitis vinifera HOM05D002092 ORTHO05D007041 4.0e-35 152.1 149 56.4
CiPaw.02G068900 Carya illinoinensis HOM05D002092 ORTHO05D007041 5.2e-35 151.8 150 56.0
Cc03_g00070 Coffea canephora HOM05D002092 ORTHO05D007041 5.2e-35 151.8 149 56.4
Lalb_Chr12g0200551 Lupinus albus HOM05D002092 ORTHO05D007041 5.2e-35 151.8 150 56.0
MSTRG.10185 Avicennia marina HOM05D002092 ORTHO05D007041 8.9e-35 151.0 150 55.3
Psat4g021200 Pisum sativum HOM05D002092 ORTHO05D007041 8.9e-35 151.0 150 55.3
ECA246G4720 Erigeron canadensis HOM05D002092 ORTHO05D007041 1.2e-34 150.6 149 57.0
FAN12G0996 Fragaria x ananassa HOM05D002092 ORTHO05D007041 1.2e-34 150.6 163 53.4
CDE02G3170 Ceratophyllum demersum HOM05D002092 ORTHO05D007041 1.5e-34 150.2 138 54.3
FAN17G1215 Fragaria x ananassa HOM05D002092 ORTHO05D007041 1.5e-34 150.2 163 52.8
HPP92_001181 Vanilla planifolia HOM05D002092 ORTHO05D007041 2.0e-34 149.8 150 52.7
Nitab4.5_0000978g0080 Nicotiana tabacum HOM05D002092 ORTHO05D007041 2.6e-34 149.4 150 55.3
Nitab4.5_0002466g0050 Nicotiana tabacum HOM05D002092 ORTHO05D007041 2.6e-34 149.4 150 55.3
Oeu002202.1 Olea europaea HOM05D002092 ORTHO05D007041 2.6e-34 149.4 140 57.1
Potri.008G205900 Populus trichocarpa HOM05D002092 ORTHO05D007041 2.6e-34 149.4 150 54.7
PGR004G1753 Punica granatum HOM05D002092 ORTHO05D007041 2.6e-34 149.4 150 54.0
Aa31sc279G30 Aethionema arabicum HOM05D002092 ORTHO05D007041 3.4e-34 149.1 139 57.6
Phvul.009G220400 Phaseolus vulgaris HOM05D002092 ORTHO05D007041 3.4e-34 149.1 138 54.3
PSO761G0176 Papaver somniferum HOM05D002092 ORTHO05D007041 4.4e-34 148.7 149 53.0
Glyma.17G041100 Glycine max HOM05D002092 ORTHO05D007041 7.5e-34 147.9 150 56.7
Peaxi162Scf00323g00822 Petunia axillaris HOM05D002092 ORTHO05D007041 7.5e-34 147.9 150 54.7
Potri.010G002900 Populus trichocarpa HOM05D002092 ORTHO05D007041 7.5e-34 147.9 150 54.7
FAN07G0083 Fragaria x ananassa HOM05D002092 ORTHO05D007041 9.8e-34 147.5 163 52.1
Eucgr.H04128 Eucalyptus grandis HOM05D002092 ORTHO05D007041 1.3e-33 147.1 150 53.3
Sabra10G0002300 Salix brachista HOM05D002092 ORTHO05D007041 1.7e-33 146.7 153 54.2
CANSAT78G1398 Cannabis sativa HOM05D002092 ORTHO05D007041 2.2e-33 146.4 149 54.4
Glyma.15G187000 Glycine max HOM05D002092 ORTHO05D007041 2.2e-33 146.4 137 54.7
SEGI_14302 Sequoiadendron giganteum HOM05D002092 ORTHO05D007041 2.2e-33 146.4 149 52.3
PSO210G1155 Papaver somniferum HOM05D002092 ORTHO05D007041 2.9e-33 146.0 149 53.0
HanXRQChr05g0148981 Helianthus annuus HOM05D002092 ORTHO05D007041 3.7e-33 145.6 149 55.7
TAR636G2233 Trochodendron aralioides HOM05D001914 ORTHO05D007041 3.7e-33 145.6 148 54.7
Solyc12g098830.2 Solanum lycopersicum HOM05D002092 ORTHO05D007041 4.9e-33 145.2 150 54.0
Sopen12g033570 Solanum pennellii HOM05D002092 ORTHO05D007041 4.9e-33 145.2 150 54.0
Aqoxy2G02499 Aquilegia oxysepala HOM05D002092 ORTHO05D007041 6.4e-33 144.8 149 54.4
Os01g0250900 Oryza sativa ssp. japonica HOM05D002092 ORTHO05D007041 6.4e-33 144.8 149 51.0
Lsat_1_v5_gn_6_118301 Lactuca sativa HOM05D002092 ORTHO05D007041 8.3e-33 144.4 150 55.3
Glyma.13G119100 Glycine max HOM05D002092 ORTHO05D007041 1.9e-32 143.3 150 55.3
CAN.G484.114 Capsicum annuum HOM05D002092 ORTHO05D007041 2.4e-32 142.9 149 54.4
ATR0796G082 Amborella trichopoda HOM05D002092 ORTHO05D007041 4.1e-32 142.1 148 51.4
AUR62002541 Chenopodium quinoa HOM05D002092 ORTHO05D007041 3.5e-31 139.0 154 51.3
SMO118G0340 Selaginella moellendorffii HOM05D002092 ORTHO05D007041 3.5e-31 139.0 148 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1377 Anthoceros agrestis HOM05D002092 ORTHO05D007041 3.0e-30 136.0 148 50.0
Mapoly0044s0089 Marchantia polymorpha HOM05D002092 ORTHO05D007041 4.3e-29 132.1 149 47.7
Hund22644 Selenicereus undatus HOM05D002092 ORTHO05D007041 4.3e-29 132.1 132 54.5
Pp3c8_7530 Physcomitrium patens HOM05D002092 ORTHO05D007041 1.6e-28 130.2 149 47.7
Pp3c3_29260 Physcomitrium patens HOM05D002092 ORTHO05D007041 1.5e-26 123.6 148 44.6
Haze_00759 Corylus avellana HOM05D002092 ORTHO05D007041 1.7e-25 120.2 64 82.8
Lj6A702T45 Lonicera japonica HOM05D002092 ORTHO05D007041 1.7e-25 120.2 64 82.8
Sabra08G0149600 Salix brachista HOM05D002092 ORTHO05D007041 2.2e-25 119.8 64 81.2
Sc13g0008020 Simmondsia chinensis HOM05D002092 ORTHO05D007041 3.7e-25 119.0 130 51.5
Rhsim04G0249000 Rhododendron simsii HOM05D002092 ORTHO05D007041 4.9e-25 118.6 64 81.2
Rhsim04G0249600 Rhododendron simsii HOM05D002092 ORTHO05D007041 4.9e-25 118.6 64 81.2
Cfa015737 Carpinus fangiana HOM05D002092 ORTHO05D007041 8.3e-25 117.9 64 81.2
DCAR_023413 Daucus carota HOM05D002092 ORTHO05D007041 7.0e-24 114.8 63 81.0
QL06p014379 Quercus lobata HOM05D002092 ORTHO05D007041 7.0e-24 114.8 63 79.4
vmacro08015 Vaccinium macrocarpon HOM05D002092 ORTHO05D007041 7.0e-24 114.8 63 79.4
EL10Ac3g06236 Beta vulgaris HOM05D002092 ORTHO05D007041 2.1e-23 113.2 64 78.1
Zm00001eb333800 Zea mays HOM05D002092 ORTHO05D007041 8.6e-22 107.8 63 73.0
Zm00001eb219640 Zea mays HOM05D003182 ORTHO05D037811 2.3e-19 99.8 63 68.3
Cre13.g573150 Chlamydomonas reinhardtii HOM05D002092 ORTHO05D007041 4.0e-19 99.0 150 40.7
Actinidia01069 Actinidia chinensis HOM05D002092 ORTHO05D007041 5.1e-14 82.0 105 50.5
Zm00001eb219650 Zea mays HOM05D003182 ORTHO05D037811 3.1e-11 72.8 43 69.8
CBR_g36890 Chara braunii HOM05D002092 ORTHO05D007041 1.3e-09 67.4 43 67.4
Actinidia01068 Actinidia chinensis HOM05D002092 ORTHO05D023290 9.3e-08 61.2 31 83.9
Cc06_g14400 Coffea canephora HOM05D006613 ORTHO05D008365 1.6e-07 60.5 94 35.1
DCAR_017934 Daucus carota HOM05D006613 ORTHO05D008365 2.1e-07 60.1 61 42.6
Dinv41319 Davidia involucrata HOM05D006613 ORTHO05D008365 6.0e-07 58.5 61 42.6
Lj9A726G34 Lonicera japonica HOM05D006613 ORTHO05D008365 6.0e-07 58.5 94 35.1
Rhsim03G0261500 Rhododendron simsii HOM05D006613 ORTHO05D008365 6.0e-07 58.5 60 45.0
Carub.0004s0304 Capsella rubella HOM05D006613 ORTHO05D008365 7.8e-07 58.2 61 42.6
QL02p094660 Quercus lobata HOM05D006613 ORTHO05D008365 7.8e-07 58.2 61 42.6
unitig_899.g15469 Utricularia gibba HOM05D006613 ORTHO05D008365 7.8e-07 58.2 61 44.3
Potri.018G100600 Populus trichocarpa HOM05D006613 ORTHO05D008365 1.0e-06 57.8 108 34.3
PSO017G4403 Papaver somniferum HOM05D006613 ORTHO05D008365 1.3e-06 57.4 61 39.3
PSO170G6875 Papaver somniferum HOM05D006613 ORTHO05D008365 1.3e-06 57.4 61 39.3
THA.LOC104803527 Tarenaya hassleriana HOM05D006613 ORTHO05D008365 1.3e-06 57.4 61 42.6
Aa31LG7G13040 Aethionema arabicum HOM05D006613 ORTHO05D008365 1.7e-06 57.0 98 30.6
Aqoxy7G02504 Aquilegia oxysepala HOM05D006613 ORTHO05D008365 1.7e-06 57.0 107 30.8
AL4G13910 Arabidopsis lyrata HOM05D006613 ORTHO05D008365 1.7e-06 57.0 61 42.6
MSTRG.26248 Avicennia marina HOM05D006613 ORTHO05D008365 1.7e-06 57.0 61 39.3
BcaB06g27943 Brassica carinata HOM05D006613 ORTHO05D008365 1.7e-06 57.0 61 41.0
BcaC02g08526 Brassica carinata HOM05D006613 ORTHO05D008365 1.7e-06 57.0 61 41.0
A04p18240 Brassica napus HOM05D000338 ORTHO05D008365 1.7e-06 57.0 61 41.0
C04p53410 Brassica napus HOM05D000338 ORTHO05D008365 1.7e-06 57.0 61 41.0
BolC4t26895H Brassica oleracea HOM05D006613 ORTHO05D008365 1.7e-06 57.0 61 41.0
BraA04t17437Z Brassica rapa HOM05D000338 ORTHO05D008365 1.7e-06 57.0 61 41.0
COL.COLO4_36423 Corchorus olitorius HOM05D006613 ORTHO05D008365 1.7e-06 57.0 61 41.0
Thhalv10000110m.g Eutrema salsugineum HOM05D006613 ORTHO05D008365 1.7e-06 57.0 61 41.0
PGR142G1911 Punica granatum HOM05D006613 ORTHO05D008365 1.7e-06 57.0 61 37.7
FAN22G1187 Fragaria x ananassa HOM05D006613 ORTHO05D008365 2.3e-06 56.6 61 39.3
Peaxi162Scf00038g00120 Petunia axillaris HOM05D006613 ORTHO05D008365 2.3e-06 56.6 61 37.7
TWI32G0120 Tripterygium wilfordii HOM05D006613 ORTHO05D008365 2.3e-06 56.6 61 41.0
Migut.K00287 Erythranthe guttata HOM05D006613 ORTHO05D008365 3.0e-06 56.2 61 39.3
FvH4_4g08620 Fragaria vesca HOM05D006613 ORTHO05D008365 3.0e-06 56.2 61 39.3
Sp4g02790 Schrenkiella parvula HOM05D006613 ORTHO05D008365 3.0e-06 56.2 61 39.3
Solyc07g006190.3 Solanum lycopersicum HOM05D006613 ORTHO05D008365 3.0e-06 56.2 61 39.3
Sopen07g002300 Solanum pennellii HOM05D006613 ORTHO05D008365 3.0e-06 56.2 61 39.3
Zm00001eb313430 Zea mays HOM05D006613 ORTHO05D008365 3.0e-06 56.2 93 32.3
ClCG06G012760 Citrullus lanatus HOM05D006613 ORTHO05D008365 3.9e-06 55.8 59 39.0
Duzib168G2165 Durio zibethinus HOM05D006613 ORTHO05D008365 3.9e-06 55.8 61 39.3
HanXRQChr05g0140041 Helianthus annuus HOM05D006613 ORTHO05D008365 3.9e-06 55.8 93 33.3
Sed0024845 Sechium edule HOM05D006613 ORTHO05D008365 3.9e-06 55.8 59 39.0
MELO3C010187.2 Cucumis melo HOM05D006613 ORTHO05D008365 5.1e-06 55.5 59 39.0
CsaV3_1G029300 Cucumis sativus L. HOM05D006613 ORTHO05D008365 5.1e-06 55.5 59 39.0
RcHm_v2.0_Chr4g0405151 Rosa chinensis HOM05D006613 ORTHO05D008365 5.1e-06 55.5 61 39.3
SGA_v2.0_scaffold12G06035 Striga asiatica HOM05D006613 ORTHO05D008365 5.1e-06 55.5 61 41.0
Actinidia33311 Actinidia chinensis HOM05D006613 ORTHO05D008365 6.6e-06 55.1 60 41.7
ATR0580G109 Amborella trichopoda HOM05D006613 ORTHO05D008365 6.6e-06 55.1 93 31.2
AT2G23890 Arabidopsis thaliana HOM05D006613 ORTHO05D008365 6.6e-06 55.1 61 41.0
ECA236G0084 Erigeron canadensis HOM05D006613 ORTHO05D008365 6.6e-06 55.1 93 32.3
Lsat_1_v5_gn_8_64200 Lactuca sativa HOM05D006613 ORTHO05D008365 6.6e-06 55.1 61 39.3
Nitab4.5_0001427g0020 Nicotiana tabacum HOM05D006613 ORTHO05D008365 6.6e-06 55.1 61 39.3
Nitab4.5_0003269g0030 Nicotiana tabacum HOM05D006613 ORTHO05D008365 6.6e-06 55.1 61 39.3
SalBow1G6770 Salvia bowleyana HOM05D006613 ORTHO05D008365 6.6e-06 55.1 61 37.7
Atru.chr7.426 Acer truncatum HOM05D006613 ORTHO05D008365 8.7e-06 54.7 61 39.3
CARHR184860 Cardamine hirsuta HOM05D006613 ORTHO05D008365 8.7e-06 54.7 61 39.3
MBI14_g41535_MAGBIO Magnolia biondii HOM05D006613 ORTHO05D008365 8.7e-06 54.7 61 39.3
Manes.09G001200 Manihot esculenta HOM05D006613 ORTHO05D008365 8.7e-06 54.7 61 41.0
Psat0s3878g0120 Pisum sativum HOM05D006613 ORTHO05D008365 8.7e-06 54.7 93 32.3


User provided reference genes

Program Settings