Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G192000 Theobroma cacao HOM05D006260 ORTHO05D007860 1.8e-88 329.3 176 100.0
COL.COLO4_14462 Corchorus olitorius HOM05D006260 ORTHO05D007860 7.5e-79 297.4 176 89.8
Gohir.A05G409000 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.3e-78 296.6 176 88.6
Gohir.D04G006400 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.7e-78 296.2 176 88.1
Gorai.012G007800 Gossypium raimondii HOM05D006260 ORTHO05D007860 1.7e-78 296.2 176 88.1
Gohir.D04G006600 Gossypium hirsutum HOM05D006260 ORTHO05D007860 4.8e-78 294.7 176 87.5
Gorai.012G008000 Gossypium raimondii HOM05D006260 ORTHO05D007860 4.8e-78 294.7 176 87.5
Gohir.A05G408800 Gossypium hirsutum HOM05D006260 ORTHO05D007860 8.2e-78 293.9 176 88.1
Potri.006G072600 Populus trichocarpa HOM05D006260 ORTHO05D007860 8.0e-73 277.3 176 81.2
TWI38G0675 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 6.8e-72 274.2 177 83.1
Atru.chr7.896 Acer truncatum HOM05D006260 ORTHO05D007860 1.2e-71 273.5 176 83.0
TWI63G0540 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 1.5e-71 273.1 176 82.4
Sp7g27680 Schrenkiella parvula HOM05D006260 ORTHO05D007860 2.6e-71 272.3 177 79.7
AL7G22380 Arabidopsis lyrata HOM05D006260 ORTHO05D007860 3.4e-71 271.9 176 81.8
Thhalv10026375m.g Eutrema salsugineum HOM05D006260 ORTHO05D007860 3.4e-71 271.9 177 80.2
AT4G29870 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 5.7e-71 271.2 176 81.8
ClCG06G013810 Citrullus lanatus HOM05D006260 ORTHO05D007860 5.7e-71 271.2 177 80.2
Potri.018G139600 Populus trichocarpa HOM05D006260 ORTHO05D007860 9.8e-71 270.4 177 79.1
CARHR237780 Cardamine hirsuta HOM05D006260 ORTHO05D007860 1.7e-70 269.6 177 79.7
Ciclev10009690m.g Citrus clementina HOM05D006260 ORTHO05D007860 1.7e-70 269.6 176 81.8
C01p09330 Brassica napus HOM05D006260 ORTHO05D007860 2.8e-70 268.9 176 78.4
BolC1t00921H Brassica oleracea HOM05D006260 ORTHO05D007860 2.8e-70 268.9 176 78.4
Aa31LG2G20680 Aethionema arabicum HOM05D006260 ORTHO05D007860 3.7e-70 268.5 175 78.9
Eucgr.C00083 Eucalyptus grandis HOM05D006260 ORTHO05D007860 3.7e-70 268.5 174 80.5
A01p08290 Brassica napus HOM05D006260 ORTHO05D007860 4.8e-70 268.1 176 77.3
BraA01t00777Z Brassica rapa HOM05D006260 ORTHO05D007860 4.8e-70 268.1 176 77.3
Carub.0004s1476 Capsella rubella HOM05D006260 ORTHO05D007860 4.8e-70 268.1 178 79.8
CiPaw.08G031300 Carya illinoinensis HOM05D006260 ORTHO05D007860 6.3e-70 267.7 176 77.8
MELO3C017413.2 Cucumis melo HOM05D006260 ORTHO05D007860 1.1e-69 266.9 177 78.5
Manes.14G161300 Manihot esculenta HOM05D006260 ORTHO05D007860 1.8e-69 266.2 170 81.8
Lj5A659T18 Lonicera japonica HOM05D006260 ORTHO05D007860 2.4e-69 265.8 176 79.0
Haze_22050 Corylus avellana HOM05D006260 ORTHO05D007860 3.1e-69 265.4 176 77.3
CsaV3_1G032030 Cucumis sativus L. HOM05D006260 ORTHO05D007860 3.1e-69 265.4 177 78.0
Carub.0003s3356 Capsella rubella HOM05D006260 ORTHO05D007860 4.1e-69 265.0 177 76.3
PGR018G0003 Punica granatum HOM05D006260 ORTHO05D007860 4.1e-69 265.0 180 76.7
PGR142G0891 Punica granatum HOM05D006260 ORTHO05D007860 4.1e-69 265.0 180 76.7
PGR142G1877 Punica granatum HOM05D006260 ORTHO05D007860 4.1e-69 265.0 180 76.7
CANSAT11G1813 Cannabis sativa HOM05D006260 ORTHO05D007860 5.4e-69 264.6 174 79.9
vmacro20799 Vaccinium macrocarpon HOM05D006260 ORTHO05D007860 5.4e-69 264.6 176 77.8
FvH4_4g06900 Fragaria vesca HOM05D006260 ORTHO05D007860 7.0e-69 264.2 178 78.1
MBI14_g10729_MAGBIO Magnolia biondii HOM05D006260 ORTHO05D007860 7.0e-69 264.2 176 78.4
A03p59290 Brassica napus HOM05D006260 ORTHO05D007860 1.2e-68 263.5 176 75.6
Glyma.15G167900 Glycine max HOM05D006260 ORTHO05D007860 1.6e-68 263.1 160 83.1
GSVIVG01029271001 Vitis vinifera HOM05D006260 ORTHO05D007860 1.6e-68 263.1 176 79.5
CANSAT21G0469 Cannabis sativa HOM05D006260 ORTHO05D007860 2.0e-68 262.7 174 78.7
Cc05_g06400 Coffea canephora HOM05D006260 ORTHO05D007860 2.0e-68 262.7 176 78.4
BraA03t14986Z Brassica rapa HOM05D006260 ORTHO05D007860 4.5e-68 261.5 176 75.0
MSTRG.19359 Avicennia marina HOM05D006260 ORTHO05D007860 5.9e-68 261.2 170 81.8
C07p57300 Brassica napus HOM05D006260 ORTHO05D007860 5.9e-68 261.2 176 75.0
Prupe.1G072000 Prunus persica HOM05D006260 ORTHO05D007860 5.9e-68 261.2 179 78.2
Lalb_Chr23g0276701 Lupinus albus HOM05D006260 ORTHO05D007860 7.7e-68 260.8 179 77.7
MD16G1245000 Malus domestica HOM05D006260 ORTHO05D007860 7.7e-68 260.8 176 79.0
CARHR109790 Cardamine hirsuta HOM05D006260 ORTHO05D007860 1.0e-67 260.4 177 75.1
Glyma.09G061600 Glycine max HOM05D006260 ORTHO05D007860 1.0e-67 260.4 161 82.0
Sed0022699 Sechium edule HOM05D006260 ORTHO05D007860 1.0e-67 260.4 178 75.3
BolC7t46199H Brassica oleracea HOM05D006260 ORTHO05D007860 1.3e-67 260.0 176 75.0
RcHm_v2.0_Chr4g0398801 Rosa chinensis HOM05D006260 ORTHO05D007860 1.3e-67 260.0 177 78.0
Rhsim01G0114100 Rhododendron simsii HOM05D006260 ORTHO05D007860 2.3e-67 259.2 179 77.1
Solyc05g006080.1 Solanum lycopersicum HOM05D006260 ORTHO05D007860 3.8e-67 258.5 179 76.5
Sopen05g002100 Solanum pennellii HOM05D006260 ORTHO05D007860 3.8e-67 258.5 179 76.5
FAN07G2370 Fragaria x ananassa HOM05D006260 ORTHO05D007860 6.5e-67 257.7 177 76.8
FAN12G1915 Fragaria x ananassa HOM05D006260 ORTHO05D007860 6.5e-67 257.7 177 76.8
Lj5A660T21 Lonicera japonica HOM05D006260 ORTHO05D007860 6.5e-67 257.7 176 77.8
Lj5A667T13 Lonicera japonica HOM05D006260 ORTHO05D007860 6.5e-67 257.7 176 77.8
FAN22G1136 Fragaria x ananassa HOM05D006260 ORTHO05D007860 8.6e-67 257.3 173 78.0
Phvul.009G234400 Phaseolus vulgaris HOM05D006260 ORTHO05D007860 8.6e-67 257.3 175 77.7
MD16G1244900 Malus domestica HOM05D006260 ORTHO05D007860 1.5e-66 256.5 177 76.8
Oeu012389.1 Olea europaea HOM05D006260 ORTHO05D007860 1.9e-66 256.1 181 75.7
PGSC0003DMG400015598 Solanum tuberosum HOM05D006260 ORTHO05D007860 1.9e-66 256.1 179 76.0
Psat1g142480 Pisum sativum HOM05D006260 ORTHO05D007860 2.5e-66 255.8 176 75.6
SGA_v2.0_scaffold31G12783 Striga asiatica HOM05D006260 ORTHO05D007860 2.5e-66 255.8 168 78.0
Oeu043898.1 Olea europaea HOM05D006260 ORTHO05D007860 4.2e-66 255.0 179 75.4
TPR.G2550 Trifolium pratense HOM05D006260 ORTHO05D007860 5.5e-66 254.6 169 76.9
Migut.J00776 Erythranthe guttata HOM05D006260 ORTHO05D007860 9.5e-66 253.8 170 77.1
SalBow3G0163 Salvia bowleyana HOM05D006260 ORTHO05D007860 9.5e-66 253.8 168 81.0
CSS0028862 Camellia sinensis var. sinensis HOM05D006260 ORTHO05D007860 1.2e-65 253.4 178 74.2
Ah.14g085330 Amaranthus hybridus HOM05D006260 ORTHO05D007860 1.6e-65 253.1 177 76.8
AT2G19340 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 4.7e-65 251.5 163 77.9
CAN.G1341.6 Capsicum annuum HOM05D006260 ORTHO05D007860 6.1e-65 251.1 173 75.7
Nitab4.5_0000257g0210 Nicotiana tabacum HOM05D006260 ORTHO05D007860 8.0e-65 250.8 179 73.2
Manes.06G017400 Manihot esculenta HOM05D006260 ORTHO05D007860 1.4e-64 250.0 154 83.1
unitig_8.g4053 Utricularia gibba HOM05D006260 ORTHO05D007860 1.4e-64 250.0 168 78.0
Medtr2g038390 Medicago truncatula HOM05D006260 ORTHO05D007860 2.3e-64 249.2 174 73.6
Nitab4.5_0009368g0010 Nicotiana tabacum HOM05D006260 ORTHO05D007860 3.0e-64 248.8 179 72.6
Lj6g0019941 Lotus japonicus HOM05D006260 ORTHO05D007860 4.0e-64 248.4 178 72.5
Lsat_1_v5_gn_7_55181 Lactuca sativa HOM05D006260 ORTHO05D007860 6.8e-64 247.7 153 80.4
Ca_02129_v3 Cicer arietinum L. HOM05D006260 ORTHO05D007860 1.2e-63 246.9 151 81.5
ATR0580G108 Amborella trichopoda HOM05D006260 ORTHO05D007860 2.6e-63 245.7 176 71.6
SHI03067 Sapria himalayana HOM05D006260 ORTHO05D007860 4.4e-63 245.0 176 75.6
Ah.09g228540 Amaranthus hybridus HOM05D006260 ORTHO05D007860 5.7e-63 244.6 178 73.6
Hma1.2p1_0478F.1_g161140 Hydrangea macrophylla HOM05D006260 ORTHO05D007860 5.7e-63 244.6 176 71.6
DCAR_018008 Daucus carota HOM05D006260 ORTHO05D007860 9.8e-63 243.8 153 82.4
Zm00001eb169590 Zea mays HOM05D006260 ORTHO05D007860 1.3e-62 243.4 176 70.5
CDE07G0891 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 1.7e-62 243.0 153 78.4
SGA_v2.0_scaffold112G31634 Striga asiatica HOM05D006260 ORTHO05D007860 1.7e-62 243.0 151 80.1
AUR62027428 Chenopodium quinoa HOM05D006260 ORTHO05D007860 2.8e-62 242.3 147 83.7
HanXRQChr09g0245351 Helianthus annuus HOM05D006260 ORTHO05D007860 6.3e-62 241.1 153 78.4
TAR383G0359 Trochodendron aralioides HOM05D006260 ORTHO05D007860 3.1e-61 238.8 165 78.2
Peaxi162Scf00421g00071 Petunia axillaris HOM05D006260 ORTHO05D007860 2.0e-60 236.1 162 73.5
Sc18g0003820 Simmondsia chinensis HOM05D006260 ORTHO05D007860 2.7e-60 235.7 173 68.8
HPP92_027392 Vanilla planifolia HOM05D006260 ORTHO05D007860 7.8e-60 234.2 175 68.6
Zm00001eb112720 Zea mays HOM05D006260 ORTHO05D007860 1.3e-59 233.4 176 68.2
Aqoxy7G02900 Aquilegia oxysepala HOM05D006260 ORTHO05D007860 2.3e-59 232.6 175 70.9
CiPaw.07G199300 Carya illinoinensis HOM05D006260 ORTHO05D007860 1.1e-58 230.3 155 74.8
FAN17G2269 Fragaria x ananassa HOM05D006260 ORTHO05D007860 2.1e-57 226.1 155 76.8
QL02p064675 Quercus lobata HOM05D006260 ORTHO05D007860 9.8e-55 217.2 157 72.0
CDE06G1002 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 2.2e-54 216.1 137 76.6
Mapoly0039s0076 Marchantia polymorpha HOM05D006260 ORTHO05D007860 1.1e-53 213.8 152 73.0
Sed0019929 Sechium edule HOM05D006260 ORTHO05D007860 5.9e-52 208.0 145 73.8
Cpa.g.sc115.60 Carica papaya HOM05D006260 ORTHO05D007860 6.6e-51 204.5 118 89.0
Sabra06G0054000 Salix brachista HOM05D006260 ORTHO05D007860 1.5e-50 203.4 120 86.7
SMO329G0049 Selaginella moellendorffii HOM05D006260 ORTHO05D007860 1.5e-50 203.4 154 68.8
PSO170G1526 Papaver somniferum HOM05D006260 ORTHO05D007860 4.3e-50 201.8 131 77.9
CBR_g37526 Chara braunii HOM05D006260 ORTHO05D007860 9.5e-50 200.7 153 64.7
SEGI_37789 Sequoiadendron giganteum HOM05D006260 ORTHO05D007860 1.2e-49 200.3 169 63.3
TAR626G1894 Trochodendron aralioides HOM05D006260 ORTHO05D007860 8.9e-48 194.1 118 84.7
Sabra18G0114100 Salix brachista HOM05D006260 ORTHO05D007860 2.0e-47 193.0 108 91.7
AUR62031268 Chenopodium quinoa HOM05D006260 ORTHO05D007860 9.2e-45 184.1 107 86.0
ECA240G0773 Erigeron canadensis HOM05D006260 ORTHO05D007860 2.0e-44 183.0 121 76.9
AagrBONN_evm.TU.Sc2ySwM_362.1716 Anthoceros agrestis HOM05D006260 ORTHO05D007860 3.5e-44 182.2 152 60.5
EL10Ac8g19294 Beta vulgaris HOM05D006260 ORTHO05D007860 1.1e-42 177.2 107 83.2
BcaNung00497 Brassica carinata HOM05D006260 ORTHO05D007860 5.6e-42 174.9 128 73.4
Pp3c5_8110 Physcomitrium patens HOM05D006260 ORTHO05D007860 9.5e-42 174.1 131 63.4
Lj5C609T1 Lonicera japonica HOM05D006260 ORTHO05D007860 7.3e-34 147.9 91 80.2
Cre12.g528150 Chlamydomonas reinhardtii HOM05D006260 ORTHO05D007860 9.2e-29 131.0 132 47.7
TWI39G0723 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 9.0e-16 87.8 106 51.9
MD13G1241300 Malus domestica HOM05D006260 ORTHO05D249159 9.6e-10 67.8 118 43.2


User provided reference genes

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