Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 1.4e-113 412.9 204 100.0
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 2.8e-77 292.4 206 73.3
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 8.4e-74 280.8 211 73.0
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 4.6e-64 248.4 215 62.3
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 8.7e-63 244.2 215 61.4
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 1.9e-62 243.0 215 60.9
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 1.1e-46 190.7 232 50.9
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 4.2e-41 172.2 232 47.8
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 4.2e-41 172.2 229 45.0
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 3.7e-37 159.1 233 43.8
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 8.2e-37 157.9 217 47.5
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.1e-36 157.5 237 42.2
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 4.1e-36 155.6 228 46.9
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 9.0e-36 154.5 226 43.8
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.5e-35 153.7 244 41.8
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.0e-35 153.3 226 44.2
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 3.4e-35 152.5 226 44.2
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 5.0e-34 148.7 231 43.3
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 6.5e-34 148.3 237 41.4
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 8.5e-34 147.9 218 42.2
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.1e-33 147.5 226 42.9
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 1.1e-33 147.5 243 37.4
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.4e-33 147.1 237 40.5
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 3.2e-33 146.0 203 44.8
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 4.2e-33 145.6 226 42.9
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 5.5e-33 145.2 228 43.9
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 7.2e-33 144.8 249 40.2
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 9.4e-33 144.4 230 44.8
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 1.2e-32 144.1 232 39.2
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 1.6e-32 143.7 249 39.4
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 3.6e-32 142.5 253 38.7
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 3.6e-32 142.5 249 39.0
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.6e-32 142.5 241 38.2
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 4.6e-32 142.1 247 39.7
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 6.1e-32 141.7 244 38.1
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 7.9e-32 141.4 241 41.1
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 1.0e-31 141.0 225 43.6
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 1.8e-31 140.2 236 39.4
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.8e-31 140.2 237 38.4
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 2.3e-31 139.8 233 39.9
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 3.0e-31 139.4 248 39.9
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 5.1e-31 138.7 244 39.3
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 5.1e-31 138.7 236 39.8
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 5.1e-31 138.7 224 39.7
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 6.7e-31 138.3 245 37.6
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 8.8e-31 137.9 237 38.4
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 8.8e-31 137.9 222 39.6
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 1.1e-30 137.5 243 37.4
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 1.5e-30 137.1 257 38.9
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 2.0e-30 136.7 234 41.0
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 2.6e-30 136.3 238 39.5
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 2.6e-30 136.3 248 39.5
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 3.3e-30 136.0 240 38.3
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 5.7e-30 135.2 231 41.1
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 7.4e-30 134.8 247 40.9
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 1.7e-29 133.7 238 39.9
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 1.7e-29 133.7 238 39.9
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 6.3e-29 131.7 203 44.8
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 3.1e-28 129.4 227 36.6
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 4.1e-28 129.0 239 36.8
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 4.1e-28 129.0 220 40.0
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 6.9e-28 128.3 263 37.3
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 9.1e-28 127.9 251 37.8
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 9.1e-28 127.9 224 37.9
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 9.1e-28 127.9 214 43.5
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 2.6e-27 126.3 207 44.0
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 2.6e-27 126.3 244 37.3
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 2.6e-27 126.3 235 37.4
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 5.9e-27 125.2 239 38.5
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 1.0e-26 124.4 226 37.6
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 2.2e-26 123.2 199 43.2
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 3.8e-26 122.5 227 41.9
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 3.8e-26 122.5 229 41.5
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 6.5e-26 121.7 230 40.4
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 6.5e-26 121.7 242 39.3
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 6.5e-26 121.7 263 36.5
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 1.9e-25 120.2 242 36.8
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 2.5e-25 119.8 248 36.7
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 7.2e-25 118.2 244 35.7
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 7.2e-25 118.2 232 36.2
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 7.2e-25 118.2 223 37.7
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 7.2e-25 118.2 248 37.1
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.6e-24 117.1 241 34.4
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 2.7e-24 116.3 210 38.6
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 2.7e-24 116.3 237 35.9
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 3.6e-24 115.9 249 37.3
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 3.6e-24 115.9 215 39.5
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 4.7e-24 115.5 219 39.7
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 7.9e-24 114.8 216 39.4
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 1.4e-23 114.0 224 39.3
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 1.8e-23 113.6 210 38.1
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 3.9e-23 112.5 239 36.0
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 6.7e-23 111.7 230 38.3
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 6.7e-23 111.7 242 35.1
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 8.8e-23 111.3 217 37.8
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 1.1e-22 110.9 219 38.8
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.5e-22 110.5 170 41.2
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.5e-22 110.5 203 39.9
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 1.5e-22 110.5 226 38.9
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 2.0e-22 110.2 223 39.5
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 2.6e-22 109.8 204 39.7
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 7.4e-22 108.2 233 38.2
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 9.7e-22 107.8 244 32.4
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 2.2e-21 106.7 217 37.3
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 1.1e-20 104.4 202 38.6
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 9.1e-20 101.3 111 51.4
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 1.2e-19 100.9 225 35.6
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 1.2e-19 100.9 224 38.8
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 3.5e-19 99.4 236 36.0
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 4.5e-19 99.0 236 32.2
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 7.7e-19 98.2 191 35.6
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 1.9e-17 93.6 237 33.8
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 3.2e-17 92.8 215 34.9
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 5.5e-17 92.0 246 33.3
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 7.2e-17 91.7 239 33.1
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 1.6e-16 90.5 244 31.6
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 6.7e-15 85.1 213 33.8
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 6.7e-15 85.1 213 33.8
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 6.7e-15 85.1 213 33.8
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 4.4e-14 82.4 234 31.2
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 1.3e-13 80.9 107 42.1
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 2.8e-13 79.7 242 32.2
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 1.4e-12 77.4 107 39.3
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 1.4e-12 77.4 107 38.3
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 1.8e-12 77.0 213 32.9
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 4.1e-12 75.9 107 39.3
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 4.1e-12 75.9 223 29.6
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 4.1e-12 75.9 223 30.5
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 5.3e-12 75.5 235 30.2
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 2.7e-11 73.2 107 36.4
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 7.7e-11 71.6 107 38.3
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 1.0e-10 71.2 97 47.4
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 1.5e-09 67.4 236 27.5
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 2.5e-09 66.6 96 37.5
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 9.4e-09 64.7 239 28.5
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 3.6e-08 62.8 212 26.9
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 5.2e-07 58.9 213 27.7
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 6.8e-07 58.5 165 30.3
Glyma.04G077700 Glycine max HOM05D027503 ORTHO05D005506 8.8e-07 58.2 143 32.9
Peaxi162Scf00543g00012 Petunia axillaris HOM05D005081 ORTHO05D005506 1.5e-06 57.4 93 36.6
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 2.0e-06 57.0 161 26.7
Atru.chr7.2685 Acer truncatum HOM05D005081 ORTHO05D005506 5.7e-06 55.5 185 31.9


User provided reference genes

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