Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 3.0e-47 191.4 91 100.0
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 9.0e-44 179.9 91 92.3
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 3.4e-43 177.9 91 93.4
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 3.4e-43 177.9 91 91.2
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.9e-41 172.2 91 89.0
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 2.4e-41 171.8 91 87.9
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 7.1e-41 170.2 91 85.7
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 7.1e-41 170.2 89 86.5
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 1.2e-40 169.5 91 86.8
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 1.2e-40 169.5 89 85.4
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 4.6e-40 167.5 89 83.1
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.6e-40 167.5 91 84.6
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 4.6e-40 167.5 91 84.6
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 6.0e-40 167.2 91 85.7
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 7.9e-40 166.8 89 84.3
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 7.9e-40 166.8 91 84.6
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.3e-39 166.0 91 83.5
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.0e-39 164.9 91 81.3
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 5.1e-39 164.1 87 87.4
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 5.1e-39 164.1 87 87.4
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 5.1e-39 164.1 89 83.1
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 5.1e-39 164.1 91 83.5
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 6.7e-39 163.7 91 80.2
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 8.7e-39 163.3 91 83.5
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 1.1e-38 162.9 89 82.0
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 5.6e-38 160.6 89 82.0
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 7.4e-38 160.2 91 82.4
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 7.4e-38 160.2 88 80.7
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 7.4e-38 160.2 91 78.0
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 7.4e-38 160.2 90 81.1
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 7.4e-38 160.2 90 81.1
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 1.3e-37 159.5 89 84.3
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.6e-37 159.1 91 80.2
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 1.6e-37 159.1 88 80.7
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 2.8e-37 158.3 88 81.8
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 6.2e-37 157.1 91 79.1
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 6.2e-37 157.1 91 81.3
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 8.1e-37 156.8 91 81.3
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 1.1e-36 156.4 88 83.0
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 1.1e-36 156.4 88 79.5
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 1.4e-36 156.0 91 78.0
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 2.4e-36 155.2 91 80.2
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 9.0e-36 153.3 91 80.2
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 1.5e-35 152.5 88 76.1
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 7.6e-35 150.2 88 76.1
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 9.9e-35 149.8 89 77.5
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 9.9e-35 149.8 90 78.9
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 2.2e-34 148.7 90 77.8
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 2.9e-34 148.3 91 76.9
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 6.4e-34 147.1 87 75.9
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 6.4e-34 147.1 88 75.0
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 8.4e-34 146.7 89 75.3
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 8.4e-34 146.7 91 75.8
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 8.4e-34 146.7 91 75.8
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.4e-33 146.0 91 73.6
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 1.9e-33 145.6 89 74.2
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 4.2e-33 144.4 91 74.7
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 4.2e-33 144.4 90 75.6
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 5.5e-33 144.1 87 72.4
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 7.1e-33 143.7 91 72.5
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 9.3e-33 143.3 83 77.1
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 1.2e-32 142.9 88 72.7
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 2.7e-32 141.7 91 72.5
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 3.5e-32 141.4 87 73.6
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 3.5e-32 141.4 87 73.6
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 4.6e-32 141.0 91 75.8
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 7.9e-32 140.2 91 72.5
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 7.9e-32 140.2 87 72.4
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 1.0e-31 139.8 91 70.3
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 1.3e-31 139.4 88 71.6
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 1.8e-31 139.0 91 69.2
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 2.3e-31 138.7 88 73.9
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 3.0e-31 138.3 87 67.8
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 3.9e-31 137.9 91 72.5
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 5.1e-31 137.5 91 68.1
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 5.1e-31 137.5 91 69.2
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 5.1e-31 137.5 91 69.2
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 5.1e-31 137.5 91 69.2
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 5.1e-31 137.5 91 69.2
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 5.1e-31 137.5 91 69.2
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 5.1e-31 137.5 87 71.3
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 8.7e-31 136.7 91 70.3
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 1.1e-30 136.3 98 66.3
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.1e-30 136.3 91 71.4
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 1.5e-30 136.0 89 71.9
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 1.5e-30 136.0 91 70.3
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 1.9e-30 135.6 91 69.2
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 2.5e-30 135.2 89 71.9
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 2.5e-30 135.2 91 68.1
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.3e-30 134.8 89 69.7
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.3e-30 134.8 89 69.7
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.3e-30 134.8 89 69.7
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 5.6e-30 134.0 91 72.5
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 7.4e-30 133.7 91 70.3
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 7.4e-30 133.7 91 70.3
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 7.4e-30 133.7 91 70.3
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 7.4e-30 133.7 91 70.3
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 1.6e-29 132.5 88 68.2
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 1.6e-29 132.5 87 69.0
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 2.1e-29 132.1 89 68.5
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.8e-29 131.7 85 71.8
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.8e-29 131.7 82 72.0
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 8.2e-29 130.2 89 67.4
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.1e-28 129.8 92 67.4
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 1.1e-28 129.8 89 68.5
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.4e-28 129.4 87 67.8
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 1.4e-28 129.4 87 66.7
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.4e-28 129.4 88 69.3
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 1.8e-28 129.0 87 65.5
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 3.1e-28 128.3 89 66.3
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 3.1e-28 128.3 88 67.0
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 3.1e-28 128.3 88 67.0
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 4.0e-28 127.9 88 64.8
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 5.3e-28 127.5 91 65.9
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 5.3e-28 127.5 91 67.0
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 1.5e-27 125.9 87 66.7
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 5.8e-27 124.0 88 63.6
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 6.0e-24 114.0 90 62.2
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 7.9e-24 113.6 66 77.3
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.9e-22 109.0 62 79.0
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 5.3e-20 100.9 85 56.5
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 3.4e-19 98.2 96 51.0
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 1.0e-18 96.7 75 60.0
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.4e-17 92.8 62 64.5
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 5.5e-17 90.9 57 70.2
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 7.2e-17 90.5 90 54.4
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.2e-16 89.7 62 62.9
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 1.5e-14 82.8 85 44.7
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 4.3e-14 81.3 78 55.1
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 1.3e-13 79.7 57 63.2
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 1.3e-13 79.7 57 63.2
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.0e-11 72.4 45 71.1
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 2.6e-11 72.0 56 57.1
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 5.9e-11 70.9 44 68.2
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 5.0e-10 67.8 99 38.4
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.9e-09 65.9 84 45.2
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.9e-09 65.9 84 45.2
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 4.2e-09 64.7 71 45.1
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 4.2e-09 64.7 71 45.1
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 9.4e-09 63.5 91 40.7
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 1.6e-08 62.8 94 40.4
Mapoly0011s0061 Marchantia polymorpha HOM05D004945 ORTHO05D005536 1.6e-08 62.8 81 39.5
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.8e-07 59.3 82 32.9
Dinv24096 Davidia involucrata HOM05D019947 ORTHO05D005536 3.9e-07 58.2 43 58.1
Dinv44937 Davidia involucrata HOM05D004945 ORTHO05D005536 3.9e-07 58.2 43 58.1
MCO09G227 Micromonas commoda HOM05D004945 ORTHO05D005536 8.8e-07 57.0 89 33.7
AagrBONN_evm.TU.Sc2ySwM_228.1937 Anthoceros agrestis HOM05D004945 ORTHO05D005536 5.7e-06 54.3 70 35.7


User provided reference genes

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