Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 3.2e-151 538.5 294 100.0
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 2.7e-126 455.7 294 82.7
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 2.3e-125 452.6 294 82.3
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 5.9e-121 438.0 273 84.6
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.5e-119 433.3 297 79.1
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 1.5e-119 433.3 297 79.1
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 4.0e-117 425.2 297 78.5
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 1.7e-104 383.3 300 71.3
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 8.9e-101 370.9 303 69.6
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 3.7e-99 365.5 303 69.0
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 2.0e-97 359.8 311 65.0
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 1.0e-96 357.5 304 70.4
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 8.6e-96 354.4 303 66.0
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 1.4e-93 347.1 286 67.8
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.8e-93 346.7 296 70.3
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 9.8e-92 340.9 301 67.8
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 9.8e-92 340.9 303 67.7
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 2.4e-90 336.3 293 66.6
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 3.2e-90 335.9 298 70.5
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 7.0e-90 334.7 298 65.4
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 4.6e-89 332.0 279 67.7
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 4.6e-89 332.0 302 67.5
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 1.0e-88 330.9 284 67.3
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 1.5e-87 327.0 301 64.8
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 1.9e-87 326.6 300 63.3
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 2.5e-87 326.2 297 65.7
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 1.2e-86 323.9 306 65.4
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 1.2e-86 323.9 286 64.3
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 2.1e-86 323.2 296 65.2
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 6.2e-86 321.6 302 63.2
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 6.2e-86 321.6 302 61.6
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 8.1e-86 321.2 300 69.0
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 3.1e-85 319.3 301 61.8
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 4.4e-84 315.5 303 60.4
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.7e-83 313.5 303 60.1
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 1.7e-83 313.5 287 64.8
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 1.7e-83 313.5 262 67.6
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 4.9e-83 312.0 287 61.7
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 8.3e-83 311.2 300 63.3
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 8.3e-83 311.2 300 63.3
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 7.1e-82 308.1 302 66.2
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 7.1e-82 308.1 302 66.2
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 1.6e-81 307.0 304 59.9
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 2.1e-81 306.6 299 59.9
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 2.1e-81 306.6 280 65.7
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 2.7e-81 306.2 301 65.4
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 3.5e-81 305.8 307 59.6
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 3.5e-81 305.8 298 60.1
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 4.6e-81 305.4 398 50.3
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 6.0e-81 305.1 268 61.9
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 6.0e-81 305.1 322 57.5
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 6.0e-81 305.1 294 59.2
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 7.3e-79 298.1 288 60.4
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 9.5e-79 297.7 306 57.2
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.6e-78 297.0 307 58.0
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 2.8e-78 296.2 282 63.5
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 3.6e-78 295.8 306 57.5
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 4.7e-78 295.4 297 62.6
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 4.7e-78 295.4 296 57.8
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 8.1e-78 294.7 290 57.2
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 8.1e-78 294.7 300 58.0
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 8.1e-78 294.7 306 57.2
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 3.1e-77 292.7 285 62.8
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 6.8e-77 291.6 294 57.5
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 6.8e-77 291.6 298 60.4
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 8.9e-77 291.2 302 64.9
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 1.2e-76 290.8 310 59.7
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.5e-76 290.4 309 55.7
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.0e-76 290.0 302 60.3
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 2.6e-76 289.7 301 60.8
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 3.8e-75 285.8 274 60.2
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 3.8e-75 285.8 308 57.1
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 6.4e-75 285.0 307 56.0
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 6.4e-75 285.0 278 61.2
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 1.1e-74 284.3 302 59.3
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 1.9e-74 283.5 261 62.5
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 3.2e-74 282.7 260 62.7
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 9.2e-74 281.2 302 57.0
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 9.2e-74 281.2 302 59.3
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 9.2e-74 281.2 310 56.8
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 1.6e-73 280.4 311 58.2
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 4.6e-73 278.9 251 62.5
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.3e-72 277.3 297 56.9
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 6.6e-72 275.0 298 57.7
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 8.6e-72 274.6 324 55.6
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 5.6e-71 271.9 312 56.1
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 9.6e-71 271.2 262 59.5
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 3.6e-70 269.2 305 56.4
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 8.1e-70 268.1 282 56.4
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 1.2e-68 264.2 304 55.6
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 2.0e-68 263.5 305 54.8
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 4.4e-68 262.3 297 55.2
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 5.8e-68 261.9 290 58.3
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 4.2e-66 255.8 256 64.8
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 9.3e-66 254.6 305 54.4
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 1.2e-65 254.2 305 56.4
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 1.0e-64 251.1 296 54.1
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 1.5e-63 247.3 274 58.8
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 2.1e-62 243.4 249 57.0
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 3.6e-62 242.7 296 53.4
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 2.4e-61 240.0 311 53.7
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 9.0e-61 238.0 296 52.0
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 2.2e-59 233.4 243 57.6
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 6.4e-59 231.9 256 62.5
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 2.4e-58 229.9 292 47.9
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 2.1e-57 226.9 309 47.2
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 1.8e-56 223.8 198 68.2
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 6.7e-56 221.9 306 48.0
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 1.1e-55 221.1 258 52.3
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 3.3e-55 219.5 304 52.3
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 2.8e-54 216.5 304 48.0
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 8.1e-54 214.9 311 52.7
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 1.1e-53 214.5 302 52.6
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 9.0e-53 211.5 299 44.8
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.2e-52 211.1 302 45.0
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 1.5e-52 210.7 258 55.4
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 7.6e-52 208.4 304 51.0
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 6.0e-49 198.7 188 70.7
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 1.7e-43 180.6 239 49.4
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 1.6e-41 174.1 170 67.6
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 6.0e-41 172.2 301 43.2
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 2.5e-39 166.8 292 39.0
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 3.3e-39 166.4 247 45.3
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 3.3e-39 166.4 255 45.1
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 5.7e-39 165.6 230 43.9
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 1.4e-37 161.0 255 43.5
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 1.8e-37 160.6 188 58.5
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 3.4e-36 156.4 250 46.4
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 1.7e-35 154.1 290 37.6
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 3.7e-30 136.3 226 44.7
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 2.4e-29 133.7 280 36.8
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 1.2e-28 131.3 102 70.6
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 1.3e-27 127.9 292 38.7
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 2.7e-25 120.2 82 68.3
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 1.4e-24 117.9 271 38.0
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 4.8e-22 109.4 201 40.3
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 5.2e-16 89.4 88 52.3
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 1.8e-13 80.9 57 70.2
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 2.4e-13 80.5 73 68.5
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 7.7e-12 75.5 115 45.2
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 1.0e-11 75.1 76 50.0
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 1.7e-11 74.3 96 44.8
MBI13_g34035_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 2.1e-09 67.4 95 48.4
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 5.2e-08 62.8 168 35.7
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 2.0e-07 60.8 121 32.2
A02p05200 Brassica napus HOM05D059425 ORTHO05D041380 4.8e-06 56.2 98 38.8


User provided reference genes

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