Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 0.0e+00 1385.9 1088 100.0
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 1.8e-276 956.4 1091 79.3
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 2.6e-275 952.6 1083 78.8
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 5.0e-274 948.3 1083 78.1
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 5.0e-266 921.8 1083 77.6
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 3.3e-209 733.0 950 73.6
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 1.0e-202 711.4 1087 68.1
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 2.1e-195 687.2 1088 65.0
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 1.8e-194 684.1 1079 65.8
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 2.3e-194 683.7 1079 65.8
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 2.1e-192 677.2 1085 68.1
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 1.4e-191 674.5 1044 68.7
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 8.4e-189 665.2 1088 64.5
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 4.3e-185 652.9 1082 66.5
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 9.0e-183 645.2 1020 68.2
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 2.0e-182 644.0 1071 63.1
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 2.0e-182 644.0 1020 68.4
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 8.7e-178 628.6 975 70.1
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 1.1e-177 628.2 1087 64.2
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 1.9e-172 610.9 1074 62.4
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 7.2e-172 609.0 981 66.4
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 1.7e-165 587.8 1064 61.9
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 1.6e-163 581.3 1067 62.0
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 1.6e-163 581.3 1071 61.4
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 6.1e-163 579.3 1086 61.3
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 4.4e-161 573.2 980 66.0
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 1.3e-160 571.6 1076 56.9
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 1.0e-157 562.0 1086 56.1
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 2.9e-157 560.5 1060 59.5
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 1.1e-156 558.5 1084 55.8
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 4.2e-156 556.6 1064 60.2
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 1.2e-155 555.1 993 67.0
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 2.6e-153 547.4 1063 51.6
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 6.3e-152 542.7 1074 60.1
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 2.6e-150 537.3 1066 59.2
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 1.7e-149 534.6 1060 61.3
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 8.5e-149 532.3 1087 58.1
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 5.7e-145 519.6 1064 59.8
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 6.3e-144 516.2 915 66.9
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 1.8e-143 514.6 1089 60.1
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 1.0e-141 508.8 1058 60.5
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 1.9e-140 504.6 1065 51.5
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 1.4e-138 498.4 1066 59.0
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 3.4e-137 493.8 1064 59.0
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 2.2e-136 491.1 1065 59.7
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 7.0e-135 486.1 1057 60.5
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 3.3e-132 477.2 1062 59.4
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 2.8e-128 464.2 758 53.4
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 5.9e-126 456.4 762 56.2
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 1.5e-121 441.8 1060 57.6
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 2.0e-121 441.4 1060 58.4
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 2.2e-120 438.0 1078 57.1
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 1.2e-118 432.2 1060 57.6
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 2.0e-118 431.4 648 62.2
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 9.5e-116 422.5 830 60.6
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 8.0e-115 419.5 732 55.3
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 1.8e-114 418.3 1061 57.7
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 2.3e-114 417.9 743 53.8
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.5e-113 415.2 1071 55.0
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 2.0e-113 414.8 1064 57.0
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 3.0e-109 401.0 1065 56.9
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 4.3e-108 397.1 1114 57.0
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.4e-106 392.1 1058 55.7
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 3.1e-106 391.0 1081 55.7
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 6.4e-104 383.3 1074 56.5
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 2.1e-102 378.3 908 56.6
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 8.6e-101 372.9 680 58.7
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 2.1e-99 368.2 1052 56.4
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 4.4e-97 360.5 1013 45.5
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 5.8e-97 360.1 1054 55.7
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 5.8e-97 360.1 681 60.9
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 4.9e-96 357.1 978 56.7
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 5.1e-93 347.1 740 48.8
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 5.1e-93 347.1 740 48.8
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 1.2e-91 342.4 744 47.7
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 3.8e-88 330.9 917 57.6
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 8.7e-85 319.7 1075 54.0
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 1.1e-84 319.3 1056 50.9
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 5.6e-84 317.0 743 48.6
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 2.6e-81 308.1 1078 53.8
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 6.4e-80 303.5 976 54.0
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 7.1e-79 300.1 757 48.5
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 1.5e-73 282.3 360 46.7
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 2.5e-68 265.0 671 52.3
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 2.1e-67 261.9 917 56.4
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 6.3e-59 233.8 924 57.0
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 5.0e-56 224.2 252 50.0
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 5.9e-49 200.7 343 35.0
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 3.8e-48 198.0 190 54.7
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 6.3e-43 180.6 172 51.7
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 1.4e-39 169.5 484 62.4
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 2.1e-38 165.6 735 40.8
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 1.3e-35 156.4 577 45.6
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 1.4e-26 126.3 458 59.8
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 5.3e-26 124.4 453 59.2
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 1.2e-25 123.2 244 34.0
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 1.7e-24 119.4 156 41.7
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 3.2e-23 115.2 663 40.9
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 5.5e-23 114.4 451 59.2
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 1.6e-22 112.8 149 40.3
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 5.7e-20 104.4 208 31.7
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 2.0e-17 95.9 323 73.1
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 2.0e-17 95.9 151 41.1
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.0e-16 93.6 323 73.1
Medtr3g103990 Medicago truncatula HOM05D006842 ORTHO05D008908 3.0e-13 82.0 95 44.2
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.2e-12 80.1 208 27.4
AUR62039733 Chenopodium quinoa HOM05D006842 ORTHO05D008908 5.9e-09 67.8 95 37.9
MD16G1250500 Malus domestica HOM05D006842 ORTHO05D008908 2.9e-08 65.5 54 51.9
Cc06_g01640 Coffea canephora HOM05D007172 ORTHO05D009267 1.5e-07 63.2 107 33.6
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 4.3e-07 61.6 179 24.0
CARHR072750 Cardamine hirsuta HOM05D006918 ORTHO05D008525 9.5e-07 60.5 194 25.8
Duzib093G2026 Durio zibethinus HOM05D000001 ORTHO05D010175 9.5e-07 60.5 189 24.9
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 9.5e-07 60.5 207 26.1
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 1.6e-06 59.7 86 33.7
THA.LOC104798403 Tarenaya hassleriana HOM05D002986 ORTHO05D007611 2.1e-06 59.3 79 43.0
AagrBONN_evm.TU.Sc2ySwM_368.2687 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.8e-06 58.9 143 30.8
Nitab4.5_0002941g0070 Nicotiana tabacum HOM05D008483 ORTHO05D010726 2.8e-06 58.9 80 33.8
TPR.G25962 Trifolium pratense HOM05D002986 ORTHO05D007611 2.8e-06 58.9 92 38.0
Zm00001eb434620 Zea mays HOM05D006980 ORTHO05D008704 2.8e-06 58.9 98 28.6
AagrBONN_evm.TU.Sc2ySwM_362.2733 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.6e-06 58.5 152 27.6
Lsat_1_v5_gn_9_13021 Lactuca sativa HOM05D000001 ORTHO05D000003 4.7e-06 58.2 152 30.3
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 4.7e-06 58.2 209 25.8
Cc02_g34430 Coffea canephora HOM05D006842 ORTHO05D020317 6.1e-06 57.8 63 44.4
Potri.011G057900 Populus trichocarpa HOM05D002986 ORTHO05D007611 6.1e-06 57.8 81 39.5
Actinidia05301 Actinidia chinensis HOM05D006895 ORTHO05D008605 8.0e-06 57.4 112 29.5
TPR.G30959 Trifolium pratense HOM05D006895 ORTHO05D008605 8.0e-06 57.4 198 22.2


User provided reference genes

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