Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G182600 Theobroma cacao HOM05D000002 ORTHO05D409269 1.1e-41 172.9 88 100.0
CSS0019076 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-11 73.2 97 50.5
CSS0048213 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.3e-11 71.6 97 46.4
CSS0045881 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.7e-11 70.1 97 46.4
SHI15917 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-10 67.8 78 50.0
RcHm_v2.0_Chr6g0259691 Rosa chinensis HOM05D000002 ORTHO05D000001 6.3e-10 67.4 89 46.1
MD02G1295200 Malus domestica HOM05D000002 ORTHO05D000001 1.4e-09 66.2 90 45.6
SHI29360 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-09 66.2 93 44.1
SHI03433 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-09 65.9 93 44.1
SHI18479 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-09 65.9 89 44.9
SHI03309 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-09 64.3 93 41.9
SHI28872 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-09 64.3 93 44.1
SHI44369 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-09 64.3 93 44.1
SHI49905 Sapria himalayana HOM05D000002 ORTHO05D000001 5.3e-09 64.3 90 43.3
RcHm_v2.0_Chr5g0064021 Rosa chinensis HOM05D000002 ORTHO05D000001 6.9e-09 63.9 91 40.7
SHI28425 Sapria himalayana HOM05D000002 ORTHO05D000001 6.9e-09 63.9 88 43.2
SHI51724 Sapria himalayana HOM05D000002 ORTHO05D000001 9.1e-09 63.5 90 43.3
SHI33540 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-08 62.0 96 39.6
SHI44613 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-08 62.0 93 43.0
FvH4_6g07331 Fragaria vesca HOM05D000002 ORTHO05D000001 3.4e-08 61.6 89 42.7
SHI05652 Sapria himalayana HOM05D000002 ORTHO05D000001 3.4e-08 61.6 96 39.6
FvH4_5g12471 Fragaria vesca HOM05D000002 ORTHO05D000001 4.5e-08 61.2 89 42.7
SHI12496 Sapria himalayana HOM05D000002 ORTHO05D000001 4.5e-08 61.2 93 45.2
Sopen01g009150 Solanum pennellii HOM05D000002 ORTHO05D000001 4.5e-08 61.2 77 44.2
SHI13898 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-07 59.7 75 45.3
SHI32142 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-07 59.7 73 47.9
CSS0015841 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.2e-07 58.9 100 38.0
CSS0050078 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.2e-07 58.9 100 38.0
CSS0040701 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-07 58.5 85 45.9
Sopen03g025100 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-07 58.5 93 38.7
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 3.8e-07 58.2 89 42.7
SHI10453 Sapria himalayana HOM05D000002 ORTHO05D000001 3.8e-07 58.2 93 45.2
Sopen06g009440 Solanum pennellii HOM05D000002 ORTHO05D000001 3.8e-07 58.2 71 45.1
TPR.G40049 Trifolium pratense HOM05D000002 ORTHO05D000001 3.8e-07 58.2 93 39.8
SHI25370 Sapria himalayana HOM05D000002 ORTHO05D000001 5.0e-07 57.8 85 43.5
CSS0011358 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.5e-07 57.4 82 47.6
CSS0046072 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.5e-07 57.4 100 37.0
SHI19081 Sapria himalayana HOM05D000002 ORTHO05D000001 6.5e-07 57.4 85 45.9
SHI25869 Sapria himalayana HOM05D000002 ORTHO05D000001 6.5e-07 57.4 89 42.7
SHI27864 Sapria himalayana HOM05D000002 ORTHO05D000001 8.5e-07 57.0 84 44.0
TPR.G5909 Trifolium pratense HOM05D000002 ORTHO05D000001 8.5e-07 57.0 99 37.4
RcHm_v2.0_Chr7g0237911 Rosa chinensis HOM05D000002 ORTHO05D000001 1.4e-06 56.2 93 35.5
CSS0031781 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-06 55.8 90 38.9
SHI17312 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-06 55.8 70 48.6
CSS0024331 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.5e-06 55.5 93 40.9
TPR.G23755 Trifolium pratense HOM05D000002 ORTHO05D000001 2.5e-06 55.5 99 37.4
SHI05324 Sapria himalayana HOM05D000002 ORTHO05D000001 3.2e-06 55.1 89 42.7
SHI10661 Sapria himalayana HOM05D000002 ORTHO05D000001 3.2e-06 55.1 73 46.6
SHI49722 Sapria himalayana HOM05D000002 ORTHO05D000001 3.2e-06 55.1 89 41.6
SHI49766 Sapria himalayana HOM05D000002 ORTHO05D000001 3.2e-06 55.1 89 41.6
FvH4_7g03911 Fragaria vesca HOM05D000002 ORTHO05D000001 4.2e-06 54.7 91 41.8
SHI25931 Sapria himalayana HOM05D000002 ORTHO05D000001 4.2e-06 54.7 89 39.3
RcHm_v2.0_Chr1g0330721 Rosa chinensis HOM05D000002 ORTHO05D000001 5.5e-06 54.3 93 34.4
SHI04397 Sapria himalayana HOM05D000002 ORTHO05D000001 5.5e-06 54.3 77 45.5
Sopen01g013480 Solanum pennellii HOM05D000002 ORTHO05D000001 5.5e-06 54.3 96 34.4
SHI12930 Sapria himalayana HOM05D000002 ORTHO05D000001 7.2e-06 53.9 89 39.3
SHI35571 Sapria himalayana HOM05D000002 ORTHO05D000001 7.2e-06 53.9 72 44.4
SHI45230 Sapria himalayana HOM05D000002 ORTHO05D000001 7.2e-06 53.9 87 39.1
Sopen03g018320 Solanum pennellii HOM05D000002 ORTHO05D000001 7.2e-06 53.9 71 42.3
CSS0025698 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 9.4e-06 53.5 85 44.7
RcHm_v2.0_Chr1g0321811 Rosa chinensis HOM05D000002 ORTHO05D000001 9.4e-06 53.5 85 41.2
SHI01007 Sapria himalayana HOM05D000002 ORTHO05D000001 9.4e-06 53.5 94 38.3
SHI10434 Sapria himalayana HOM05D000002 ORTHO05D000001 9.4e-06 53.5 89 39.3
SHI15866 Sapria himalayana HOM05D000002 ORTHO05D000001 9.4e-06 53.5 84 41.7
Sopen01g017420 Solanum pennellii HOM05D000002 ORTHO05D000001 9.4e-06 53.5 93 35.5
Sopen05g010950 Solanum pennellii HOM05D000002 ORTHO05D000001 9.4e-06 53.5 93 35.5
Sopen05g018370 Solanum pennellii HOM05D000002 ORTHO05D000001 9.4e-06 53.5 93 35.5
Sopen06g017010 Solanum pennellii HOM05D000002 ORTHO05D000001 9.4e-06 53.5 93 35.5
Sopen10g021260 Solanum pennellii HOM05D000002 ORTHO05D000001 9.4e-06 53.5 93 35.5
TPR.G7066 Trifolium pratense HOM05D000002 ORTHO05D000001 9.4e-06 53.5 91 40.7


User provided reference genes

Program Settings