Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G179900 Theobroma cacao HOM05D007386 ORTHO05D009210 2.7e-73 278.9 171 100.0
Duzib168G0678 Durio zibethinus HOM05D007386 ORTHO05D009210 1.3e-64 250.0 171 81.3
COL.COLO4_25451 Corchorus olitorius HOM05D007386 ORTHO05D009210 2.6e-60 235.7 171 83.6
Gohir.D08G093000 Gossypium hirsutum HOM05D007386 ORTHO05D009210 5.8e-60 234.6 172 80.2
Gorai.004G098600 Gossypium raimondii HOM05D007386 ORTHO05D009210 4.9e-59 231.5 172 79.7
Gohir.A08G081100 Gossypium hirsutum HOM05D007386 ORTHO05D009210 1.8e-53 213.0 171 77.2
Cpa.g.sc95.34 Carica papaya HOM05D007386 ORTHO05D009210 1.2e-46 190.3 171 61.4
Eucgr.K03341 Eucalyptus grandis HOM05D007386 ORTHO05D009210 8.9e-45 184.1 175 64.6
TAR636G2514 Trochodendron aralioides HOM05D007386 ORTHO05D009210 3.4e-44 182.2 183 56.8
GSVIVG01001191001 Vitis vinifera HOM05D007386 ORTHO05D009210 5.8e-44 181.4 127 74.8
TWI18G1441 Tripterygium wilfordii HOM05D007386 ORTHO05D009210 7.6e-44 181.0 173 61.8
PGR044G1958 Punica granatum HOM05D007386 ORTHO05D009210 9.9e-44 180.6 176 58.0
Manes.05G078600 Manihot esculenta HOM05D007386 ORTHO05D009210 1.3e-43 180.3 178 57.3
Cfa006177 Carpinus fangiana HOM05D007386 ORTHO05D009210 2.9e-43 179.1 184 60.3
Nn6g34127 Nelumbo nucifera HOM05D007386 ORTHO05D009210 2.9e-43 179.1 179 58.7
CiPaw.07G088700 Carya illinoinensis HOM05D007386 ORTHO05D009210 8.4e-43 177.6 183 61.7
arahy.Tifrunner.gnm1.ann1.ZF8TUR Arachis hypogaea HOM05D007386 ORTHO05D009210 2.4e-42 176.0 174 64.4
Haze_04670 Corylus avellana HOM05D007386 ORTHO05D009210 5.4e-42 174.9 130 72.3
Sc05g0001200 Simmondsia chinensis HOM05D007386 ORTHO05D009210 5.4e-42 174.9 174 56.3
arahy.Tifrunner.gnm1.ann1.JNW8E7 Arachis hypogaea HOM05D007386 ORTHO05D009210 2.1e-41 172.9 174 63.8
Lalb_Chr06g0162851 Lupinus albus HOM05D007386 ORTHO05D009210 3.5e-41 172.2 174 56.3
Oeu059791.1 Olea europaea HOM05D007386 ORTHO05D009210 3.5e-41 172.2 180 55.0
Potri.005G213000 Populus trichocarpa HOM05D007386 ORTHO05D009210 4.6e-41 171.8 174 65.5
Ca_09739_v3 Cicer arietinum L. HOM05D007386 ORTHO05D009210 1.3e-40 170.2 174 67.2
Medtr1g071630 Medicago truncatula HOM05D007386 ORTHO05D009210 1.3e-40 170.2 174 58.0
Sabra05G0162700 Salix brachista HOM05D007386 ORTHO05D009210 1.3e-40 170.2 174 62.1
VMungo0720G1463 Vigna mungo HOM05D007386 ORTHO05D009210 2.3e-40 169.5 175 55.4
CSS0002766 Camellia sinensis var. sinensis HOM05D007386 ORTHO05D009210 6.6e-40 167.9 172 54.7
vmacro02599 Vaccinium macrocarpon HOM05D007386 ORTHO05D009210 6.6e-40 167.9 136 63.2
HanXRQChr10g0282251 Helianthus annuus HOM05D007386 ORTHO05D009210 8.7e-40 167.5 174 55.7
QL12p020752 Quercus lobata HOM05D007386 ORTHO05D009210 1.1e-39 167.2 176 54.0
CSS0036584 Camellia sinensis var. sinensis HOM05D007386 ORTHO05D009210 1.5e-39 166.8 180 56.1
ECA247G1531 Erigeron canadensis HOM05D007386 ORTHO05D009210 1.5e-39 166.8 178 57.9
Glyma.02G145500 Glycine max HOM05D007386 ORTHO05D009210 1.5e-39 166.8 174 56.9
Actinidia00789 Actinidia chinensis HOM05D007386 ORTHO05D009210 1.9e-39 166.4 183 50.3
Rhsim13G0027600 Rhododendron simsii HOM05D007386 ORTHO05D009210 4.3e-39 165.2 140 61.4
Phvul.007G173800 Phaseolus vulgaris HOM05D007386 ORTHO05D009210 5.6e-39 164.9 175 54.3
MSTRG.21545 Avicennia marina HOM05D007386 ORTHO05D009210 7.3e-39 164.5 125 70.4
SalBow4G1029 Salvia bowleyana HOM05D007386 ORTHO05D009210 1.6e-38 163.3 176 52.8
TPR.G25681 Trifolium pratense HOM05D007386 ORTHO05D009210 1.6e-38 163.3 178 57.9
EL10Ac3g07280 Beta vulgaris HOM05D007386 ORTHO05D009210 2.8e-38 162.5 138 62.3
AUR62030273 Chenopodium quinoa HOM05D007386 ORTHO05D009210 3.6e-38 162.2 138 61.6
Prupe.8G236700 Prunus persica HOM05D007386 ORTHO05D009210 6.2e-38 161.4 186 57.5
Ah.04g150680 Amaranthus hybridus HOM05D007386 ORTHO05D009210 8.1e-38 161.0 171 65.5
AUR62018389 Chenopodium quinoa HOM05D000027 ORTHO05D000066 8.1e-38 161.0 138 62.3
Glyma.10G028600 Glycine max HOM05D007386 ORTHO05D009210 1.4e-37 160.2 174 60.3
Psat6g059880 Pisum sativum HOM05D007386 ORTHO05D009210 3.1e-37 159.1 122 69.7
DCAR_018437 Daucus carota HOM05D007386 ORTHO05D009210 5.3e-37 158.3 175 55.4
CDE06G2441 Ceratophyllum demersum HOM05D007386 ORTHO05D009210 9.0e-37 157.5 139 61.9
CANSAT78G1636 Cannabis sativa HOM05D007386 ORTHO05D009210 2.6e-36 156.0 183 50.8
MBI11_g22999_MAGBIO Magnolia biondii HOM05D007386 ORTHO05D009210 7.6e-36 154.5 127 63.8
THA.LOC104813154 Tarenaya hassleriana HOM05D007386 ORTHO05D009210 6.4e-35 151.4 130 59.2
ClCG09G007290 Citrullus lanatus HOM05D007386 ORTHO05D009210 2.1e-33 146.4 180 50.0
Dinv34778 Davidia involucrata HOM05D002659 ORTHO05D002940 3.5e-33 145.6 110 70.9
Cc01_g19160 Coffea canephora HOM05D007386 ORTHO05D009210 4.6e-33 145.2 133 61.7
Migut.D00331 Erythranthe guttata HOM05D007386 ORTHO05D009210 6.0e-33 144.8 120 68.3
MELO3C015793.2 Cucumis melo HOM05D007386 ORTHO05D009210 2.3e-32 142.9 188 50.5
ATR0665G488 Amborella trichopoda HOM05D007386 ORTHO05D009210 1.1e-31 140.6 121 64.5
Lsat_1_v5_gn_9_6101 Lactuca sativa HOM05D007386 ORTHO05D009210 1.1e-31 140.6 177 61.0
BcaB01g01820 Brassica carinata HOM05D007386 ORTHO05D009210 1.5e-31 140.2 126 55.6
Aa31LG9G9760 Aethionema arabicum HOM05D000698 ORTHO05D009210 2.5e-31 139.4 172 59.3
BcaC04g21312 Brassica carinata HOM05D007386 ORTHO05D009210 2.5e-31 139.4 134 53.7
C09p33290 Brassica napus HOM05D007386 ORTHO05D009210 2.5e-31 139.4 134 53.7
BolC9t56165H Brassica oleracea HOM05D007386 ORTHO05D009210 2.5e-31 139.4 134 53.7
A09p26200 Brassica napus HOM05D007386 ORTHO05D009210 3.3e-31 139.0 126 55.6
BraA09t38188Z Brassica rapa HOM05D007386 ORTHO05D009210 3.3e-31 139.0 126 55.6
CARHR252930 Cardamine hirsuta HOM05D007386 ORTHO05D009210 3.3e-31 139.0 126 54.8
Sp6g04310 Schrenkiella parvula HOM05D007386 ORTHO05D009210 1.6e-30 136.7 134 52.2
HPP92_020354 Vanilla planifolia HOM05D007386 ORTHO05D009210 1.6e-30 136.7 141 57.4
Thhalv10029017m.g Eutrema salsugineum HOM05D007386 ORTHO05D009210 2.8e-30 136.0 134 55.2
AT4G04614 Arabidopsis thaliana HOM05D007386 ORTHO05D009210 1.8e-29 133.3 136 55.9
Hund09518 Selenicereus undatus HOM05D007386 ORTHO05D009210 3.1e-29 132.5 134 55.2
AL6G48080 Arabidopsis lyrata HOM05D007386 ORTHO05D009210 4.0e-29 132.1 126 53.2
Aqoxy5G00426 Aquilegia oxysepala HOM05D007386 ORTHO05D009210 6.9e-29 131.3 132 55.3
CsaV3_7G027780 Cucumis sativus L. HOM05D007386 ORTHO05D009210 6.9e-29 131.3 193 50.3
Lj5g0008996 Lotus japonicus HOM05D007386 ORTHO05D009210 6.9e-29 131.3 175 56.0
Ciclev10022575m.g Citrus clementina HOM05D007386 ORTHO05D009210 9.0e-29 131.0 136 55.9
Carub.0006s3245 Capsella rubella HOM05D007386 ORTHO05D009210 4.5e-28 128.6 126 52.4
MD03G1260500 Malus domestica HOM05D007386 ORTHO05D009210 5.8e-28 128.3 182 45.1
Nitab4.5_0000252g0090 Nicotiana tabacum HOM05D007386 ORTHO05D009210 1.3e-27 127.1 181 45.9
Nitab4.5_0009452g0010 Nicotiana tabacum HOM05D007386 ORTHO05D009210 1.1e-26 124.0 184 45.7
MD11G1280800 Malus domestica HOM05D007386 ORTHO05D009210 5.4e-26 121.7 182 44.0
Peaxi162Scf00230g01010 Petunia axillaris HOM05D007386 ORTHO05D009210 7.1e-26 121.3 174 51.1
SGA_v2.0_scaffold1G00514 Striga asiatica HOM05D007386 ORTHO05D009210 2.7e-25 119.4 132 55.3
unitig_0.g1138 Utricularia gibba HOM05D007386 ORTHO05D009210 3.5e-25 119.0 123 56.1
Atru.chr5.1489 Acer truncatum HOM05D007386 ORTHO05D009210 2.3e-24 116.3 173 50.9
Sed0008482 Sechium edule HOM05D007386 ORTHO05D009210 2.3e-24 116.3 181 47.5
FAN15G1284 Fragaria x ananassa HOM05D007386 ORTHO05D009210 2.1e-22 109.8 183 42.6
SMO351G0424 Selaginella moellendorffii HOM05D007386 ORTHO05D009210 2.4e-21 106.3 126 50.0
PSO832G2845 Papaver somniferum HOM05D007386 ORTHO05D009210 2.6e-20 102.8 146 46.6
PSO210G0643 Papaver somniferum HOM05D007386 ORTHO05D009210 5.8e-20 101.7 150 46.0
Pp3c25_4880 Physcomitrium patens HOM05D007386 ORTHO05D009210 2.2e-19 99.8 146 44.5
FAN24G1308 Fragaria x ananassa HOM05D007386 ORTHO05D009210 4.9e-19 98.6 184 39.7
FvH4_2g23140 Fragaria vesca HOM05D007386 ORTHO05D009210 4.2e-18 95.5 188 37.8
RcHm_v2.0_Chr6g0290391 Rosa chinensis HOM05D007386 ORTHO05D009210 3.9e-16 89.0 186 37.1
FAN20G3170 Fragaria x ananassa HOM05D007386 ORTHO05D009210 1.1e-15 87.4 185 37.8
SGA_v2.0_scaffold244G44361 Striga asiatica HOM05D007386 ORTHO05D009210 7.4e-15 84.7 74 66.2
Os06g0630300 Oryza sativa ssp. japonica HOM05D007386 ORTHO05D009210 3.7e-14 82.4 143 39.9
Solyc09g065510.3 Solanum lycopersicum HOM05D007386 ORTHO05D009210 1.4e-13 80.5 176 42.6
Sopen09g027270 Solanum pennellii HOM05D007386 ORTHO05D009210 1.4e-13 80.5 176 39.8
arahy.Tifrunner.gnm1.ann1.90IGTQ Arachis hypogaea HOM05D007386 ORTHO05D009210 3.1e-13 79.3 104 51.0
Mapoly0035s0101 Marchantia polymorpha HOM05D007386 ORTHO05D009210 1.2e-12 77.4 153 39.2
FAN27G1502 Fragaria x ananassa HOM05D007386 ORTHO05D009210 2.6e-12 76.3 131 43.5
CAN.G1105.2 Capsicum annuum HOM05D007386 ORTHO05D009210 5.0e-11 72.0 173 41.6
PGSC0003DMG400019353 Solanum tuberosum HOM05D007386 ORTHO05D009210 1.9e-10 70.1 175 40.6
Cre17.g717700 Chlamydomonas reinhardtii HOM05D007386 ORTHO05D009210 7.9e-09 64.7 127 37.8
SEGI_27286 Sequoiadendron giganteum HOM05D007386 ORTHO05D009210 2.3e-08 63.2 95 40.0
arahy.Tifrunner.gnm1.ann1.92TB4L Arachis hypogaea HOM05D007386 ORTHO05D009210 2.8e-06 56.2 80 48.8


User provided reference genes

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