Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G178300 Theobroma cacao HOM05D007665 ORTHO05D008293 2.1e-149 532.3 269 100.0
Duzib150G0483 Durio zibethinus HOM05D007665 ORTHO05D008293 1.2e-109 400.2 299 73.2
Gohir.D08G093300 Gossypium hirsutum HOM05D007665 ORTHO05D008293 7.1e-97 357.8 293 70.0
Gorai.004G098900 Gossypium raimondii HOM05D007665 ORTHO05D008293 1.4e-92 343.6 287 68.3
Gohir.A08G083600 Gossypium hirsutum HOM05D007665 ORTHO05D008293 7.6e-91 337.8 287 67.6
COL.COLO4_35626 Corchorus olitorius HOM05D007665 ORTHO05D008293 2.9e-82 309.3 307 61.6
QL11p005089 Quercus lobata HOM05D007665 ORTHO05D008293 7.6e-75 284.6 299 58.9
Potri.018G090000 Populus trichocarpa HOM05D007665 ORTHO05D008293 3.8e-74 282.3 303 56.8
CiPaw.08G034700 Carya illinoinensis HOM05D007665 ORTHO05D008293 1.1e-68 264.2 299 53.8
CiPaw.07G194500 Carya illinoinensis HOM05D007665 ORTHO05D008293 2.6e-67 259.6 300 54.3
Cfa013407 Carpinus fangiana HOM05D007665 ORTHO05D008293 2.0e-62 243.4 289 55.7
Prupe.1G081700 Prunus persica HOM05D007665 ORTHO05D008293 2.0e-62 243.4 301 50.8
MD16G1253900 Malus domestica HOM05D007665 ORTHO05D008293 2.6e-62 243.0 301 49.5
Sabra18G0077500 Salix brachista HOM05D007665 ORTHO05D008293 3.3e-62 242.7 314 51.3
TWI34G1272 Tripterygium wilfordii HOM05D007665 ORTHO05D008293 1.3e-61 240.7 304 53.3
FAN17G2593 Fragaria x ananassa HOM05D007665 ORTHO05D008293 6.3e-61 238.4 309 51.1
FAN07G1410 Fragaria x ananassa HOM05D007665 ORTHO05D008293 3.1e-60 236.1 309 51.1
Potri.006G165500 Populus trichocarpa HOM05D007665 ORTHO05D008293 3.1e-60 236.1 296 53.4
Sabra06G0127300 Salix brachista HOM05D007665 ORTHO05D008293 6.9e-60 235.0 306 52.0
FvH4_4g07760 Fragaria vesca HOM05D007665 ORTHO05D008293 9.1e-60 234.6 309 50.8
FAN12G1950 Fragaria x ananassa HOM05D007665 ORTHO05D008293 9.1e-60 234.6 309 50.8
FAN22G0501 Fragaria x ananassa HOM05D007665 ORTHO05D008293 2.9e-58 229.6 310 50.6
RcHm_v2.0_Chr4g0400841 Rosa chinensis HOM05D007665 ORTHO05D008293 2.9e-58 229.6 311 52.4
Manes.14G158020 Manihot esculenta HOM05D007665 ORTHO05D008293 2.1e-56 223.4 294 52.0
Manes.06G022200 Manihot esculenta HOM05D007665 ORTHO05D008293 3.6e-56 222.6 298 51.0
CANSAT11G1651 Cannabis sativa HOM05D007665 ORTHO05D008293 7.4e-54 214.9 298 48.0
Sed0009659 Sechium edule HOM05D007665 ORTHO05D008293 4.8e-53 212.2 304 45.7
Phvul.009G238500 Phaseolus vulgaris HOM05D007665 ORTHO05D008293 2.4e-52 209.9 308 47.4
Glyma.15G163200 Glycine max HOM05D007665 ORTHO05D008293 4.1e-52 209.1 305 46.2
MD13G1247000 Malus domestica HOM05D007665 ORTHO05D008293 4.1e-52 209.1 246 52.0
TWI32G1073 Tripterygium wilfordii HOM05D007665 ORTHO05D008293 2.0e-51 206.8 303 47.9
VMungo1309G2535 Vigna mungo HOM05D007665 ORTHO05D008293 3.5e-51 206.1 312 44.6
Dinv19563 Davidia involucrata HOM05D007665 ORTHO05D008293 2.9e-50 203.0 302 46.0
ClCG06G013480 Citrullus lanatus HOM05D007665 ORTHO05D008293 5.0e-50 202.2 315 46.7
Glyma.09G056900 Glycine max HOM05D007665 ORTHO05D008293 1.1e-49 201.1 307 45.3
Cpa.g.c26900 Carica papaya HOM05D007665 ORTHO05D008293 3.2e-49 199.5 324 46.3
MELO3C017449.2 Cucumis melo HOM05D007665 ORTHO05D008293 3.2e-49 199.5 327 45.6
CsaV3_1G031740 Cucumis sativus L. HOM05D007665 ORTHO05D008293 7.2e-49 198.4 327 45.6
TAR625G0485 Trochodendron aralioides HOM05D007665 ORTHO05D008293 8.0e-48 194.9 320 41.9
Ciclev10009102m.g Citrus clementina HOM05D007665 ORTHO05D008293 2.3e-47 193.4 313 47.9
Lj6g0002099 Lotus japonicus HOM05D007665 ORTHO05D008293 4.8e-45 185.7 300 45.0
Phvul.003G143500 Phaseolus vulgaris HOM05D007665 ORTHO05D008293 8.2e-45 184.9 296 43.9
Atru.chr7.835 Acer truncatum HOM05D007665 ORTHO05D008293 5.3e-44 182.2 296 48.0
Glyma.13G098200 Glycine max HOM05D007665 ORTHO05D008293 4.5e-43 179.1 277 43.3
Sed0009111 Sechium edule HOM05D007665 ORTHO05D008293 3.8e-42 176.0 285 44.9
Haze_21953 Corylus avellana HOM05D007665 ORTHO05D008293 5.0e-42 175.6 211 53.6
Glyma.17G061500 Glycine max HOM05D007665 ORTHO05D008293 1.5e-41 174.1 279 43.4
Lalb_Chr18g0052461 Lupinus albus HOM05D007665 ORTHO05D008293 3.6e-40 169.5 300 41.0
VMungo1215G3214 Vigna mungo HOM05D007665 ORTHO05D008293 3.6e-40 169.5 298 42.3
Gorai.009G003800 Gossypium raimondii HOM05D007665 ORTHO05D008293 1.0e-39 167.9 287 43.2
Eucgr.C00139 Eucalyptus grandis HOM05D007665 ORTHO05D008293 2.0e-38 163.7 292 40.4
Lj4g0023476 Lotus japonicus HOM05D007665 ORTHO05D008293 1.7e-37 160.6 241 46.9
Gohir.A05G003700 Gossypium hirsutum HOM05D007665 ORTHO05D008293 1.4e-36 157.5 294 41.2
Medtr2g036740 Medicago truncatula HOM05D007665 ORTHO05D008293 1.4e-36 157.5 296 39.9
GSVIVG01029234001 Vitis vinifera HOM05D007665 ORTHO05D008293 4.1e-36 156.0 242 45.5
MBI16_g38083_MAGBIO Magnolia biondii HOM05D007665 ORTHO05D008293 7.0e-36 155.2 337 37.7
Psat1g146200 Pisum sativum HOM05D007665 ORTHO05D008293 1.0e-34 151.4 288 39.2
TPR.G9242 Trifolium pratense HOM05D007665 ORTHO05D008293 1.1e-33 147.9 301 39.2
Hma1.2p1_1303F.1_g274400 Hydrangea macrophylla HOM05D007665 ORTHO05D008293 4.2e-33 146.0 309 39.5
arahy.Tifrunner.gnm1.ann1.HIJU8F Arachis hypogaea HOM05D007665 ORTHO05D008293 5.2e-31 139.0 303 37.6
arahy.Tifrunner.gnm1.ann1.6P3KM7 Arachis hypogaea HOM05D007665 ORTHO05D008293 8.8e-31 138.3 292 38.4
Actinidia01304 Actinidia chinensis HOM05D007665 ORTHO05D008293 1.2e-30 137.9 326 40.2
arahy.Tifrunner.gnm1.ann1.38WMVK Arachis hypogaea HOM05D007665 ORTHO05D008293 2.0e-30 137.1 303 37.0
arahy.Tifrunner.gnm1.ann1.D7NBKG Arachis hypogaea HOM05D007665 ORTHO05D008293 2.0e-30 137.1 292 38.4
Cc06_g13100 Coffea canephora HOM05D007665 ORTHO05D008293 4.9e-29 132.5 295 38.3
Rhsim01G0002100 Rhododendron simsii HOM05D007665 ORTHO05D008293 4.9e-29 132.5 318 36.8
Lalb_Chr15g0084041 Lupinus albus HOM05D007665 ORTHO05D008293 5.4e-28 129.0 226 42.9
Aqoxy7G02985 Aquilegia oxysepala HOM05D007665 ORTHO05D008293 2.7e-27 126.7 287 39.4
Gohir.A08G019000 Gossypium hirsutum HOM05D007665 ORTHO05D008293 5.9e-27 125.6 278 36.0
Gorai.004G027000 Gossypium raimondii HOM05D007665 ORTHO05D008293 1.7e-26 124.0 278 35.6
Lalb_Chr12g0199491 Lupinus albus HOM05D007665 ORTHO05D008293 5.0e-26 122.5 258 36.8
Gohir.D05G004100 Gossypium hirsutum HOM05D007665 ORTHO05D008293 1.9e-25 120.6 226 42.0
BcaC04g19976 Brassica carinata HOM05D010683 ORTHO05D008293 4.0e-23 112.8 217 38.2
A10p14800 Brassica napus HOM05D010683 ORTHO05D008293 4.0e-23 112.8 218 37.6
C09p49230 Brassica napus HOM05D010683 ORTHO05D008293 4.0e-23 112.8 217 38.2
BolC9t57773H Brassica oleracea HOM05D010683 ORTHO05D008293 4.0e-23 112.8 217 38.2
THA.LOC104811782 Tarenaya hassleriana HOM05D007665 ORTHO05D008293 8.9e-23 111.7 304 35.5
A02p08580 Brassica napus HOM05D010683 ORTHO05D008293 3.7e-21 106.3 218 38.1
BraA02t05927Z Brassica rapa HOM05D010683 ORTHO05D008293 3.7e-21 106.3 218 38.1
TPR.G5363 Trifolium pratense HOM05D007665 ORTHO05D008293 8.3e-21 105.1 233 39.1
PGR142G3274 Punica granatum HOM05D007665 ORTHO05D008293 5.4e-20 102.4 293 33.4
Ca_21241_v3 Cicer arietinum L. HOM05D007665 ORTHO05D008293 3.5e-19 99.8 222 37.8
Lsat_1_v5_gn_5_85601 Lactuca sativa HOM05D007665 ORTHO05D008293 4.6e-19 99.4 217 35.0
DCAR_009919 Daucus carota HOM05D007665 ORTHO05D008293 3.0e-18 96.7 235 37.4
MSTRG.6233 Avicennia marina HOM05D007665 ORTHO05D008293 3.9e-18 96.3 227 38.8
BcaB08g36093 Brassica carinata HOM05D010683 ORTHO05D008293 8.6e-18 95.1 272 34.6
Lalb_Chr13g0300111 Lupinus albus HOM05D007665 ORTHO05D008293 1.1e-17 94.7 195 37.4
Nn8g39181 Nelumbo nucifera HOM05D007665 ORTHO05D008293 2.5e-17 93.6 168 40.5
BcaC03g14162 Brassica carinata HOM05D010683 ORTHO05D008293 5.6e-17 92.4 217 35.5
Medtr4g127680 Medicago truncatula HOM05D007665 ORTHO05D008293 7.3e-17 92.0 143 45.5
Psat0s2178g0120 Pisum sativum HOM05D007665 ORTHO05D008293 1.2e-16 91.3 146 41.8
C02p14330 Brassica napus HOM05D010683 ORTHO05D008293 2.8e-16 90.1 217 35.0
BolC2t07559H Brassica oleracea HOM05D010683 ORTHO05D008293 2.8e-16 90.1 217 35.0
CARHR271130 Cardamine hirsuta HOM05D010683 ORTHO05D008293 6.2e-16 89.0 216 34.7
Sp6g19060 Schrenkiella parvula HOM05D010683 ORTHO05D008293 8.0e-16 88.6 216 35.2
BcaB05g22338 Brassica carinata HOM05D010683 ORTHO05D008293 2.3e-15 87.0 218 34.4
AT5G57340 Arabidopsis thaliana HOM05D010683 ORTHO05D008293 5.2e-15 85.9 278 30.9
Thhalv10014550m.g Eutrema salsugineum HOM05D010683 ORTHO05D008293 1.2e-14 84.7 216 33.8
PSO063G5967 Papaver somniferum HOM05D007665 ORTHO05D008293 2.0e-14 84.0 319 27.9
Carub.0008s1785 Capsella rubella HOM05D010683 ORTHO05D008293 3.4e-14 83.2 228 33.8
AL8G33310 Arabidopsis lyrata HOM05D010683 ORTHO05D008293 7.5e-14 82.0 218 32.6
Peaxi162Scf01054g00014 Petunia axillaris HOM05D023392 ORTHO05D008293 7.5e-14 82.0 226 33.2
Solyc07g017870.2 Solanum lycopersicum HOM05D023392 ORTHO05D008293 9.8e-14 81.6 246 32.5
Aa31LG3G13210 Aethionema arabicum HOM05D010683 ORTHO05D008293 2.9e-13 80.1 276 30.8
Gohir.D08G029600 Gossypium hirsutum HOM05D007665 ORTHO05D008293 7.8e-11 72.0 149 36.9
Oeu056507.1 Olea europaea HOM05D007665 ORTHO05D008293 7.8e-11 72.0 153 37.3
THA.LOC104813513 Tarenaya hassleriana HOM05D007665 ORTHO05D008293 1.7e-10 70.9 259 33.2
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 8.6e-10 68.6 239 28.0
HPP92_018370 Vanilla planifolia HOM05D007665 ORTHO05D008293 1.1e-09 68.2 266 30.5
PSO170G3678 Papaver somniferum HOM05D007665 ORTHO05D008293 1.5e-09 67.8 255 29.4
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 1.2e-08 64.7 237 30.0
ATR0580G179 Amborella trichopoda HOM05D007665 ORTHO05D008293 2.8e-08 63.5 269 26.8
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 2.8e-08 63.5 226 31.4
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 3.6e-08 63.2 146 34.9
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 3.6e-08 63.2 146 35.6
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 4.7e-08 62.8 223 26.5
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 4.7e-08 62.8 221 29.4
HanXRQChr10g0308711 Helianthus annuus HOM05D007665 ORTHO05D008293 1.4e-07 61.2 77 48.1
MSTRG.19714 Avicennia marina HOM05D007665 ORTHO05D008293 3.1e-07 60.1 147 36.1
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 3.1e-07 60.1 226 28.3
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 5.2e-07 59.3 238 29.0
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 5.2e-07 59.3 223 31.4
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 8.9e-07 58.5 226 25.7
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 8.9e-07 58.5 219 29.2
SGA_v2.0_scaffold66G22424 Striga asiatica HOM05D050165 ORTHO05D008293 8.9e-07 58.5 240 27.5
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 1.2e-06 58.2 222 31.1
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 1.5e-06 57.8 218 28.0
CDE05G1157 Ceratophyllum demersum HOM05D007665 ORTHO05D008293 1.5e-06 57.8 241 29.0
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 1.5e-06 57.8 224 29.5
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.5e-06 57.8 229 30.6
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 2.0e-06 57.4 220 29.5
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 2.0e-06 57.4 220 28.2
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 2.6e-06 57.0 227 27.3
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 3.4e-06 56.6 192 27.1
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 3.4e-06 56.6 241 28.6
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 3.4e-06 56.6 234 28.2
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 5.8e-06 55.8 233 25.3
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 7.5e-06 55.5 226 26.1
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 7.5e-06 55.5 142 28.2
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 9.9e-06 55.1 238 27.3
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 9.9e-06 55.1 229 30.1
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 9.9e-06 55.1 240 30.8


User provided reference genes

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