Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 2.2e-118 429.1 238 100.0
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 3.4e-103 378.6 238 89.1
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 5.9e-79 298.1 241 68.9
Duzib168G0188 Durio zibethinus HOM05D004960 ORTHO05D004696 4.0e-59 232.3 241 59.3
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 1.2e-52 210.7 234 50.4
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 8.9e-51 204.5 234 49.1
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 2.6e-50 203.0 238 51.7
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.2e-47 194.1 236 46.2
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 3.6e-44 182.6 237 47.3
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 4.0e-43 179.1 238 43.3
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 2.4e-40 169.9 240 45.4
PGR084G0002 Punica granatum HOM05D004960 ORTHO05D004696 2.4e-40 169.9 241 43.2
PGR142G0218 Punica granatum HOM05D004960 ORTHO05D004696 2.4e-40 169.9 241 43.2
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 4.1e-40 169.1 215 47.0
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 9.2e-40 167.9 233 45.5
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 6.0e-39 165.2 240 45.0
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.7e-38 163.7 236 44.1
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 1.7e-38 163.7 238 41.2
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 6.6e-38 161.8 235 45.1
THA.LOC104803513 Tarenaya hassleriana HOM05D004960 ORTHO05D004696 1.9e-37 160.2 233 42.9
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 3.3e-37 159.5 245 42.9
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 1.8e-35 153.7 240 41.7
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 2.0e-34 150.2 211 48.3
Cpa.g.c29666.2 Carica papaya HOM05D004960 ORTHO05D004696 5.8e-34 148.7 237 43.9
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 1.3e-33 147.5 238 41.6
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.3e-33 147.5 164 50.0
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 2.2e-33 146.7 236 39.4
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 2.9e-33 146.4 237 43.5
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 1.1e-32 144.4 240 42.9
BcaB03g16662 Brassica carinata HOM05D004960 ORTHO05D004696 4.6e-31 139.0 230 39.6
BcaC04g21483 Brassica carinata HOM05D004960 ORTHO05D004696 4.6e-31 139.0 230 39.6
C09p31280 Brassica napus HOM05D004960 ORTHO05D004696 4.6e-31 139.0 230 39.6
Sp3g32170 Schrenkiella parvula HOM05D004960 ORTHO05D004696 2.3e-30 136.7 229 39.7
BolC7t40796H Brassica oleracea HOM05D004960 ORTHO05D004696 3.0e-30 136.3 230 39.1
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 3.0e-30 136.3 240 37.1
C07p04050 Brassica napus HOM05D004960 ORTHO05D004696 5.1e-30 135.6 230 38.7
A07p01900 Brassica napus HOM05D004960 ORTHO05D004696 1.9e-29 133.7 231 39.4
A09p12040 Brassica napus HOM05D004960 ORTHO05D004696 1.9e-29 133.7 229 38.4
BraA07t27990Z Brassica rapa HOM05D004960 ORTHO05D004696 1.9e-29 133.7 231 39.4
BraA09t36847Z Brassica rapa HOM05D004960 ORTHO05D004696 1.9e-29 133.7 229 38.4
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.5e-29 133.3 241 34.4
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.5e-29 133.3 241 34.4
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 4.3e-29 132.5 239 39.3
BcaB07g31648 Brassica carinata HOM05D004960 ORTHO05D004696 5.6e-29 132.1 229 38.4
BcaC04g22889 Brassica carinata HOM05D004960 ORTHO05D004696 5.6e-29 132.1 229 38.4
C09p14170 Brassica napus HOM05D004960 ORTHO05D004696 5.6e-29 132.1 229 38.4
BolC9t54315H Brassica oleracea HOM05D004960 ORTHO05D004696 5.6e-29 132.1 229 38.4
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 9.6e-29 131.3 243 39.1
COL.COLO4_16058 Corchorus olitorius HOM05D007179 ORTHO05D009124 1.6e-28 130.6 247 43.7
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 2.1e-28 130.2 239 36.8
Thhalv10022778m.g Eutrema salsugineum HOM05D004960 ORTHO05D004696 4.7e-28 129.0 225 38.7
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 3.1e-27 126.3 248 37.1
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 3.1e-27 126.3 248 37.1
AT2G18680 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 5.3e-27 125.6 229 37.1
BolC9t55984H Brassica oleracea HOM05D004960 ORTHO05D004696 5.3e-27 125.6 230 37.8
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.2e-26 124.4 244 38.1
AL3G52080 Arabidopsis lyrata HOM05D004960 ORTHO05D004696 3.4e-26 122.9 226 38.9
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 3.4e-26 122.9 229 38.4
AT2G18690 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 2.2e-25 120.2 234 35.5
Carub.0003s3294 Capsella rubella HOM05D004960 ORTHO05D004696 4.9e-25 119.0 222 38.3
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 1.9e-24 117.1 234 36.8
CARHR109270 Cardamine hirsuta HOM05D004960 ORTHO05D004696 3.2e-24 116.3 234 38.5
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.2e-23 114.4 221 35.7
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.1e-23 113.6 230 35.2
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.7e-23 113.2 235 33.6
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 4.6e-23 112.5 246 37.4
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 6.0e-23 112.1 230 37.4
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 1.7e-22 110.5 228 33.8
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 2.3e-22 110.2 220 35.0
Dinv42772 Davidia involucrata HOM05D004960 ORTHO05D004696 3.0e-22 109.8 202 43.1
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 3.0e-22 109.8 130 51.5
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 5.1e-22 109.0 166 39.8
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.1e-21 107.8 233 33.5
A04p05570 Brassica napus HOM05D004960 ORTHO05D004696 2.5e-21 106.7 203 38.9
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.5e-21 106.7 241 33.6
A06p33120 Brassica napus HOM05D004960 ORTHO05D004696 4.3e-21 105.9 236 36.0
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 5.6e-21 105.5 234 33.3
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.3e-20 104.4 244 34.8
C03p59340 Brassica napus HOM05D004960 ORTHO05D004696 1.6e-20 104.0 242 36.8
BraA04t16256Z Brassica rapa HOM05D004960 ORTHO05D004696 1.6e-20 104.0 223 36.3
BraA06t26242Z Brassica rapa HOM05D004960 ORTHO05D004696 1.6e-20 104.0 238 36.1
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.6e-20 104.0 243 33.3
C04p38300 Brassica napus HOM05D004960 ORTHO05D004696 2.8e-20 103.2 222 35.1
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 4.8e-20 102.4 232 32.8
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 6.2e-20 102.1 240 33.3
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 8.1e-20 101.7 235 32.8
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 1.8e-19 100.5 243 30.0
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 5.3e-19 99.0 241 36.5
ECA240G0411 Erigeron canadensis HOM05D004960 ORTHO05D004696 1.2e-18 97.8 203 36.0
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 2.6e-18 96.7 243 32.1
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.4e-18 96.3 233 34.8
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 7.6e-18 95.1 240 29.2
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.7e-17 94.0 227 30.8
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 2.9e-17 93.2 241 32.8
BcaB08g34825 Brassica carinata HOM05D004960 ORTHO05D004696 4.9e-17 92.4 236 34.7
Nn1g04315 Nelumbo nucifera HOM05D004960 ORTHO05D004696 4.9e-17 92.4 234 31.6
Oeu037995.1 Olea europaea HOM05D004960 ORTHO05D004696 4.9e-17 92.4 166 38.6
BcaC01g02853 Brassica carinata HOM05D004960 ORTHO05D004696 6.4e-17 92.0 236 33.9
BolC3t18198H Brassica oleracea HOM05D004960 ORTHO05D004696 6.4e-17 92.0 236 33.9
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 8.4e-17 91.7 228 32.0
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.1e-16 91.3 234 32.5
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 1.9e-16 90.5 220 30.0
HanXRQChr03g0068521 Helianthus annuus HOM05D004960 ORTHO05D004696 3.2e-16 89.7 239 29.3
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.2e-16 89.7 233 32.6
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 4.2e-16 89.4 234 30.8
Aqoxy7G03206 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 7.1e-16 88.6 224 29.5
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 2.1e-15 87.0 230 28.3
Carub.0003s2660 Capsella rubella HOM05D004960 ORTHO05D004696 3.5e-15 86.3 226 33.6
BcaC02g09087 Brassica carinata HOM05D004960 ORTHO05D004696 7.9e-15 85.1 221 31.2
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 7.9e-15 85.1 224 32.1
HanXRQChr03g0068481 Helianthus annuus HOM05D004960 ORTHO05D004696 7.9e-15 85.1 239 27.2
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 2.3e-14 83.6 221 32.1
RcHm_v2.0_Chr4g0404701 Rosa chinensis HOM05D004960 ORTHO05D004696 5.1e-14 82.4 154 39.6
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 6.7e-14 82.0 238 29.8
SalBow6G0476 Salvia bowleyana HOM05D004960 ORTHO05D004696 1.5e-13 80.9 215 34.4
Carub.0003s3295 Capsella rubella HOM05D004960 ORTHO05D004696 3.3e-13 79.7 204 32.4
Potri.010G250300 Populus trichocarpa HOM05D004960 ORTHO05D004696 7.4e-13 78.6 237 29.1
Migut.K00270 Erythranthe guttata HOM05D004960 ORTHO05D004696 9.6e-13 78.2 215 28.4
Peaxi162Scf00457g00315 Petunia axillaris HOM05D004960 ORTHO05D004696 2.1e-12 77.0 129 38.0
TAR626G1398 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.8e-11 73.9 234 26.9
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 6.9e-11 72.0 239 25.1
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 9.0e-11 71.6 221 33.0
Actinidia35990 Actinidia chinensis HOM05D004960 ORTHO05D004696 1.2e-10 71.2 169 33.1
SalBow6G1594 Salvia bowleyana HOM05D004960 ORTHO05D004696 5.8e-10 68.9 153 34.6
MBI14_g30697_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.3e-09 67.8 216 28.2
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 2.2e-09 67.0 239 25.9
TAR626G1419 Trochodendron aralioides HOM05D004960 ORTHO05D004696 8.4e-09 65.1 223 28.3
CSS0038346 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 1.4e-08 64.3 227 27.3
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 1.4e-08 64.3 217 30.4
MBI14_g30699_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.9e-08 63.9 221 27.1
CSS0022952 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 2.5e-08 63.5 227 27.3
BcaC06g36453 Brassica carinata HOM05D004960 ORTHO05D004696 3.2e-08 63.2 158 31.6
Eucgr.J03153 Eucalyptus grandis HOM05D004960 ORTHO05D004696 7.1e-08 62.0 234 25.2
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 9.3e-08 61.6 217 29.5
Actinidia38795 Actinidia chinensis HOM05D004960 ORTHO05D004696 1.2e-07 61.2 224 28.1
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 1.2e-07 61.2 217 29.5
PGR042G3842 Punica granatum HOM05D001062 ORTHO05D000884 1.2e-07 61.2 244 25.0
Migut.J01431 Erythranthe guttata HOM05D015143 ORTHO05D004696 1.6e-07 60.8 249 28.9
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 4.6e-07 59.3 217 28.1
MBI14_g30691_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.6e-07 59.3 243 29.2
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 6.0e-07 58.9 216 26.4
HanXRQChr03g0074181 Helianthus annuus HOM05D012567 ORTHO05D004696 6.0e-07 58.9 151 30.5
Migut.J01428 Erythranthe guttata HOM05D015143 ORTHO05D004696 7.9e-07 58.5 224 32.1
Migut.J01429 Erythranthe guttata HOM05D015143 ORTHO05D004696 1.0e-06 58.2 200 34.5
Gohir.D04G031300 Gossypium hirsutum HOM05D001062 ORTHO05D000884 1.3e-06 57.8 244 27.0
Gorai.012G035400 Gossypium raimondii HOM05D001062 ORTHO05D000884 1.3e-06 57.8 244 27.0
Dinv24369 Davidia involucrata HOM05D001062 ORTHO05D000884 1.8e-06 57.4 231 24.7
Manes.13G066000 Manihot esculenta HOM05D004960 ORTHO05D004696 2.3e-06 57.0 222 27.5
Gohir.A05G384300 Gossypium hirsutum HOM05D001062 ORTHO05D000884 3.0e-06 56.6 244 27.0
Migut.J01427 Erythranthe guttata HOM05D015143 ORTHO05D004696 3.9e-06 56.2 227 32.2
PSO063G2425 Papaver somniferum HOM05D004960 ORTHO05D004696 8.7e-06 55.1 238 26.9


User provided reference genes

Program Settings