Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G155000 Theobroma cacao HOM05D003975 ORTHO05D009899 4.7e-79 297.7 145 100.0
Thecc.09G275700 Theobroma cacao HOM05D003975 ORTHO05D009899 5.6e-40 167.9 79 97.5
Gorai.001G124000 Gossypium raimondii HOM05D003975 ORTHO05D009899 3.1e-38 162.2 81 88.9
GSVIVG01036058001 Vitis vinifera HOM05D003975 ORTHO05D009899 9.0e-38 160.6 86 87.2
Gohir.A07G112200 Gossypium hirsutum HOM05D003975 ORTHO05D009899 2.6e-37 159.1 87 82.8
Gohir.D07G115700 Gossypium hirsutum HOM05D003975 ORTHO05D009899 4.5e-37 158.3 79 88.6
Duzib150G1666 Durio zibethinus HOM05D003975 ORTHO05D009899 5.8e-37 157.9 79 91.1
QL01p011344 Quercus lobata HOM05D003975 ORTHO05D009899 9.9e-37 157.1 79 86.1
ClCG02G022390 Citrullus lanatus HOM05D003975 ORTHO05D009899 2.2e-36 156.0 81 88.9
Haze_23328 Corylus avellana HOM05D003975 ORTHO05D009899 1.9e-35 152.9 79 83.5
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.9e-35 152.9 83 86.7
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 3.2e-35 152.1 104 74.0
RcHm_v2.0_Chr5g0047291 Rosa chinensis HOM05D003975 ORTHO05D009899 5.4e-35 151.4 79 87.3
Cfa009967 Carpinus fangiana HOM05D003975 ORTHO05D009899 7.1e-35 151.0 79 81.0
Dinv08130 Davidia involucrata HOM05D003975 ORTHO05D009899 1.2e-34 150.2 82 85.4
Eucgr.J00540 Eucalyptus grandis HOM05D003975 ORTHO05D009899 1.2e-34 150.2 79 86.1
Sed0002680 Sechium edule HOM05D003975 ORTHO05D009899 1.2e-34 150.2 116 68.1
Atru.chr3.3141 Acer truncatum HOM05D003975 ORTHO05D009899 2.7e-34 149.1 79 87.3
Solyc11g068810.2 Solanum lycopersicum HOM05D003975 ORTHO05D009899 2.7e-34 149.1 79 84.8
Sopen11g027530 Solanum pennellii HOM05D003975 ORTHO05D009899 2.7e-34 149.1 79 84.8
Hma1.2p1_0793F.1_g218650 Hydrangea macrophylla HOM05D003975 ORTHO05D009899 6.0e-34 147.9 79 86.1
CSS0027551 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009899 7.9e-34 147.5 79 84.8
SalBow6G3564 Salvia bowleyana HOM05D003975 ORTHO05D009899 7.9e-34 147.5 79 78.5
Migut.D02414 Erythranthe guttata HOM05D003975 ORTHO05D009899 1.0e-33 147.1 81 79.0
MD03G1152900 Malus domestica HOM05D003975 ORTHO05D009899 2.3e-33 146.0 79 83.5
PGSC0003DMG400019630 Solanum tuberosum HOM05D003975 ORTHO05D009899 2.3e-33 146.0 79 83.5
MELO3C014515.2 Cucumis melo HOM05D003975 ORTHO05D009899 5.1e-33 144.8 79 84.8
Prupe.6G140000 Prunus persica HOM05D003975 ORTHO05D009899 6.7e-33 144.4 79 83.5
Nitab4.5_0000893g0020 Nicotiana tabacum HOM05D003975 ORTHO05D009899 1.9e-32 142.9 79 82.3
Cc01_g08600 Coffea canephora HOM05D003975 ORTHO05D009899 3.3e-32 142.1 81 77.8
Nitab4.5_0001135g0190 Nicotiana tabacum HOM05D003975 ORTHO05D009899 4.3e-32 141.7 79 81.0
COL.COLO4_22656 Corchorus olitorius HOM05D003975 ORTHO05D009899 5.6e-32 141.4 86 77.9
PSO339G0200 Papaver somniferum HOM05D003975 ORTHO05D009899 5.6e-32 141.4 81 75.3
PSO384G0061 Papaver somniferum HOM05D003975 ORTHO05D009899 5.6e-32 141.4 81 75.3
TWI31G0968 Tripterygium wilfordii HOM05D003975 ORTHO05D009899 7.4e-32 141.0 78 84.6
CAN.G745.37 Capsicum annuum HOM05D003975 ORTHO05D009899 9.6e-32 140.6 79 79.7
Potri.004G201000 Populus trichocarpa HOM05D003975 ORTHO05D009899 9.6e-32 140.6 86 75.6
MBI01_g04527_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 1.6e-31 139.8 79 74.7
CAN.G745.38 Capsicum annuum HOM05D003975 ORTHO05D009899 3.7e-31 138.7 79 78.5
TAR633G2299 Trochodendron aralioides HOM05D003975 ORTHO05D009899 3.7e-31 138.7 72 81.9
Potri.009G162200 Populus trichocarpa HOM05D003975 ORTHO05D009899 4.8e-31 138.3 86 73.3
CANSAT54G1521 Cannabis sativa HOM05D003975 ORTHO05D009899 6.2e-31 137.9 75 81.3
CsaV3_6G038520 Cucumis sativus L. HOM05D003975 ORTHO05D009899 1.1e-30 137.1 74 82.4
HanXRQChr09g0248811 Helianthus annuus HOM05D003975 ORTHO05D009899 1.1e-30 137.1 78 73.1
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 6.9e-30 134.4 86 72.1
Aqoxy4G02677 Aquilegia oxysepala HOM05D003975 ORTHO05D009899 1.2e-29 133.7 85 68.2
Nn6g34748 Nelumbo nucifera HOM05D003975 ORTHO05D009899 1.5e-29 133.3 82 74.4
Peaxi162Scf00224g00092 Petunia axillaris HOM05D003975 ORTHO05D009899 1.5e-29 133.3 70 81.4
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 2.6e-29 132.5 86 69.8
Sabra15G0031600 Salix brachista HOM05D003975 ORTHO05D009899 2.6e-29 132.5 86 69.8
Sabra15G0048400 Salix brachista HOM05D003975 ORTHO05D009899 2.6e-29 132.5 86 69.8
Sabra15G0060100 Salix brachista HOM05D003975 ORTHO05D009899 2.6e-29 132.5 86 69.8
ATR0772G086 Amborella trichopoda HOM05D003975 ORTHO05D009899 4.5e-29 131.7 86 66.3
Lalb_Chr09g0335081 Lupinus albus HOM05D003975 ORTHO05D009899 4.5e-29 131.7 79 74.7
ECA238G1997 Erigeron canadensis HOM05D003975 ORTHO05D009899 5.8e-29 131.3 79 70.9
DCAR_013070 Daucus carota HOM05D003975 ORTHO05D009899 1.3e-28 130.2 80 72.5
Sabra15G0046300 Salix brachista HOM05D003975 ORTHO05D009899 1.3e-28 130.2 85 69.4
Sabra15G0052000 Salix brachista HOM05D003975 ORTHO05D009899 1.3e-28 130.2 85 69.4
Sabra15G0053200 Salix brachista HOM05D003975 ORTHO05D009899 1.3e-28 130.2 85 69.4
Sabra15G0053900 Salix brachista HOM05D003975 ORTHO05D009899 1.3e-28 130.2 85 69.4
Lsat_1_v5_gn_2_56181 Lactuca sativa HOM05D000240 ORTHO05D001153 1.7e-28 129.8 105 57.1
Ciclev10029713m.g Citrus clementina HOM05D003975 ORTHO05D009899 2.9e-28 129.0 84 76.2
Glyma.08G290000 Glycine max HOM05D003975 ORTHO05D009899 3.8e-28 128.6 80 70.0
Phvul.003G054000 Phaseolus vulgaris HOM05D003975 ORTHO05D009899 1.1e-27 127.1 80 67.5
unitig_0.g1469 Utricularia gibba HOM05D003975 ORTHO05D009899 1.1e-27 127.1 79 70.9
arahy.Tifrunner.gnm1.ann1.QQFJ2J Arachis hypogaea HOM05D003975 ORTHO05D009899 3.2e-27 125.6 79 70.9
arahy.Tifrunner.gnm1.ann1.V52YDZ Arachis hypogaea HOM05D003975 ORTHO05D009899 3.2e-27 125.6 79 70.9
Glyma.18G134500 Glycine max HOM05D003975 ORTHO05D009899 4.2e-27 125.2 80 67.5
THA.LOC104799562 Tarenaya hassleriana HOM05D003975 ORTHO05D009899 4.2e-27 125.2 80 71.2
AUR62011465 Chenopodium quinoa HOM05D003975 ORTHO05D009899 5.5e-27 124.8 79 67.1
Sc03g0003650 Simmondsia chinensis HOM05D003975 ORTHO05D009899 5.5e-27 124.8 79 72.2
A10p18580 Brassica napus HOM05D003975 ORTHO05D009899 7.9e-26 120.9 81 67.9
BcaC04g19558 Brassica carinata HOM05D003975 ORTHO05D009899 1.8e-25 119.8 81 66.7
C09p54430 Brassica napus HOM05D003975 ORTHO05D009899 1.8e-25 119.8 81 66.7
BolC9t58312H Brassica oleracea HOM05D003975 ORTHO05D009899 1.8e-25 119.8 81 66.7
CARHR191340 Cardamine hirsuta HOM05D003975 ORTHO05D009899 1.8e-25 119.8 81 70.4
Sp6g23020 Schrenkiella parvula HOM05D003975 ORTHO05D009899 1.8e-25 119.8 81 70.4
AT5G22210 Arabidopsis thaliana HOM05D003975 ORTHO05D009899 3.9e-25 118.6 81 69.1
EL10Ac9g21860 Beta vulgaris HOM05D003975 ORTHO05D009899 3.9e-25 118.6 80 65.0
AUR62016590 Chenopodium quinoa HOM05D003975 ORTHO05D009899 3.9e-25 118.6 79 64.6
Ah.01g020290 Amaranthus hybridus HOM05D003975 ORTHO05D009899 6.7e-25 117.9 80 65.0
BraA10t43938Z Brassica rapa HOM05D003975 ORTHO05D009899 6.7e-25 117.9 81 66.7
Carub.0006s1995 Capsella rubella HOM05D003975 ORTHO05D009899 3.3e-24 115.5 81 66.7
AL6G33210 Arabidopsis lyrata HOM05D003975 ORTHO05D009899 4.3e-24 115.2 81 67.9
BcaB08g36448 Brassica carinata HOM05D003975 ORTHO05D009899 7.4e-24 114.4 81 65.4
HPP92_009773 Vanilla planifolia HOM05D000917 ORTHO05D009899 2.1e-23 112.8 90 54.4
TAR268G0001 Trochodendron aralioides HOM05D001423 ORTHO05D001412 6.2e-23 111.3 72 73.6
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 1.1e-22 110.5 85 55.3
MBI04_g20761_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 5.1e-09 65.1 47 55.3
SEGI_31848 Sequoiadendron giganteum HOM05D003975 ORTHO05D009899 2.2e-07 59.7 42 57.1
MBI18_g28520_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 2.4e-06 56.2 36 58.3


User provided reference genes

Program Settings