Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 3.2e-209 731.5 362 100.0
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 7.7e-171 604.0 362 82.3
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 7.7e-171 604.0 362 82.3
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 1.9e-169 599.4 362 81.5
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 7.2e-145 517.7 360 70.6
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 7.2e-145 517.7 360 70.6
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 9.4e-145 517.3 366 68.9
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.1e-140 502.3 362 69.3
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.7e-139 499.2 362 68.2
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 1.7e-138 496.5 355 68.2
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 1.5e-137 493.4 361 67.0
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.5e-137 491.5 364 68.7
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 5.5e-137 491.5 364 67.9
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 2.1e-136 489.6 362 66.0
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 1.0e-135 487.3 353 69.7
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 1.3e-133 480.3 355 67.3
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 9.2e-132 474.2 348 68.7
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 1.2e-131 473.8 363 66.7
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 7.8e-131 471.1 364 66.5
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 1.3e-130 470.3 364 64.6
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 8.6e-130 467.6 368 64.9
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 8.6e-130 467.6 365 65.5
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 1.1e-129 467.2 350 66.9
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 1.5e-129 466.8 352 67.0
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 3.3e-129 465.7 390 62.8
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 5.6e-129 464.9 358 63.7
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 7.3e-129 464.5 352 66.5
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 1.6e-128 463.4 362 65.2
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 2.1e-128 463.0 361 64.8
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 4.7e-128 461.8 353 66.6
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 2.3e-127 459.5 362 64.6
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 3.0e-127 459.1 351 65.8
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 3.0e-127 459.1 351 66.4
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 4.0e-127 458.8 353 67.1
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 5.2e-127 458.4 362 63.5
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 5.2e-127 458.4 353 65.4
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 1.2e-126 457.2 362 64.1
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 1.2e-126 457.2 360 63.3
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 2.0e-126 456.4 364 65.7
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 2.0e-126 456.4 344 66.0
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 2.6e-126 456.1 354 66.4
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 5.7e-126 454.9 351 65.2
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 9.8e-126 454.1 365 62.7
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 9.8e-126 454.1 365 62.7
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 3.7e-125 452.2 353 64.0
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 3.7e-125 452.2 359 63.5
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 6.4e-125 451.4 363 65.0
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 6.4e-125 451.4 366 63.7
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 8.3e-125 451.1 373 63.5
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 8.3e-125 451.1 360 63.3
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 8.3e-125 451.1 362 63.3
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 3.2e-124 449.1 352 64.2
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 4.1e-124 448.7 353 63.7
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 4.1e-124 448.7 353 63.5
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 7.0e-124 448.0 362 62.7
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 7.0e-124 448.0 366 64.8
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 9.2e-124 447.6 362 62.2
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 9.2e-124 447.6 362 64.4
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 1.2e-123 447.2 353 63.5
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 2.7e-123 446.0 364 62.1
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 2.7e-123 446.0 369 62.6
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 5.9e-123 444.9 357 63.0
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 7.8e-123 444.5 357 64.1
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 1.7e-122 443.4 373 63.3
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 3.9e-122 442.2 357 60.5
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.5e-121 439.5 362 63.3
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 2.8e-120 436.0 355 63.1
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 3.6e-120 435.6 362 61.6
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 4.7e-120 435.3 357 62.5
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 1.4e-119 433.7 384 60.2
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 1.8e-119 433.3 367 60.8
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 2.3e-119 433.0 355 62.8
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 8.9e-119 431.0 353 60.3
C07p58240 Brassica napus HOM05D006038 ORTHO05D007547 1.5e-118 430.3 334 65.3
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 2.6e-118 429.5 338 65.7
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 2.6e-118 429.5 355 62.8
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 3.4e-118 429.1 378 58.2
BolC7t46282H Brassica oleracea HOM05D006038 ORTHO05D007547 4.4e-118 428.7 334 65.3
A03p60370 Brassica napus HOM05D006038 ORTHO05D007547 1.7e-117 426.8 334 65.0
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 1.7e-117 426.8 353 59.8
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 3.7e-117 425.6 364 59.3
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 1.4e-116 423.7 357 61.9
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 1.3e-114 417.2 356 61.2
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 6.6e-114 414.8 358 58.4
BcaNung01557 Brassica carinata HOM05D006038 ORTHO05D007547 1.5e-113 413.7 335 63.6
MBI15_g26068_MAGBIO Magnolia biondii HOM05D006038 ORTHO05D007547 1.1e-111 407.5 343 62.1
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 8.3e-109 397.9 361 57.3
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 6.0e-107 391.7 357 57.7
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 1.1e-103 380.9 360 57.2
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 1.4e-103 380.6 357 56.3
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 3.4e-102 375.9 354 57.3
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 1.1e-100 370.9 363 55.4
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 3.2e-100 369.4 344 54.9
COL.COLO4_05400 Corchorus olitorius HOM05D006038 ORTHO05D007547 2.1e-96 356.7 217 80.6
Thhalv10025548m.g Eutrema salsugineum HOM05D006038 ORTHO05D007547 4.3e-89 332.4 282 60.6
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 3.6e-88 329.3 356 51.7
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 4.8e-88 328.9 239 67.4
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 6.2e-88 328.6 249 65.1
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 4.9e-85 318.9 352 51.1
Dinv41342 Davidia involucrata HOM05D006038 ORTHO05D007547 1.5e-81 307.4 230 65.7
SMO367G0193 Selaginella moellendorffii HOM05D006038 ORTHO05D007547 2.5e-73 280.0 353 43.1
SHI18668 Sapria himalayana HOM05D006038 ORTHO05D007547 9.6e-73 278.1 320 49.1
arahy.Tifrunner.gnm1.ann1.3R6I6F Arachis hypogaea HOM05D006038 ORTHO05D007547 4.8e-72 275.8 231 63.6
Oeu027617.1 Olea europaea HOM05D006038 ORTHO05D007547 5.8e-70 268.9 163 76.1
Cfa020780 Carpinus fangiana HOM05D006038 ORTHO05D007547 9.7e-65 251.5 221 60.2
AagrBONN_evm.TU.Sc2ySwM_117.2538 Anthoceros agrestis HOM05D006038 ORTHO05D007547 3.7e-64 249.6 374 39.3
CSS0027410 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.3e-63 245.7 217 60.4
CSS0009266 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 5.0e-61 239.2 217 57.6
CSS0013086 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.1e-60 238.0 217 59.0
Lj7A464G38 Lonicera japonica HOM05D006038 ORTHO05D007547 8.2e-56 221.9 148 75.0
A01p07320 Brassica napus HOM05D006038 ORTHO05D007547 4.2e-52 209.5 245 49.8
Lj7A464T42 Lonicera japonica HOM05D006038 ORTHO05D007547 4.2e-52 209.5 219 51.1
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 5.3e-47 192.6 380 33.2
SEGI_08614 Sequoiadendron giganteum HOM05D006038 ORTHO05D007547 1.5e-46 191.0 143 62.2
CSS0022095 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.6e-46 190.3 122 77.0
CSS0024276 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 8.5e-37 158.7 217 44.7
Pp3c6_28770 Physcomitrium patens HOM05D006038 ORTHO05D007547 2.3e-34 150.6 168 44.6
CSS0047172 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 9.8e-25 118.6 66 83.3
CSS0031036 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.2e-22 111.7 66 77.3
CSS0034156 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.1e-19 99.4 66 72.7
Cre02.g090600 Chlamydomonas reinhardtii HOM05D006038 ORTHO05D007547 2.0e-14 84.3 157 36.3
BcaNung03435 Brassica carinata HOM05D001147 ORTHO05D000823 2.7e-14 84.0 109 46.8
Zm00001eb124580 Zea mays HOM05D006038 ORTHO05D007547 3.3e-12 77.0 52 65.4
Zm00001eb038770 Zea mays HOM05D006038 ORTHO05D007547 1.6e-11 74.7 53 66.0
Zm00001eb046820 Zea mays HOM05D006038 ORTHO05D007547 1.6e-11 74.7 53 66.0
Zm00001eb051760 Zea mays HOM05D006038 ORTHO05D007547 1.6e-11 74.7 53 66.0
Zm00001eb369920 Zea mays HOM05D006038 ORTHO05D007547 4.7e-11 73.2 57 59.6
Zm00001eb253640 Zea mays HOM05D006038 ORTHO05D007547 6.1e-11 72.8 52 65.4
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 7.0e-07 59.3 49 59.2
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 7.0e-07 59.3 49 59.2
Zm00001eb343430 Zea mays HOM05D002913 ORTHO05D020952 7.0e-07 59.3 49 59.2
Zm00001eb354900 Zea mays HOM05D002913 ORTHO05D026003 7.0e-07 59.3 49 59.2


User provided reference genes

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