Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G154100 Theobroma cacao HOM05D006256 ORTHO05D007833 5.0e-79 297.7 155 100.0
Duzib187G1001 Durio zibethinus HOM05D006256 ORTHO05D007833 2.6e-67 258.8 155 87.7
COL.COLO4_05401 Corchorus olitorius HOM05D006256 ORTHO05D007833 7.0e-65 250.8 155 85.2
Gohir.D08G098900 Gossypium hirsutum HOM05D006256 ORTHO05D007833 2.7e-56 222.2 161 78.9
Gohir.A08G087800 Gossypium hirsutum HOM05D006256 ORTHO05D007833 8.6e-55 217.2 161 77.6
Gorai.004G106500 Gossypium raimondii HOM05D006256 ORTHO05D007833 8.6e-55 217.2 161 77.6
Potri.018G102700 Populus trichocarpa HOM05D006256 ORTHO05D007833 1.6e-48 196.4 148 73.6
Manes.14G113600 Manihot esculenta HOM05D006256 ORTHO05D007833 2.1e-48 196.1 153 73.2
Cpa.g.sc199.16 Carica papaya HOM05D006256 ORTHO05D007833 8.7e-47 190.7 152 74.3
Nn2g12458 Nelumbo nucifera HOM05D006256 ORTHO05D007833 6.2e-45 184.5 148 72.3
TAR626G0939 Trochodendron aralioides HOM05D006256 ORTHO05D007833 2.4e-44 182.6 148 70.3
Atru.chr7.353 Acer truncatum HOM05D006256 ORTHO05D007833 9.0e-44 180.6 156 69.9
TAR383G0166 Trochodendron aralioides HOM05D006256 ORTHO05D007833 5.8e-43 177.9 128 75.0
CiPaw.16G106600 Carya illinoinensis HOM05D006256 ORTHO05D007833 7.6e-43 177.6 125 77.6
CANSAT11G0095 Cannabis sativa HOM05D006256 ORTHO05D007833 2.9e-42 175.6 156 66.0
CiPaw.15G164300 Carya illinoinensis HOM05D006256 ORTHO05D007833 2.9e-42 175.6 133 72.9
RcHm_v2.0_Chr4g0405501 Rosa chinensis HOM05D006256 ORTHO05D007833 3.8e-42 175.3 158 64.6
Aa31LG7G12680 Aethionema arabicum HOM05D006256 ORTHO05D007833 4.9e-42 174.9 152 65.1
Sabra18G0088200 Salix brachista HOM05D006256 ORTHO05D007833 4.9e-42 174.9 148 67.6
Gohir.A04G058552 Gossypium hirsutum HOM05D006256 ORTHO05D007833 6.4e-42 174.5 146 70.5
Prupe.1G102100 Prunus persica HOM05D006256 ORTHO05D007833 6.4e-42 174.5 149 65.8
FAN17G2907 Fragaria x ananassa HOM05D006256 ORTHO05D007833 1.1e-41 173.7 158 65.2
FAN17G2911 Fragaria x ananassa HOM05D006256 ORTHO05D007833 1.1e-41 173.7 158 65.2
PGR102G0560 Punica granatum HOM05D006256 ORTHO05D007833 1.1e-41 173.7 159 64.2
FAN07G0991 Fragaria x ananassa HOM05D006256 ORTHO05D007833 1.4e-41 173.3 158 64.6
Ciclev10009792m.g Citrus clementina HOM05D006256 ORTHO05D007833 2.4e-41 172.6 148 67.6
THA.LOC104803911 Tarenaya hassleriana HOM05D006256 ORTHO05D007833 1.2e-40 170.2 159 63.5
TWI32G1056 Tripterygium wilfordii HOM05D006256 ORTHO05D007833 2.1e-40 169.5 129 69.8
FAN22G0392 Fragaria x ananassa HOM05D006256 ORTHO05D007833 3.5e-40 168.7 158 63.9
Haze_19139 Corylus avellana HOM05D006256 ORTHO05D007833 6.0e-40 167.9 150 67.3
Cfa020783 Carpinus fangiana HOM05D006256 ORTHO05D007833 1.3e-39 166.8 150 67.3
MD04G1052200 Malus domestica HOM05D006256 ORTHO05D007833 2.3e-39 166.0 154 66.2
arahy.Tifrunner.gnm1.ann1.6DRS7R Arachis hypogaea HOM05D006256 ORTHO05D007833 3.9e-39 165.2 145 66.9
Eucgr.C02515 Eucalyptus grandis HOM05D006256 ORTHO05D007833 3.9e-39 165.2 153 61.4
FvH4_4g09690 Fragaria vesca HOM05D006256 ORTHO05D007833 3.9e-39 165.2 152 63.2
VMungo1215G1943 Vigna mungo HOM05D006256 ORTHO05D007833 3.9e-39 165.2 152 65.8
CARHR118260 Cardamine hirsuta HOM05D006256 ORTHO05D007833 5.1e-39 164.9 150 64.7
MELO3C010199.2 Cucumis melo HOM05D006256 ORTHO05D007833 5.1e-39 164.9 146 66.4
Lj4g0007171 Lotus japonicus HOM05D006256 ORTHO05D007833 1.1e-38 163.7 153 66.0
Phvul.003G153700 Phaseolus vulgaris HOM05D006256 ORTHO05D007833 1.1e-38 163.7 150 66.0
arahy.Tifrunner.gnm1.ann1.RJ4A7B Arachis hypogaea HOM05D006256 ORTHO05D007833 1.5e-38 163.3 153 65.4
ClCG06G012650 Citrullus lanatus HOM05D006256 ORTHO05D007833 1.5e-38 163.3 146 66.4
CsaV3_1G029200 Cucumis sativus L. HOM05D006256 ORTHO05D007833 1.5e-38 163.3 146 65.8
Sed0025015 Sechium edule HOM05D006256 ORTHO05D007833 1.5e-38 163.3 149 65.8
Glyma.02G206700 Glycine max HOM05D006256 ORTHO05D007833 2.5e-38 162.5 136 69.1
AT2G24090 Arabidopsis thaliana HOM05D006256 ORTHO05D007833 5.6e-38 161.4 150 62.7
A04p18400 Brassica napus HOM05D006256 ORTHO05D007833 7.3e-38 161.0 119 73.9
BraA04t17452Z Brassica rapa HOM05D006256 ORTHO05D007833 7.3e-38 161.0 119 73.9
Dinv43283 Davidia involucrata HOM05D006256 ORTHO05D007833 1.6e-37 159.8 155 62.6
MBI15_g35737_MAGBIO Magnolia biondii HOM05D006256 ORTHO05D007833 2.1e-37 159.5 122 71.3
Eucgr.L01548 Eucalyptus grandis HOM05D006256 ORTHO05D007833 3.6e-37 158.7 153 60.1
AL4G14180 Arabidopsis lyrata HOM05D006256 ORTHO05D007833 8.1e-37 157.5 150 61.3
C04p53670 Brassica napus HOM05D006256 ORTHO05D007833 8.1e-37 157.5 149 63.1
BolC4t26923H Brassica oleracea HOM05D006256 ORTHO05D007833 1.1e-36 157.1 149 63.1
CDE05G2121 Ceratophyllum demersum HOM05D006256 ORTHO05D007833 1.1e-36 157.1 112 74.1
PSO170G3639 Papaver somniferum HOM05D006256 ORTHO05D007833 1.4e-36 156.8 153 63.4
Thhalv10000362m.g Eutrema salsugineum HOM05D006256 ORTHO05D007833 1.8e-36 156.4 149 63.8
Sp4g02990 Schrenkiella parvula HOM05D006256 ORTHO05D007833 1.8e-36 156.4 150 65.3
CDE02G1547 Ceratophyllum demersum HOM05D006256 ORTHO05D007833 2.4e-36 156.0 137 65.0
Carub.0004s0326 Capsella rubella HOM05D006256 ORTHO05D007833 3.1e-36 155.6 150 60.7
BcaC07g40961 Brassica carinata HOM05D006256 ORTHO05D007833 4.0e-36 155.2 119 71.4
C08p39560 Brassica napus HOM05D006256 ORTHO05D007833 5.3e-36 154.8 151 60.9
BolC8t51529H Brassica oleracea HOM05D006256 ORTHO05D007833 5.3e-36 154.8 151 60.9
Hma1.2p1_1084F.1_g255300 Hydrangea macrophylla HOM05D006256 ORTHO05D007833 1.2e-35 153.7 155 60.0
A09p56610 Brassica napus HOM05D006256 ORTHO05D007833 2.0e-35 152.9 149 61.7
BraA09t41052Z Brassica rapa HOM05D006256 ORTHO05D007833 2.0e-35 152.9 149 61.7
Glyma.17G071200 Glycine max HOM05D006256 ORTHO05D007833 4.5e-35 151.8 114 73.7
Aqoxy7G03320 Aquilegia oxysepala HOM05D006256 ORTHO05D007833 2.2e-34 149.4 153 60.8
PSO063G2398 Papaver somniferum HOM05D006256 ORTHO05D007833 2.2e-34 149.4 154 60.4
Actinidia38660 Actinidia chinensis HOM05D006256 ORTHO05D007833 1.9e-33 146.4 152 56.6
AUR62025373 Chenopodium quinoa HOM05D006256 ORTHO05D007833 1.9e-33 146.4 154 60.4
EL10Ac8g18906 Beta vulgaris HOM05D006256 ORTHO05D007833 4.2e-33 145.2 125 67.2
CSS0035436 Camellia sinensis var. sinensis HOM05D006256 ORTHO05D007833 3.5e-32 142.1 147 62.6
MSTRG.10713 Avicennia marina HOM05D006256 ORTHO05D007833 1.3e-31 140.2 151 55.6
Medtr4g130300 Medicago truncatula HOM05D006256 ORTHO05D007833 2.3e-31 139.4 132 62.9
Cc06_g14490 Coffea canephora HOM05D006256 ORTHO05D007833 3.9e-31 138.7 159 58.5
Lsat_1_v5_gn_5_88481 Lactuca sativa HOM05D006256 ORTHO05D007833 5.1e-31 138.3 122 65.6
HPP92_010352 Vanilla planifolia HOM05D006256 ORTHO05D007833 8.7e-31 137.5 146 58.9
Peaxi162Scf00563g00414 Petunia axillaris HOM05D006256 ORTHO05D007833 1.1e-30 137.1 124 62.9
Psat7g006560 Pisum sativum HOM05D006256 ORTHO05D007833 1.9e-30 136.3 154 58.4
AUR62028378 Chenopodium quinoa HOM05D006256 ORTHO05D007833 2.5e-30 136.0 153 60.1
Oeu010284.1 Olea europaea HOM05D006256 ORTHO05D007833 3.3e-30 135.6 154 54.5
SalBow1G2070 Salvia bowleyana HOM05D006256 ORTHO05D007833 3.3e-30 135.6 118 63.6
Migut.K00301 Erythranthe guttata HOM05D006256 ORTHO05D007833 7.4e-30 134.4 153 53.6
Lalb_Chr13g0300681 Lupinus albus HOM05D006256 ORTHO05D007833 7.4e-30 134.4 144 57.6
Migut.J01392 Erythranthe guttata HOM05D006256 ORTHO05D007833 1.6e-29 133.3 152 55.3
HanXRQChr10g0307761 Helianthus annuus HOM05D006256 ORTHO05D007833 2.1e-29 132.9 118 63.6
SGA_v2.0_scaffold222G42778 Striga asiatica HOM05D006256 ORTHO05D007833 2.8e-29 132.5 150 53.3
ECA234G3762 Erigeron canadensis HOM05D006256 ORTHO05D007833 3.7e-29 132.1 119 63.0
HanXRQChr12g0357751 Helianthus annuus HOM05D006256 ORTHO05D007833 3.7e-29 132.1 155 55.5
Nitab4.5_0001036g0150 Nicotiana tabacum HOM05D006256 ORTHO05D007833 3.7e-29 132.1 124 62.1
PGSC0003DMG400011211 Solanum tuberosum HOM05D006256 ORTHO05D007833 6.2e-29 131.3 152 56.6
Nitab4.5_0006744g0050 Nicotiana tabacum HOM05D006256 ORTHO05D007833 8.1e-29 131.0 124 61.3
Solyc07g006000.3 Solanum lycopersicum HOM05D006256 ORTHO05D007833 8.1e-29 131.0 152 56.6
Sopen07g002140 Solanum pennellii HOM05D006256 ORTHO05D007833 8.1e-29 131.0 152 56.6
vmacro06052 Vaccinium macrocarpon HOM05D006256 ORTHO05D007833 1.8e-28 129.8 150 52.0
Hund08959 Selenicereus undatus HOM05D006256 ORTHO05D007833 2.4e-28 129.4 159 54.7
SEGI_40166 Sequoiadendron giganteum HOM05D006256 ORTHO05D007833 3.1e-28 129.0 149 56.4
QL02p094215 Quercus lobata HOM05D006256 ORTHO05D007833 9.0e-28 127.5 128 63.3
CSS0023303 Camellia sinensis var. sinensis HOM05D006256 ORTHO05D007833 2.0e-27 126.3 126 61.9
Os06g0647100 Oryza sativa ssp. japonica HOM05D006256 ORTHO05D007833 2.0e-27 126.3 81 81.5
GSVIVG01012574001 Vitis vinifera HOM05D006256 ORTHO05D007833 3.4e-27 125.6 70 92.9
GSVIVG01012561001 Vitis vinifera HOM05D006256 ORTHO05D007833 1.0e-26 124.0 70 91.4
Zm00001eb386680 Zea mays HOM05D006256 ORTHO05D007833 2.2e-26 122.9 157 55.4
Dinv42817 Davidia involucrata HOM05D006256 ORTHO05D007833 3.8e-26 122.1 134 57.5
MBI15_g42789_MAGBIO Magnolia biondii HOM05D006256 ORTHO05D007833 8.4e-26 120.9 124 55.6
unitig_748.g7194 Utricularia gibba HOM05D006256 ORTHO05D007833 5.5e-25 118.2 124 57.3
BcaC02g08498 Brassica carinata HOM05D006256 ORTHO05D007833 7.1e-25 117.9 149 51.7
ATR0580G126 Amborella trichopoda HOM05D006256 ORTHO05D007833 4.3e-22 108.6 91 69.2
Actinidia33300 Actinidia chinensis HOM05D006256 ORTHO05D007833 7.4e-22 107.8 147 48.3
Ah.09g228670 Amaranthus hybridus HOM05D006256 ORTHO05D007833 1.1e-20 104.0 223 38.6
CBR_g46223 Chara braunii HOM05D006256 ORTHO05D007833 1.7e-18 96.7 76 68.4
TPR.G24835 Trifolium pratense HOM05D006256 ORTHO05D007833 3.8e-18 95.5 122 54.1
Mapoly0027s0042 Marchantia polymorpha HOM05D006256 ORTHO05D007833 5.0e-18 95.1 67 74.6
CAN.G1190.22 Capsicum annuum HOM05D006256 ORTHO05D007833 8.4e-18 94.4 98 61.2
Pp3c22_13420 Physcomitrium patens HOM05D006256 ORTHO05D007833 8.4e-18 94.4 110 51.8
SMO164G0197 Selaginella moellendorffii HOM05D006256 ORTHO05D007833 2.5e-17 92.8 87 57.5
Rhsim03G0259400 Rhododendron simsii HOM05D006256 ORTHO05D007833 1.2e-16 90.5 76 63.2
Pp3c21_8680 Physcomitrium patens HOM05D006256 ORTHO05D007833 5.3e-12 75.1 148 39.2
CSS0026373 Camellia sinensis var. sinensis HOM05D006256 ORTHO05D007833 3.4e-11 72.4 112 50.0
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 7.7e-11 71.2 87 52.9
SGA_v2.0_scaffold12G06024 Striga asiatica HOM05D006256 ORTHO05D007833 9.4e-09 64.3 77 50.6
Zm00001eb000270 Zea mays HOM05D006256 ORTHO05D007833 3.6e-08 62.4 48 77.1
Cfa020782 Carpinus fangiana HOM05D006256 ORTHO05D007833 4.6e-08 62.0 87 51.7
PRCOL_00001020 Prasinoderma coloniale HOM05D006256 ORTHO05D007833 1.8e-07 60.1 67 50.7
MCO09G536 Micromonas commoda HOM05D006256 ORTHO05D007833 6.7e-07 58.2 64 48.4
Sed0004136 Sechium edule HOM05D006256 ORTHO05D007833 1.1e-06 57.4 85 42.4


User provided reference genes

Program Settings