Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G152600 Theobroma cacao HOM05D006914 ORTHO05D008583 1.0e-51 206.5 104 100.0
COL.COLO4_23940 Corchorus olitorius HOM05D006914 ORTHO05D008583 1.4e-48 196.1 102 95.1
Gohir.D08G256600 Gossypium hirsutum HOM05D006914 ORTHO05D008583 1.8e-48 195.7 104 93.3
Gorai.004G273700 Gossypium raimondii HOM05D006914 ORTHO05D008583 1.8e-48 195.7 104 93.3
Duzib187G0910 Durio zibethinus HOM05D006914 ORTHO05D008583 1.2e-47 193.0 102 94.1
Ciclev10009995m.g Citrus clementina HOM05D006914 ORTHO05D008583 3.4e-47 191.4 104 89.4
Duzib150G1072 Durio zibethinus HOM05D006914 ORTHO05D008583 7.6e-47 190.3 102 93.1
Atru.chr7.325 Acer truncatum HOM05D006914 ORTHO05D008583 1.7e-46 189.1 104 88.5
MD15G1149500 Malus domestica HOM05D006914 ORTHO05D008583 4.9e-46 187.6 104 88.5
Prupe.7G265800 Prunus persica HOM05D006914 ORTHO05D008583 1.1e-45 186.4 104 88.5
GSVIVG01008452001 Vitis vinifera HOM05D006914 ORTHO05D008583 9.3e-45 183.3 105 89.5
FAN23G1758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 1.6e-44 182.6 104 85.6
Hma1.2p1_2085F.1_g313670 Hydrangea macrophylla HOM05D006914 ORTHO05D008583 2.1e-44 182.2 103 86.4
PGR102G2895 Punica granatum HOM05D006914 ORTHO05D008583 2.1e-44 182.2 104 83.7
CiPaw.15G165400 Carya illinoinensis HOM05D006914 ORTHO05D008583 2.7e-44 181.8 104 86.5
MD02G1005200 Malus domestica HOM05D006914 ORTHO05D008583 2.7e-44 181.8 104 85.6
Nn8g40004 Nelumbo nucifera HOM05D006914 ORTHO05D008583 2.7e-44 181.8 105 86.7
RcHm_v2.0_Chr2g0085261 Rosa chinensis HOM05D006914 ORTHO05D008583 2.7e-44 181.8 104 86.5
Dinv41349 Davidia involucrata HOM05D006914 ORTHO05D008583 4.6e-44 181.0 99 88.9
FAN26G2758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 7.9e-44 180.3 104 84.6
Hund04582 Selenicereus undatus HOM05D000185 ORTHO05D000105 7.9e-44 180.3 104 86.5
Potri.006G181400 Populus trichocarpa HOM05D006914 ORTHO05D008583 1.3e-43 179.5 104 85.6
Cfa020795 Carpinus fangiana HOM05D006914 ORTHO05D008583 1.7e-43 179.1 103 84.5
AUR62015440 Chenopodium quinoa HOM05D006914 ORTHO05D008583 2.3e-43 178.7 105 85.7
MELO3C004120.2 Cucumis melo HOM05D006914 ORTHO05D008583 3.0e-43 178.3 104 83.7
CSS0049762 Camellia sinensis var. sinensis HOM05D006914 ORTHO05D008583 3.9e-43 177.9 105 84.8
ClCG02G014340 Citrullus lanatus HOM05D006914 ORTHO05D008583 3.9e-43 177.9 104 83.7
TWI34G0278 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 3.9e-43 177.9 104 84.6
EL10Ac3g05865 Beta vulgaris HOM05D006914 ORTHO05D008583 5.1e-43 177.6 105 84.8
QL02p093962 Quercus lobata HOM05D006914 ORTHO05D008583 5.1e-43 177.6 102 85.3
Cpa.g.sc46.184 Carica papaya HOM05D006914 ORTHO05D008583 6.6e-43 177.2 104 88.5
TWI63G1652 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 8.7e-43 176.8 104 83.7
HanXRQChr03g0066101 Helianthus annuus HOM05D006914 ORTHO05D008583 1.1e-42 176.4 105 84.8
FvH4_1g00640 Fragaria vesca HOM05D006914 ORTHO05D008583 1.9e-42 175.6 104 82.7
ECA240G0809 Erigeron canadensis HOM05D006914 ORTHO05D008583 3.3e-42 174.9 103 85.4
Lsat_1_v5_gn_7_49520 Lactuca sativa HOM05D006914 ORTHO05D008583 3.3e-42 174.9 105 83.8
AUR62002229 Chenopodium quinoa HOM05D006914 ORTHO05D008583 7.3e-42 173.7 103 84.5
Nitab4.5_0001448g0020 Nicotiana tabacum HOM05D006914 ORTHO05D008583 7.3e-42 173.7 104 83.7
Sed0012601 Sechium edule HOM05D006914 ORTHO05D008583 7.3e-42 173.7 104 82.7
CANSAT56G0295 Cannabis sativa HOM05D006914 ORTHO05D008583 3.6e-41 171.4 102 81.4
Nitab4.5_0009003g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 6.2e-41 170.6 104 80.8
Sed0026010 Sechium edule HOM05D006914 ORTHO05D008583 6.2e-41 170.6 104 80.8
Glyma.04G155300 Glycine max HOM05D006914 ORTHO05D008583 1.4e-40 169.5 104 80.8
Nitab4.5_0000233g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 1.4e-40 169.5 100 84.0
TPR.G25932 Trifolium pratense HOM05D006914 ORTHO05D008583 3.1e-40 168.3 104 77.9
Ah.13g066550 Amaranthus hybridus HOM05D006914 ORTHO05D008583 2.0e-39 165.6 104 78.8
Lalb_Chr11g0072501 Lupinus albus HOM05D006914 ORTHO05D008583 2.0e-39 165.6 104 78.8
Glyma.06G225000 Glycine max HOM05D006914 ORTHO05D008583 2.6e-39 165.2 104 78.8
Aqoxy5G02159 Aquilegia oxysepala HOM05D006914 ORTHO05D008583 3.4e-39 164.9 103 79.6
Actinidia23563 Actinidia chinensis HOM05D006914 ORTHO05D008583 4.5e-39 164.5 95 85.3
Actinidia28379 Actinidia chinensis HOM05D006914 ORTHO05D008583 4.5e-39 164.5 95 88.4
TAR383G0505 Trochodendron aralioides HOM05D006914 ORTHO05D008583 9.9e-39 163.3 92 88.0
Phvul.007G242700 Phaseolus vulgaris HOM05D006914 ORTHO05D008583 1.3e-38 162.9 104 76.9
Manes.14G142700 Manihot esculenta HOM05D006914 ORTHO05D008583 2.9e-38 161.8 97 81.4
PSO111G0010 Papaver somniferum HOM05D006914 ORTHO05D008583 3.8e-38 161.4 99 78.8
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 1.1e-37 159.8 101 78.2
CsaV3_2G007660 Cucumis sativus L. HOM05D006914 ORTHO05D008583 1.4e-37 159.5 95 82.1
Ca_02367_v3 Cicer arietinum L. HOM05D006914 ORTHO05D008583 2.4e-37 158.7 99 78.8
Peaxi162Scf00156g01316 Petunia axillaris HOM05D006914 ORTHO05D008583 4.2e-37 157.9 102 79.4
VMungo0720G1978 Vigna mungo HOM05D006914 ORTHO05D008583 7.1e-37 157.1 102 75.5
Carub.0008s1839 Capsella rubella HOM05D006914 ORTHO05D008583 1.2e-36 156.4 92 84.8
AT5G57860 Arabidopsis thaliana HOM05D006914 ORTHO05D008583 2.7e-36 155.2 92 82.6
Sp6g19550 Schrenkiella parvula HOM05D006914 ORTHO05D008583 4.6e-36 154.5 92 82.6
Lj6g0027463 Lotus japonicus HOM05D006914 ORTHO05D008583 1.3e-35 152.9 104 70.2
CARHR271600 Cardamine hirsuta HOM05D006914 ORTHO05D008583 1.8e-35 152.5 92 82.6
Psat1g017920 Pisum sativum HOM05D006914 ORTHO05D008583 1.8e-35 152.5 104 75.0
AL8G33910 Arabidopsis lyrata HOM05D006914 ORTHO05D008583 2.3e-35 152.1 90 83.3
Medtr2g046160 Medicago truncatula HOM05D006914 ORTHO05D008583 2.3e-35 152.1 104 69.2
Migut.K00305 Erythranthe guttata HOM05D006914 ORTHO05D008583 3.9e-35 151.4 99 75.8
Thhalv10015128m.g Eutrema salsugineum HOM05D006914 ORTHO05D008583 5.1e-35 151.0 92 80.4
MSTRG.10711 Avicennia marina HOM05D006914 ORTHO05D008583 1.5e-34 149.4 103 73.8
Cc06_g14590 Coffea canephora HOM05D006914 ORTHO05D008583 1.9e-34 149.1 103 75.7
Sopen05g034470 Solanum pennellii HOM05D006914 ORTHO05D008583 7.4e-34 147.1 89 79.8
A03p12500 Brassica napus HOM05D006914 ORTHO05D008583 9.6e-34 146.7 92 78.3
C02p13800 Brassica napus HOM05D006914 ORTHO05D008583 2.8e-33 145.2 90 78.9
BolC2t07499H Brassica oleracea HOM05D006914 ORTHO05D008583 2.8e-33 145.2 90 78.9
A02p08150 Brassica napus HOM05D006914 ORTHO05D008583 3.7e-33 144.8 92 77.2
CDE05G0490 Ceratophyllum demersum HOM05D006914 ORTHO05D008583 3.7e-33 144.8 105 69.5
Oeu055276.1 Olea europaea HOM05D006914 ORTHO05D008583 3.7e-33 144.8 103 73.8
C09p49750 Brassica napus HOM05D006914 ORTHO05D008583 1.1e-32 143.3 92 76.1
BraA03t10565Z Brassica rapa HOM05D006914 ORTHO05D008583 1.1e-32 143.3 90 77.8
BolC3t13912H Brassica oleracea HOM05D006914 ORTHO05D008583 1.4e-32 142.9 90 77.8
ATR0763G197 Amborella trichopoda HOM05D006914 ORTHO05D008583 1.8e-32 142.5 100 70.0
Aa31LG3G13700 Aethionema arabicum HOM05D006914 ORTHO05D008583 4.0e-32 141.4 92 75.0
Oeu021334.1 Olea europaea HOM05D006914 ORTHO05D008583 4.0e-32 141.4 102 71.6
Os03g0364000 Oryza sativa ssp. japonica HOM05D006914 ORTHO05D008583 2.0e-31 139.0 94 75.5
TAR626G0439 Trochodendron aralioides HOM05D006914 ORTHO05D008583 3.4e-31 138.3 76 90.8
Rhsim03G0258700 Rhododendron simsii HOM05D000079 ORTHO05D000211 1.0e-30 136.7 76 89.5
HPP92_020604 Vanilla planifolia HOM05D006914 ORTHO05D008583 1.7e-30 136.0 91 74.7
Zm00001eb329210 Zea mays HOM05D006914 ORTHO05D008583 6.5e-30 134.0 93 69.9
unitig_748.g7196 Utricularia gibba HOM05D006914 ORTHO05D008583 8.4e-30 133.7 89 73.0
PSO782G4630 Papaver somniferum HOM05D006914 ORTHO05D008583 4.2e-29 131.3 99 66.7
Haze_19153 Corylus avellana HOM05D006914 ORTHO05D008583 5.5e-29 131.0 76 85.5
BcaB05g22379 Brassica carinata HOM05D006914 ORTHO05D008583 1.8e-27 125.9 90 73.3
Eucgr.C02509 Eucalyptus grandis HOM05D006914 ORTHO05D008583 1.8e-27 125.9 76 81.6
vmacro06059 Vaccinium macrocarpon HOM05D000079 ORTHO05D000211 5.1e-27 124.4 75 80.0
PGSC0003DMG400023462 Solanum tuberosum HOM05D006914 ORTHO05D008583 1.1e-26 123.2 76 78.9
Gohir.A08G236100 Gossypium hirsutum HOM05D006914 ORTHO05D008583 1.9e-26 122.5 64 93.8
BraA02t05889Z Brassica rapa HOM05D006914 ORTHO05D008583 2.5e-26 122.1 79 75.9
CAN.G694.81 Capsicum annuum HOM05D006914 ORTHO05D008583 5.7e-26 120.9 80 76.2
arahy.Tifrunner.gnm1.ann1.6E7PQ4 Arachis hypogaea HOM05D006914 ORTHO05D008583 1.8e-24 115.9 74 78.4
arahy.Tifrunner.gnm1.ann1.S2MTQV Arachis hypogaea HOM05D006914 ORTHO05D008583 5.3e-24 114.4 74 77.0
Pp3c19_17380 Physcomitrium patens HOM05D006914 ORTHO05D008583 1.2e-23 113.2 100 59.0
SGA_v2.0_scaffold222G42803 Striga asiatica HOM05D006914 ORTHO05D008583 1.5e-23 112.8 75 77.3
AagrBONN_evm.TU.Sc2ySwM_362.2477 Anthoceros agrestis HOM05D006914 ORTHO05D008583 7.6e-23 110.5 93 63.4
Mapoly0004s0198 Marchantia polymorpha HOM05D006914 ORTHO05D008583 8.4e-22 107.1 78 67.9
Sc13g0007320 Simmondsia chinensis HOM05D006914 ORTHO05D008583 1.6e-20 102.8 64 79.7
SMO304G0019 Selaginella moellendorffii HOM05D006914 ORTHO05D008583 6.1e-20 100.9 73 67.1
CBR_g51779 Chara braunii HOM05D006914 ORTHO05D008583 8.7e-19 97.1 96 54.2
Haze_19154 Corylus avellana HOM05D002983 ORTHO05D003451 9.7e-18 93.6 62 80.6
AagrBONN_evm.TU.Sc2ySwM_228.3148 Anthoceros agrestis HOM05D006914 ORTHO05D008583 1.4e-16 89.7 78 59.0
Pp3c17_5060 Physcomitrium patens HOM05D006914 ORTHO05D008583 2.4e-16 89.0 98 53.1
Aa31LG1G14450 Aethionema arabicum HOM05D006914 ORTHO05D008583 6.9e-16 87.4 75 60.0
Cre12.g554750 Chlamydomonas reinhardtii HOM05D006914 ORTHO05D008583 1.2e-15 86.7 86 51.2
BcaC04g19922 Brassica carinata HOM05D006914 ORTHO05D008583 1.1e-13 80.1 52 75.0
PRCOL_00002080 Prasinoderma coloniale HOM05D006914 ORTHO05D008583 3.2e-13 78.6 86 52.3
SHI02838 Sapria himalayana HOM05D006914 ORTHO05D008583 1.2e-12 76.6 87 48.3
C08p16940 Brassica napus HOM05D006914 ORTHO05D008583 5.3e-08 61.2 37 75.7
MCO12G243 Micromonas commoda HOM05D006914 ORTHO05D008583 1.0e-06 57.0 109 36.7
BraA10t43605Z Brassica rapa HOM05D006914 ORTHO05D008583 5.0e-06 54.7 30 86.7
arahy.Tifrunner.gnm1.ann1.1NQ5QU Arachis hypogaea HOM05D055138 ORTHO05D008583 6.5e-06 54.3 28 82.1


User provided reference genes

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