Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 5.1e-78 294.3 142 100.0
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 4.8e-52 208.0 144 65.3
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 3.4e-50 201.8 144 63.9
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 4.5e-50 201.4 144 65.3
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 1.0e-49 200.3 142 69.0
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 7.7e-42 174.1 108 77.8
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 6.7e-38 161.0 149 54.4
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 1.7e-36 156.4 150 52.0
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 2.8e-36 155.6 150 54.7
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 3.7e-36 155.2 148 56.8
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 8.2e-36 154.1 148 56.8
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 1.1e-35 153.7 149 50.3
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 1.8e-35 152.9 147 52.4
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 5.9e-34 147.9 149 49.7
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 3.2e-32 142.1 144 50.0
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 9.4e-32 140.6 145 49.7
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.2e-31 140.2 144 50.0
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 1.6e-31 139.8 145 51.7
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 2.1e-31 139.4 152 48.0
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 2.7e-31 139.0 147 52.4
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 6.1e-31 137.9 152 51.3
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 3.0e-30 135.6 144 47.2
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 4.0e-30 135.2 145 51.7
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 5.2e-30 134.8 150 52.0
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 1.5e-29 133.3 110 56.4
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 2.0e-29 132.9 147 46.3
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 5.7e-29 131.3 146 51.4
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 9.7e-29 130.6 146 47.3
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 1.3e-28 130.2 147 45.6
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 1.7e-28 129.8 147 49.0
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 4.8e-28 128.3 146 46.6
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 6.3e-28 127.9 146 46.6
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 6.3e-28 127.9 146 45.9
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 8.2e-28 127.5 158 46.2
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 8.2e-28 127.5 153 50.3
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 2.4e-27 125.9 161 48.4
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 4.1e-27 125.2 152 46.1
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 1.2e-26 123.6 149 45.6
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 2.0e-26 122.9 161 44.7
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 2.0e-26 122.9 156 43.6
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 4.5e-26 121.7 146 44.5
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 4.5e-26 121.7 152 45.4
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 3.8e-25 118.6 147 46.9
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 5.0e-25 118.2 146 46.6
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 1.9e-24 116.3 144 45.8
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 3.2e-24 115.5 162 39.5
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 5.5e-24 114.8 148 43.2
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 5.2e-22 108.2 149 41.6
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 1.2e-21 107.1 143 46.2
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 3.7e-20 102.1 154 38.3
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 4.8e-20 101.7 155 40.6
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 4.8e-20 101.7 165 40.6
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 4.8e-20 101.7 151 41.7
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 1.8e-19 99.8 153 39.9
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 1.8e-19 99.8 123 43.1
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 2.4e-19 99.4 154 40.9
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 4.1e-19 98.6 153 40.5
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 4.1e-19 98.6 146 39.7
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 2.0e-18 96.3 153 39.9
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 2.7e-18 95.9 154 41.6
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 3.5e-18 95.5 151 38.4
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 4.5e-18 95.1 152 40.1
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 4.5e-18 95.1 151 39.7
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 4.5e-18 95.1 151 39.7
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 1.0e-17 94.0 148 40.5
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 1.0e-17 94.0 149 39.6
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 2.9e-17 92.4 147 38.8
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 3.8e-17 92.0 145 41.4
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 3.8e-17 92.0 150 40.7
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 5.0e-17 91.7 134 35.8
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 6.5e-17 91.3 161 39.8
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 6.5e-17 91.3 77 58.4
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 8.6e-17 90.9 149 36.9
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 1.5e-16 90.1 154 33.8
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 1.5e-16 90.1 108 43.5
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 1.5e-16 90.1 160 39.4
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 2.5e-16 89.4 152 38.8
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 2.5e-16 89.4 152 38.8
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 2.5e-16 89.4 152 38.8
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 3.3e-16 89.0 116 45.7
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 7.2e-16 87.8 151 33.1
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 3.6e-15 85.5 166 38.0
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 3.6e-15 85.5 158 35.4
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 6.1e-15 84.7 149 37.6
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 8.0e-15 84.3 98 44.9
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 2.3e-14 82.8 97 43.3
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 2.3e-14 82.8 164 38.4
CANSAT11G0218 Cannabis sativa HOM05D007454 ORTHO05D009382 5.2e-14 81.6 158 33.5
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 8.9e-14 80.9 125 39.2
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 5.7e-13 78.2 164 32.3
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 5.7e-13 78.2 176 37.5
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 7.5e-13 77.8 114 37.7
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 4.9e-12 75.1 119 36.1
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 6.3e-12 74.7 163 33.1
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 8.3e-12 74.3 130 36.2
MBI01_g03566_MAGBIO Magnolia biondii HOM05D007454 ORTHO05D009382 1.1e-11 73.9 144 34.7
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 2.0e-10 69.7 133 32.3
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 3.5e-10 68.9 67 56.7
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 1.7e-09 66.6 36 77.8
CDE06G2168 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.9e-08 63.2 69 46.4
ATR0083G010 Amborella trichopoda HOM05D007454 ORTHO05D009382 4.3e-08 62.0 114 35.1
ATR0260G001 Amborella trichopoda HOM05D007454 ORTHO05D009382 4.3e-08 62.0 114 35.1
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 5.6e-08 61.6 153 35.9


User provided reference genes

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