Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 2.1e-106 389.0 198 100.0
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 1.2e-85 320.1 199 85.9
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 6.2e-82 307.8 198 82.3
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.3e-81 304.7 198 80.8
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.8e-79 298.5 198 79.3
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 1.1e-78 297.0 198 80.3
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.3e-65 251.5 197 72.1
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.5e-64 250.0 198 70.7
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.4e-64 248.8 198 71.2
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.8e-64 248.1 198 70.7
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.3e-63 246.9 198 70.7
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.9e-63 245.7 198 70.2
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.9e-63 245.7 198 70.2
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.9e-63 245.7 198 70.2
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.8e-63 245.4 198 70.7
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.1e-62 243.8 198 69.2
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 5.7e-59 231.5 198 67.7
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 3.1e-57 225.7 200 61.5
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.2e-56 223.8 144 77.1
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.4e-56 222.2 198 65.2
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 3.0e-52 209.1 206 56.8
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 5.1e-52 208.4 200 59.5
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 7.4e-51 204.5 194 61.9
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 5.3e-49 198.4 205 56.6
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 7.7e-48 194.5 234 52.6
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 7.7e-48 194.5 191 59.2
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 6.5e-47 191.4 195 59.5
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-46 190.7 198 59.1
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.9e-46 189.9 194 57.2
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 1.2e-45 187.2 191 57.1
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 3.6e-45 185.7 192 57.8
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.8e-44 183.3 192 56.8
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 3.3e-43 179.1 192 56.2
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 3.3e-43 179.1 192 56.2
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.7e-43 178.3 147 66.7
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.7e-43 178.3 147 66.7
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.1e-41 174.1 192 55.2
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 1.1e-41 174.1 192 52.6
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 5.9e-40 168.3 174 58.0
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 1.9e-38 163.3 188 51.1
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 4.2e-38 162.2 201 50.7
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 1.8e-36 156.8 204 50.5
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 3.9e-36 155.6 203 47.3
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 5.1e-36 155.2 202 48.0
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 4.4e-35 152.1 208 48.6
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 5.7e-35 151.8 205 48.8
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 7.4e-35 151.4 200 46.5
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 2.8e-34 149.4 172 53.5
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 6.3e-34 148.3 208 46.2
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.8e-33 146.7 202 47.5
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 2.4e-33 146.4 208 45.7
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 2.4e-33 146.4 223 45.7
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 4.1e-33 145.6 196 46.4
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 7.0e-33 144.8 193 46.1
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 9.1e-33 144.4 205 44.9
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 1.2e-32 144.1 150 56.7
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.2e-32 144.1 207 45.9
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 2.6e-32 142.9 196 45.9
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 5.9e-32 141.7 199 47.2
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 7.7e-32 141.4 203 46.3
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 5.0e-31 138.7 195 48.7
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 6.5e-31 138.3 194 45.4
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 8.5e-31 137.9 204 45.1
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 1.1e-30 137.5 192 48.4
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 1.9e-30 136.7 195 46.2
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 3.6e-29 132.5 194 44.8
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 8.0e-29 131.3 193 43.5
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 1.8e-28 130.2 198 45.5
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 1.8e-28 130.2 195 43.6
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 4.0e-28 129.0 189 43.4
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 4.0e-28 129.0 204 42.6
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 8.8e-28 127.9 200 45.5
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 1.5e-27 127.1 204 41.2
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 2.6e-27 126.3 195 44.1
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 2.6e-27 126.3 204 41.2
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 4.4e-27 125.6 193 41.5
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 7.5e-27 124.8 193 41.5
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 7.5e-27 124.8 208 43.8
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 9.7e-27 124.4 181 44.2
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 1.7e-26 123.6 172 43.0
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 1.7e-26 123.6 202 43.1
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 1.7e-26 123.6 186 43.0
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 4.8e-26 122.1 198 40.9
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 6.3e-26 121.7 192 41.1
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 6.3e-26 121.7 192 41.1
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 1.4e-25 120.6 233 38.6
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 1.8e-25 120.2 196 42.3
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 3.1e-25 119.4 199 43.7
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 4.1e-25 119.0 193 46.6
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 5.3e-25 118.6 196 42.9
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 9.1e-25 117.9 171 45.6
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 9.1e-25 117.9 205 44.4
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 1.2e-24 117.5 185 43.2
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 1.2e-24 117.5 186 44.6
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.6e-24 117.1 200 44.0
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.6e-24 117.1 200 44.0
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 3.5e-24 115.9 197 40.1
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 1.0e-23 114.4 152 48.7
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 6.5e-23 111.7 148 41.9
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 6.5e-23 111.7 207 44.0
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 1.1e-22 110.9 188 43.1
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 3.2e-22 109.4 202 40.6
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 5.5e-22 108.6 176 39.2
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 5.5e-22 108.6 197 42.1
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 3.6e-21 105.9 184 44.6
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 3.6e-21 105.9 197 40.1
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 4.7e-21 105.5 195 40.0
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.0e-20 104.4 198 36.9
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.0e-20 104.4 197 40.6
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 2.3e-20 103.2 198 40.4
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 2.3e-20 103.2 203 36.5
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 3.0e-20 102.8 172 43.0
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 8.8e-20 101.3 203 37.9
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 3.4e-19 99.4 180 39.4
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 7.5e-19 98.2 196 37.8
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 1.3e-18 97.4 185 39.5
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 1.3e-18 97.4 187 34.8
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 1.3e-18 97.4 185 39.5
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 1.3e-18 97.4 83 68.7
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 1.7e-18 97.1 189 37.0
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.2e-18 96.7 62 75.8
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.2e-18 96.7 62 75.8
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 3.7e-18 95.9 209 36.4
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 8.3e-18 94.7 194 38.7
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 8.3e-18 94.7 199 37.7
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 1.8e-17 93.6 194 40.2
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 5.4e-17 92.0 204 34.8
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 7.0e-17 91.7 190 35.8
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 7.0e-17 91.7 150 43.3
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 9.1e-17 91.3 180 36.7
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 9.1e-17 91.3 128 46.1
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 1.2e-16 90.9 195 35.9
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 1.6e-16 90.5 202 35.1
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 1.6e-16 90.5 202 35.1
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 2.7e-16 89.7 152 40.1
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 4.5e-16 89.0 92 56.5
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 5.9e-16 88.6 169 38.5
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 5.9e-16 88.6 146 43.8
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 1.0e-15 87.8 194 38.1
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 1.0e-15 87.8 206 37.9
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 1.7e-15 87.0 201 37.8
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 2.9e-15 86.3 148 40.5
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 3.8e-15 85.9 198 33.8
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 5.0e-15 85.5 200 35.0
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 5.0e-15 85.5 200 35.0
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 6.5e-15 85.1 190 35.8
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 6.5e-15 85.1 260 31.5
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.1e-14 84.3 198 34.3
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 4.2e-14 82.4 198 34.3
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 7.2e-14 81.6 194 37.6
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 7.2e-14 81.6 85 56.5
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 1.6e-13 80.5 195 35.9
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 2.1e-13 80.1 194 37.1
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 6.1e-13 78.6 194 37.1
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 6.1e-13 78.6 208 31.2
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 8.0e-13 78.2 174 32.2
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 1.8e-12 77.0 181 33.7
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 2.0e-11 73.6 167 32.9
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 5.7e-11 72.0 195 34.9
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 1.3e-10 70.9 144 31.9
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 1.3e-10 70.9 144 31.9
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 2.8e-10 69.7 107 39.3
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 2.8e-10 69.7 107 39.3
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 8.3e-10 68.2 203 34.0
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 3.1e-09 66.2 143 31.5
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 7.0e-09 65.1 144 30.6
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 9.2e-09 64.7 144 29.9
Actinidia15710 Actinidia chinensis HOM05D004036 ORTHO05D004576 1.0e-07 61.2 113 41.6
Lalb_Chr24g0393701 Lupinus albus HOM05D000001 ORTHO05D004044 3.3e-06 56.2 78 42.3
Psat0s3154g0080 Pisum sativum HOM05D000001 ORTHO05D004044 3.3e-06 56.2 131 34.4
Psat0s3154g0240 Pisum sativum HOM05D000001 ORTHO05D004044 3.3e-06 56.2 131 34.4
Psat0s3775g0160 Pisum sativum HOM05D000001 ORTHO05D004044 3.3e-06 56.2 131 34.4
ATR0037G046 Amborella trichopoda HOM05D004036 ORTHO05D004576 4.3e-06 55.8 211 27.5
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 7.3e-06 55.1 76 36.8
Ca_13092_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004044 9.5e-06 54.7 129 35.7


User provided reference genes

Program Settings