Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 3.6e-70 268.5 169 100.0
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 2.0e-44 183.0 173 73.4
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 1.3e-40 170.2 174 63.2
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 1.6e-38 163.3 199 63.3
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 4.4e-36 155.2 167 57.5
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.3e-35 153.7 167 56.9
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.7e-35 153.3 167 56.9
Gohir.D05G012200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.4e-21 107.1 170 43.5
Gorai.009G012500 Gossypium raimondii HOM05D003969 ORTHO05D003125 1.5e-20 103.6 170 42.9
Gohir.A05G011500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.4e-20 102.4 169 49.7
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 3.7e-19 99.0 158 41.8
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.1e-18 97.4 148 44.6
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 7.0e-18 94.7 173 42.2
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 2.1e-17 93.2 158 41.1
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.0e-16 90.9 159 38.4
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 2.3e-16 89.7 107 50.5
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.3e-16 89.7 172 40.7
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 3.0e-16 89.4 154 39.6
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 6.6e-16 88.2 162 40.7
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 8.6e-16 87.8 171 38.0
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 2.5e-15 86.3 157 38.2
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 5.6e-15 85.1 170 38.2
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 9.5e-15 84.3 152 39.5
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 9.5e-15 84.3 152 39.5
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 1.2e-14 84.0 155 33.5
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 2.1e-14 83.2 156 37.8
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 2.1e-14 83.2 158 38.6
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 2.1e-14 83.2 146 37.0
BcaC07g37678 Brassica carinata HOM05D003969 ORTHO05D003125 6.2e-14 81.6 155 34.2
BolC8t48050H Brassica oleracea HOM05D003969 ORTHO05D003125 6.2e-14 81.6 155 34.2
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 6.2e-14 81.6 98 45.9
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 3.1e-13 79.3 131 38.9
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 8.9e-13 77.8 154 39.0
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 1.5e-12 77.0 102 50.0
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 1.5e-12 77.0 182 34.6
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 2.6e-12 76.3 131 37.4
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.4e-12 75.9 150 40.7
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.4e-12 75.9 150 40.7
A08p09570 Brassica napus HOM05D003969 ORTHO05D003125 4.4e-12 75.5 105 41.0
BraA08t32954Z Brassica rapa HOM05D003969 ORTHO05D003125 4.4e-12 75.5 105 41.0
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 2.2e-11 73.2 152 36.2
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.9e-11 72.8 172 39.5
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 2.9e-11 72.8 108 44.4
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 6.4e-11 71.6 161 34.8
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 8.3e-11 71.2 162 35.8
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.9e-10 70.1 153 38.6
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 1.9e-10 70.1 94 47.9
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 1.9e-10 70.1 191 36.6
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 2.4e-10 69.7 148 37.2
QL02p091243 Quercus lobata HOM05D003969 ORTHO05D003125 2.4e-10 69.7 176 40.3
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 3.2e-10 69.3 157 35.7
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 4.1e-10 68.9 150 34.0
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 7.1e-10 68.2 165 37.0
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 1.2e-09 67.4 114 40.4
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 1.2e-09 67.4 60 61.7
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 1.6e-09 67.0 66 60.6
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 2.1e-09 66.6 92 50.0
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 2.1e-09 66.6 92 50.0
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 2.1e-09 66.6 124 40.3
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 2.1e-09 66.6 109 44.0
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 2.1e-09 66.6 179 33.5
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 3.5e-09 65.9 149 33.6
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 3.5e-09 65.9 162 34.0
Manes.14G138428 Manihot esculenta HOM05D003969 ORTHO05D003125 3.5e-09 65.9 144 37.5
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 3.5e-09 65.9 157 37.6
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 4.6e-09 65.5 165 37.0
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 4.6e-09 65.5 150 35.3
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 6.0e-09 65.1 96 41.7
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 6.0e-09 65.1 149 32.9
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 7.8e-09 64.7 88 44.3
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 7.8e-09 64.7 154 33.8
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 7.8e-09 64.7 170 32.4
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 7.8e-09 64.7 84 45.2
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.0e-08 64.3 53 56.6
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.0e-08 64.3 89 40.4
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.3e-08 63.9 151 49.0
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 1.3e-08 63.9 43 67.4
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 1.3e-08 63.9 84 45.2
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.3e-08 63.9 179 32.4
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 1.3e-08 63.9 166 34.3
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 1.3e-08 63.9 161 36.0
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 1.7e-08 63.5 43 67.4
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.7e-08 63.5 179 33.0
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.7e-08 63.5 94 44.7
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.3e-08 63.2 101 42.6
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 2.3e-08 63.2 156 34.6
Aqoxy7G03536 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 3.0e-08 62.8 168 36.9
AUR62012444 Chenopodium quinoa HOM05D003969 ORTHO05D003125 3.9e-08 62.4 53 54.7
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 3.9e-08 62.4 155 33.5
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 5.1e-08 62.0 84 45.2
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 6.6e-08 61.6 168 33.9
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 6.6e-08 61.6 82 46.3
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.6e-08 61.6 87 43.7
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 6.6e-08 61.6 81 44.4
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 8.6e-08 61.2 98 40.8
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 1.1e-07 60.8 43 65.1
PGR142G4289 Punica granatum HOM05D003969 ORTHO05D003125 1.1e-07 60.8 167 35.9
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 1.1e-07 60.8 92 42.4
Atru.chr7.265 Acer truncatum HOM05D003969 ORTHO05D003125 1.5e-07 60.5 154 33.8
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 1.5e-07 60.5 47 59.6
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 1.9e-07 60.1 114 37.7
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 1.9e-07 60.1 146 33.6
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 2.5e-07 59.7 92 42.4
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.3e-07 59.3 97 40.2
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 3.3e-07 59.3 152 32.9
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 4.3e-07 58.9 91 40.7
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.3e-07 58.9 84 42.9
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.3e-07 58.9 87 42.5
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.3e-07 58.9 84 42.9
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 4.3e-07 58.9 157 33.1
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 4.3e-07 58.9 156 30.8
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.6e-07 58.5 101 40.6
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 5.6e-07 58.5 153 32.0
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 5.6e-07 58.5 108 39.8
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 7.3e-07 58.2 105 39.0
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 7.3e-07 58.2 86 39.5
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 7.3e-07 58.2 62 50.0
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 9.5e-07 57.8 94 37.2
Eucgr.C01698 Eucalyptus grandis HOM05D003969 ORTHO05D003125 9.5e-07 57.8 87 42.5
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 9.5e-07 57.8 86 39.5
PSO384G4887 Papaver somniferum HOM05D000107 ORTHO05D000062 9.5e-07 57.8 56 53.6
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 9.5e-07 57.8 44 61.4
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 9.5e-07 57.8 176 30.1
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 1.2e-06 57.4 154 32.5
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.6e-06 57.0 98 39.8
Nitab4.5_0017863g0010 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.6e-06 57.0 57 54.4
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.6e-06 57.0 100 34.0
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 1.6e-06 57.0 46 58.7
HPP92_020075 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.6e-06 57.0 45 62.2
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 2.1e-06 56.6 64 56.2
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 2.1e-06 56.6 84 39.3
CDE02G0310 Ceratophyllum demersum HOM05D003969 ORTHO05D003125 2.8e-06 56.2 81 38.3
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 2.8e-06 56.2 159 38.4
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 2.8e-06 56.2 82 40.2
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.8e-06 56.2 40 62.5
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 2.8e-06 56.2 99 38.4
vmacro12402 Vaccinium macrocarpon HOM05D006851 ORTHO05D008844 2.8e-06 56.2 84 45.2
Eucgr.C01694 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.6e-06 55.8 86 41.9
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 3.6e-06 55.8 113 36.3
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 3.6e-06 55.8 84 40.5
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 3.6e-06 55.8 40 67.5
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 4.7e-06 55.5 49 55.1
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 4.7e-06 55.5 148 33.8
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 4.7e-06 55.5 151 32.5
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 4.7e-06 55.5 150 36.0
arahy.Tifrunner.gnm1.ann1.8XJ8NX Arachis hypogaea HOM05D013068 ORTHO05D003125 6.2e-06 55.1 49 67.3
arahy.Tifrunner.gnm1.ann1.H8K6JA Arachis hypogaea HOM05D013068 ORTHO05D003125 6.2e-06 55.1 49 67.3
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 6.2e-06 55.1 83 41.0
Phvul.001G047400 Phaseolus vulgaris HOM05D013068 ORTHO05D003125 6.2e-06 55.1 47 63.8
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 8.1e-06 54.7 142 32.4
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 8.1e-06 54.7 123 36.6


User provided reference genes

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