Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 8.1e-305 1049.7 553 100.0
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 1.8e-267 925.6 557 87.8
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 3.0e-259 898.3 551 86.4
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 1.4e-256 889.4 552 85.9
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 3.4e-255 884.8 551 85.5
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 1.3e-254 882.9 552 85.3
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 1.6e-220 769.6 567 73.7
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 6.1e-220 767.7 543 74.0
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 9.8e-218 760.4 554 74.0
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 8.9e-211 737.3 563 70.0
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 2.2e-209 732.6 552 72.5
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 3.7e-209 731.9 547 71.7
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 3.5e-207 725.3 561 68.6
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 7.8e-207 724.2 558 69.2
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 1.7e-206 723.0 553 74.5
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 7.3e-205 717.6 556 70.0
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 2.8e-204 715.7 568 69.2
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 3.6e-204 715.3 562 68.5
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 8.9e-203 710.7 564 66.3
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 1.5e-202 709.9 567 66.7
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 5.8e-202 708.0 556 68.5
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 7.8e-199 697.6 557 68.8
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 1.0e-198 697.2 554 68.1
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 1.3e-198 696.8 558 66.3
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 5.0e-198 694.9 548 67.2
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 8.6e-198 694.1 557 68.0
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 8.6e-198 694.1 551 66.6
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 9.5e-197 690.6 566 65.9
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 2.1e-196 689.5 554 67.5
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 3.6e-196 688.7 571 65.8
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 4.7e-196 688.3 570 66.0
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 1.4e-195 686.8 561 65.2
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.4e-195 686.8 573 66.3
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.1e-195 685.6 557 67.5
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 5.2e-195 684.9 557 65.5
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 6.8e-195 684.5 566 64.8
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 1.2e-194 683.7 552 64.5
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 9.8e-194 680.6 572 65.6
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 1.7e-193 679.9 570 64.0
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.9e-193 679.1 573 65.8
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 3.7e-193 678.7 566 64.8
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 8.3e-193 677.6 573 65.4
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 1.1e-192 677.2 566 64.7
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 1.2e-191 673.7 550 62.5
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 2.1e-191 672.9 555 65.2
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 1.0e-190 670.6 555 64.9
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 1.0e-190 670.6 555 64.3
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 2.3e-190 669.5 558 63.3
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 1.1e-189 667.2 558 63.8
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 1.8e-187 659.8 662 55.7
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 5.2e-187 658.3 552 63.9
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 1.2e-186 657.1 561 62.2
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 1.5e-186 656.8 566 63.4
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 1.7e-185 653.3 556 63.8
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.7e-185 653.3 553 63.1
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 4.9e-185 651.7 560 63.2
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 6.4e-185 651.4 561 63.6
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 8.3e-185 651.0 562 61.2
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 7.8e-183 644.4 552 63.0
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.7e-182 643.3 561 62.9
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 2.3e-182 642.9 560 61.6
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 5.6e-181 638.3 548 62.0
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 1.2e-180 637.1 555 63.8
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 4.7e-180 635.2 560 62.1
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 1.4e-179 633.6 553 64.0
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 4.0e-179 632.1 553 61.5
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 3.4e-178 629.0 563 62.0
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 4.4e-178 628.6 551 60.8
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 7.6e-178 627.9 574 59.2
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 1.7e-177 626.7 566 62.4
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.2e-177 626.3 563 61.8
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 3.8e-177 625.5 552 60.3
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 1.4e-176 623.6 586 60.2
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 1.9e-176 623.2 554 61.9
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 3.2e-176 622.5 586 60.4
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 3.2e-176 622.5 554 63.2
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 6.0e-175 618.2 570 59.5
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 1.0e-174 617.5 577 59.3
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 1.3e-172 610.5 586 58.9
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 1.6e-172 610.1 566 58.1
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 3.6e-172 609.0 556 59.7
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 3.1e-171 605.9 569 59.2
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 3.1e-171 605.9 546 59.5
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 6.9e-171 604.7 547 58.5
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 9.9e-170 600.9 555 58.7
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 1.7e-169 600.1 578 59.0
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 1.9e-168 596.7 562 60.1
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 1.9e-168 596.7 578 57.8
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 2.4e-168 596.3 562 60.1
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 7.1e-168 594.7 565 59.3
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 7.1e-168 594.7 560 58.2
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 2.7e-167 592.8 550 58.2
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 2.7e-167 592.8 547 58.0
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 3.5e-167 592.4 573 57.9
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 1.0e-166 590.9 569 58.7
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 1.0e-166 590.9 554 58.5
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 1.2e-162 577.4 571 57.1
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 2.9e-161 572.8 554 57.2
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 8.4e-161 571.2 568 56.5
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 2.1e-151 540.0 577 54.6
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 2.1e-148 530.0 468 60.0
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.1e-147 527.7 416 68.0
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 7.6e-146 521.5 537 52.9
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 1.6e-143 513.8 416 68.0
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 1.1e-141 507.7 281 92.2
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 9.0e-139 498.0 434 62.9
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 2.0e-138 496.9 554 52.9
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.5e-136 488.8 500 57.6
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.1e-135 486.9 527 54.6
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 2.0e-133 480.3 553 49.0
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.3e-125 453.0 301 76.7
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 3.7e-124 449.5 562 47.2
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.0e-118 431.4 370 62.2
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 4.4e-117 426.0 549 44.3
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 5.0e-113 412.5 553 45.6
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 4.4e-109 399.4 553 42.3
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 3.8e-105 386.3 386 58.0
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 2.8e-100 370.2 557 40.2
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 7.5e-93 345.5 309 61.8
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 7.8e-90 335.5 462 46.1
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 2.8e-87 327.0 528 42.4
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 3.5e-82 310.1 584 40.1
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 1.4e-78 298.1 336 52.1
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.6e-69 267.3 174 77.6
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.9e-68 263.1 253 60.5
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 8.4e-68 262.3 225 62.2
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-65 255.0 489 39.3
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 2.2e-60 237.7 158 72.8
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 2.9e-60 237.3 412 37.1
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.3e-49 201.1 141 73.8
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-46 192.2 138 68.8
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 1.9e-43 181.4 138 68.8
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-42 177.2 310 39.4
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-39 168.7 118 71.2
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 1.4e-38 165.2 142 57.7
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 1.4e-38 165.2 118 69.5
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 1.1e-30 139.0 112 64.3
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 4.6e-26 123.6 284 36.3
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 8.2e-23 112.8 172 40.1
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-22 112.5 86 66.3
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 6.9e-22 109.8 103 54.4
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 1.2e-21 109.0 90 64.4
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 3.3e-16 90.9 56 67.9
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 1.2e-13 82.4 67 62.7
Thecc.08G193600 Theobroma cacao HOM05D004469 ORTHO05D005429 1.3e-12 79.0 50 78.0
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 5.0e-12 77.0 165 40.0
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 9.4e-11 72.8 43 74.4
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 2.7e-10 71.2 48 75.0
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 7.9e-10 69.7 51 70.6
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.0e-09 67.8 73 50.7
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 1.1e-08 65.9 183 36.6
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-08 65.9 164 35.4
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 4.4e-08 63.9 165 37.0
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 3.7e-07 60.8 52 61.5
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 3.1e-06 57.8 36 72.2
HanXRQChr01g0025721 Helianthus annuus HOM05D004469 ORTHO05D005429 9.1e-06 56.2 43 60.5


User provided reference genes

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