Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 1.1e-167 593.2 291 100.0
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 2.0e-153 545.8 291 91.4
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.6e-147 526.2 292 89.7
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.1e-146 523.5 290 88.3
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.1e-146 523.5 290 88.3
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 9.0e-146 520.4 290 87.6
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 5.8e-145 517.7 292 88.7
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 2.4e-135 485.7 297 80.1
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 2.5e-132 475.7 293 79.2
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 5.6e-132 474.6 282 81.9
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 6.2e-131 471.1 244 93.9
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 2.4e-130 469.2 297 77.4
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 3.1e-130 468.8 293 78.2
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 9.0e-130 467.2 296 76.4
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.5e-129 466.5 292 82.5
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 4.5e-129 464.9 297 75.4
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 7.6e-129 464.2 292 75.7
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 9.9e-129 463.8 292 77.7
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 1.3e-128 463.4 278 79.1
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.9e-128 462.2 297 78.1
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 3.8e-128 461.8 297 78.1
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 4.2e-127 458.4 295 76.9
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 5.5e-127 458.0 273 79.1
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 1.2e-126 456.8 294 74.8
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 3.5e-126 455.3 284 78.5
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 1.3e-125 453.4 287 77.0
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 3.0e-125 452.2 284 76.4
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 3.0e-125 452.2 295 74.9
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 6.7e-125 451.1 283 76.3
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 8.7e-125 450.7 281 77.2
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 8.7e-125 450.7 281 77.2
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 5.6e-124 448.0 295 75.3
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 1.3e-123 446.8 295 75.3
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 1.6e-123 446.4 280 76.8
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.1e-123 446.0 265 80.8
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 6.2e-123 444.5 280 75.7
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 8.2e-123 444.1 282 75.9
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 1.1e-122 443.7 273 78.4
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.4e-122 443.4 296 73.6
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.8e-122 443.0 271 80.1
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 2.4e-122 442.6 287 73.9
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 1.5e-121 439.9 266 77.8
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 2.0e-121 439.5 296 72.0
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 5.8e-121 438.0 299 70.9
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.7e-120 436.4 292 74.3
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 1.7e-120 436.4 297 72.4
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 2.2e-120 436.0 264 78.0
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 3.8e-120 435.3 295 73.2
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 4.9e-120 434.9 282 74.8
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 1.4e-119 433.3 293 72.7
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 2.5e-119 432.6 292 72.6
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 4.2e-119 431.8 289 74.0
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 2.1e-118 429.5 294 70.1
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 2.1e-118 429.5 279 73.8
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 6.0e-118 427.9 291 72.9
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 6.0e-118 427.9 273 75.1
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 1.0e-117 427.2 290 70.3
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 1.0e-117 427.2 296 72.0
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.0e-117 427.2 285 74.4
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 3.9e-117 425.2 291 72.2
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 3.9e-117 425.2 288 71.9
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 8.7e-117 424.1 291 71.8
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.1e-116 423.7 229 89.5
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 3.3e-116 422.2 294 69.4
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 3.3e-116 422.2 292 71.2
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 4.3e-116 421.8 290 69.7
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 7.4e-116 421.0 266 76.7
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 2.2e-115 419.5 266 76.7
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 2.8e-115 419.1 296 67.9
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 3.7e-115 418.7 292 68.8
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 4.8e-115 418.3 289 70.2
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 4.8e-115 418.3 292 68.8
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 2.4e-114 416.0 286 72.4
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 4.1e-114 415.2 274 74.8
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 1.5e-113 413.3 290 68.3
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 5.9e-113 411.4 288 69.4
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 7.7e-113 411.0 297 67.3
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 5.0e-112 408.3 264 73.9
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 5.5e-111 404.8 238 85.7
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 1.6e-110 403.3 231 83.5
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 1.4e-109 400.2 243 81.5
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 4.3e-108 395.2 292 65.8
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 4.8e-107 391.7 274 69.0
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 1.4e-103 380.2 384 52.3
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 5.5e-103 378.3 292 67.1
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.8e-101 373.2 285 61.8
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 3.0e-101 372.5 289 66.1
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 1.1e-100 370.5 277 65.0
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 4.4e-100 368.6 239 77.0
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 2.2e-99 366.3 248 70.6
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 6.3e-99 364.8 267 64.4
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 9.1e-98 360.9 290 62.4
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 1.5e-97 360.1 266 62.0
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 5.5e-95 351.7 216 76.4
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 3.0e-93 345.9 285 60.7
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 5.2e-93 345.1 227 72.7
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 1.5e-92 343.6 273 59.0
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 4.4e-92 342.0 269 60.6
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 2.8e-91 339.3 274 59.1
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 2.8e-91 339.3 274 59.1
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 2.8e-91 339.3 274 59.1
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 6.3e-91 338.2 274 59.1
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 1.4e-90 337.0 273 60.1
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 1.8e-90 336.7 271 59.4
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 2.4e-90 336.3 271 59.8
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 7.7e-89 331.3 272 61.0
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 1.7e-88 330.1 271 59.0
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 1.9e-87 326.6 244 65.2
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 3.2e-87 325.9 262 59.9
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 3.6e-86 322.4 262 59.5
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.0e-85 320.9 192 76.6
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.8e-85 320.1 217 72.4
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 7.0e-82 308.1 278 55.0
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 1.2e-76 290.8 259 59.8
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 2.0e-76 290.0 263 55.9
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 9.1e-74 281.2 230 60.0
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 2.5e-71 273.1 216 59.7
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 8.0e-70 268.1 287 51.6
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 2.3e-64 250.0 284 50.0
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 3.9e-64 249.2 226 55.3
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 2.0e-60 236.9 232 53.0
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 1.5e-55 220.7 137 74.5
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 4.3e-55 219.2 223 49.8
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 8.9e-53 211.5 202 58.9
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 2.3e-45 186.8 141 64.5
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 1.0e-40 171.4 270 37.8
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 4.4e-36 156.0 128 58.6
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 4.2e-34 149.4 97 79.4
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 1.3e-27 127.9 212 34.0
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 3.6e-22 109.8 79 65.8
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 4.5e-20 102.8 158 36.7
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 7.6e-20 102.1 106 52.8
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 9.9e-20 101.7 160 36.9
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 1.1e-18 98.2 54 79.6
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 3.9e-16 89.7 49 87.8
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 5.1e-16 89.4 73 56.2
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 1.1e-13 81.6 43 81.4
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 2.3e-08 63.9 40 65.0
CARHR217150 Cardamine hirsuta HOM05D005541 ORTHO05D006875 3.9e-08 63.2 54 51.9
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 6.2e-06 55.8 241 27.0


User provided reference genes

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