Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G136000 Theobroma cacao HOM05D007440 ORTHO05D009418 2.2e-57 225.3 108 100.0
Thecc.08G172800 Theobroma cacao HOM05D007440 ORTHO05D009418 1.8e-46 189.1 97 94.8
Duzib177G0102 Durio zibethinus HOM05D007440 ORTHO05D009418 4.3e-45 184.5 97 90.7
COL.COLO4_24615 Corchorus olitorius HOM05D007440 ORTHO05D009418 1.2e-42 176.4 97 87.6
CiPaw.03G017000 Carya illinoinensis HOM05D007440 ORTHO05D009418 1.9e-40 169.1 96 84.4
FvH4_5g32910 Fragaria vesca HOM05D007440 ORTHO05D009418 2.7e-39 165.2 97 81.4
FAN18G0056 Fragaria x ananassa HOM05D007440 ORTHO05D009418 2.7e-39 165.2 97 81.4
RcHm_v2.0_Chr7g0224381 Rosa chinensis HOM05D007440 ORTHO05D009418 3.9e-38 161.4 97 79.4
GSVIVG01036437001 Vitis vinifera HOM05D007440 ORTHO05D009418 1.5e-37 159.5 97 78.4
TAR381G0685 Trochodendron aralioides HOM05D007440 ORTHO05D009418 1.9e-37 159.1 97 76.3
Dinv41796 Davidia involucrata HOM05D007440 ORTHO05D009418 2.5e-37 158.7 96 79.2
FAN04G2515 Fragaria x ananassa HOM05D007440 ORTHO05D009418 2.5e-37 158.7 97 77.3
MD15G1399400 Malus domestica HOM05D007440 ORTHO05D009418 7.4e-37 157.1 97 80.4
Haze_13927 Corylus avellana HOM05D007440 ORTHO05D009418 1.6e-36 156.0 96 79.2
Gorai.009G265700 Gossypium raimondii HOM05D007440 ORTHO05D009418 1.6e-36 156.0 97 81.4
TWI23G1187 Tripterygium wilfordii HOM05D007440 ORTHO05D009418 1.6e-36 156.0 96 81.2
Prupe.1G546900 Prunus persica HOM05D007440 ORTHO05D009418 2.2e-36 155.6 97 79.4
Cfa008111 Carpinus fangiana HOM05D007440 ORTHO05D009418 2.8e-36 155.2 96 79.2
Gohir.D05G254100 Gossypium hirsutum HOM05D007440 ORTHO05D009418 3.7e-36 154.8 97 80.4
Nn1g02997 Nelumbo nucifera HOM05D007440 ORTHO05D009418 8.2e-36 153.7 97 76.3
PGR031G3126 Punica granatum HOM05D007440 ORTHO05D009418 8.2e-36 153.7 96 81.2
Gohir.A05G252301 Gossypium hirsutum HOM05D007440 ORTHO05D009418 1.1e-35 153.3 97 79.4
ClCG11G008830 Citrullus lanatus HOM05D007440 ORTHO05D009418 1.4e-35 152.9 97 77.3
Ciclev10024582m.g Citrus clementina HOM05D007440 ORTHO05D009418 1.4e-35 152.9 96 78.1
Hma1.2p1_0708F.1_g207100 Hydrangea macrophylla HOM05D007440 ORTHO05D009418 2.4e-35 152.1 96 75.0
QL09p004054 Quercus lobata HOM05D007440 ORTHO05D009418 2.4e-35 152.1 96 79.2
Lj9C701T14 Lonicera japonica HOM05D007440 ORTHO05D009418 5.3e-35 151.0 99 77.8
MELO3C008079.2 Cucumis melo HOM05D007440 ORTHO05D009418 6.9e-35 150.6 96 77.1
CsaV3_2G033090 Cucumis sativus L. HOM05D007440 ORTHO05D009418 6.9e-35 150.6 96 78.1
Manes.18G121350 Manihot esculenta HOM05D007440 ORTHO05D009418 1.5e-34 149.4 97 76.3
Thecc.02G308000 Theobroma cacao HOM05D007440 ORTHO05D009418 3.4e-34 148.3 76 94.7
Cpa.g.sc21.56 Carica papaya HOM05D007440 ORTHO05D009418 4.5e-34 147.9 96 76.0
PSO170G3813 Papaver somniferum HOM05D007440 ORTHO05D009418 5.9e-34 147.5 98 75.5
PGSC0003DMG401002240 Solanum tuberosum HOM05D007440 ORTHO05D009418 7.6e-34 147.1 97 72.2
Actinidia29398 Actinidia chinensis HOM05D007440 ORTHO05D009418 1.7e-33 146.0 97 75.3
Solyc12g017690.3 Solanum lycopersicum HOM05D007440 ORTHO05D009418 1.7e-33 146.0 98 73.5
PSO782G5381 Papaver somniferum HOM05D007440 ORTHO05D009418 2.2e-33 145.6 98 74.5
Sopen12g008470 Solanum pennellii HOM05D007440 ORTHO05D009418 3.8e-33 144.8 98 72.4
Oeu061891.1 Olea europaea HOM05D007440 ORTHO05D009418 5.0e-33 144.4 97 72.2
Sed0012539 Sechium edule HOM05D007440 ORTHO05D009418 5.0e-33 144.4 96 74.0
Nitab4.5_0000219g0040 Nicotiana tabacum HOM05D007440 ORTHO05D009418 6.5e-33 144.1 97 71.1
Cc03_g16220 Coffea canephora HOM05D007440 ORTHO05D009418 4.2e-32 141.4 99 73.7
arahy.Tifrunner.gnm1.ann1.E07HZ8 Arachis hypogaea HOM05D007440 ORTHO05D009418 5.5e-32 141.0 98 73.5
arahy.Tifrunner.gnm1.ann1.YQ4984 Arachis hypogaea HOM05D007440 ORTHO05D009418 5.5e-32 141.0 98 73.5
Atru.chr12.1704 Acer truncatum HOM05D007440 ORTHO05D009418 7.2e-32 140.6 96 74.0
CSS0010463 Camellia sinensis var. sinensis HOM05D007440 ORTHO05D009418 1.2e-31 139.8 100 68.0
CSS0017361 Camellia sinensis var. sinensis HOM05D007440 ORTHO05D009418 1.2e-31 139.8 100 68.0
CANSAT25G0816 Cannabis sativa HOM05D007440 ORTHO05D009418 1.6e-31 139.4 96 70.8
vmacro11039 Vaccinium macrocarpon HOM05D007440 ORTHO05D009418 2.1e-31 139.0 108 67.6
CDE05G2917 Ceratophyllum demersum HOM05D007440 ORTHO05D009418 3.6e-31 138.3 98 70.4
Glyma.13G000800 Glycine max HOM05D007440 ORTHO05D009418 3.6e-31 138.3 98 71.4
Potri.019G076200 Populus trichocarpa HOM05D007440 ORTHO05D009418 6.1e-31 137.5 100 70.0
Sabra19G0086600 Salix brachista HOM05D007440 ORTHO05D009418 6.1e-31 137.5 99 72.7
Atru.chr13.2417 Acer truncatum HOM05D007440 ORTHO05D009418 8.8e-30 133.7 96 72.9
SalBow6G1672 Salvia bowleyana HOM05D007440 ORTHO05D009418 8.8e-30 133.7 97 67.0
Aa31LG4G9050 Aethionema arabicum HOM05D007440 ORTHO05D009418 2.5e-29 132.1 97 67.0
Phvul.011G216600 Phaseolus vulgaris HOM05D007440 ORTHO05D009418 3.3e-29 131.7 97 67.0
Lj3g0019924 Lotus japonicus HOM05D007440 ORTHO05D009418 4.3e-29 131.3 97 72.2
Lsat_1_v5_gn_1_25281 Lactuca sativa HOM05D007440 ORTHO05D009418 1.3e-28 129.8 110 63.6
MBI03_g14514_MAGBIO Magnolia biondii HOM05D007440 ORTHO05D009418 1.7e-28 129.4 122 59.8
Rhsim02G0174300 Rhododendron simsii HOM05D007440 ORTHO05D009418 3.7e-28 128.3 108 66.7
THA.LOC104810378 Tarenaya hassleriana HOM05D007440 ORTHO05D009418 6.3e-28 127.5 96 62.5
Migut.N03008 Erythranthe guttata HOM05D007440 ORTHO05D009418 5.3e-27 124.4 97 63.9
HanXRQChr02g0037061 Helianthus annuus HOM05D007440 ORTHO05D009418 1.3e-25 119.8 102 62.7
Hund26630 Selenicereus undatus HOM05D007440 ORTHO05D009418 2.9e-25 118.6 99 65.7
Medtr4g031180 Medicago truncatula HOM05D007440 ORTHO05D009418 1.4e-24 116.3 93 65.6
Psat7g227720 Pisum sativum HOM05D007440 ORTHO05D009418 1.4e-24 116.3 91 67.0
Aqoxy6G00075 Aquilegia oxysepala HOM05D007440 ORTHO05D009418 3.2e-24 115.2 115 58.3
TPR.G34135 Trifolium pratense HOM05D007440 ORTHO05D009418 5.5e-24 114.4 91 67.0
HPP92_004660 Vanilla planifolia HOM05D007440 ORTHO05D009418 2.6e-21 105.5 96 59.4
Os10g0141900 Oryza sativa ssp. japonica HOM05D007440 ORTHO05D009418 6.9e-19 97.4 100 55.0
SGA_v2.0_scaffold19G08914 Striga asiatica HOM05D007440 ORTHO05D009418 6.9e-19 97.4 151 43.0
ATR1089G110 Amborella trichopoda HOM05D007440 ORTHO05D009418 1.2e-18 96.7 97 57.7
Pp3c17_10270 Physcomitrium patens HOM05D007440 ORTHO05D009418 1.1e-13 80.1 96 46.9
Lalb_Chr17g0336871 Lupinus albus HOM05D007440 ORTHO05D009418 2.0e-13 79.3 106 50.9
SMO347G0497 Selaginella moellendorffii HOM05D007440 ORTHO05D009418 2.6e-13 79.0 79 49.4
Mapoly0046s0064 Marchantia polymorpha HOM05D007440 ORTHO05D009418 2.4e-11 72.4 96 43.8
Ca_12759_v3 Cicer arietinum L. HOM05D007440 ORTHO05D009418 4.1e-11 71.6 82 53.7
Pp3c9_24070 Physcomitrium patens HOM05D007440 ORTHO05D009418 5.9e-10 67.8 96 42.7
CBR_g29696 Chara braunii HOM05D007440 ORTHO05D009418 1.0e-09 67.0 100 38.0


User provided reference genes

Program Settings