Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 0.0e+00 1556.6 782 100.0
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 0.0e+00 1299.3 730 88.6
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 0.0e+00 1295.4 730 89.6
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 0.0e+00 1286.6 730 88.1
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 0.0e+00 1222.6 687 88.6
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 0.0e+00 1208.4 736 84.5
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 0.0e+00 1198.7 730 80.8
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 0.0e+00 1194.5 724 80.1
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 0.0e+00 1192.2 724 80.9
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 0.0e+00 1176.4 730 79.6
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 0.0e+00 1162.1 722 79.1
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1149.8 711 79.5
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 0.0e+00 1148.3 723 77.7
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 0.0e+00 1141.3 738 75.2
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 0.0e+00 1133.2 744 76.5
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 0.0e+00 1130.2 725 76.1
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1129.4 729 77.2
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 0.0e+00 1127.9 729 77.1
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 0.0e+00 1125.2 726 75.6
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 0.0e+00 1124.0 731 76.5
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 0.0e+00 1112.4 714 75.6
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 0.0e+00 1111.3 730 75.8
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 0.0e+00 1109.7 730 76.3
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1109.7 725 74.5
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 0.0e+00 1107.0 712 77.1
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1105.9 737 73.4
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1105.1 722 74.5
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 0.0e+00 1104.4 725 74.2
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 0.0e+00 1091.6 723 74.3
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 0.0e+00 1089.3 751 73.2
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 0.0e+00 1087.4 734 72.6
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 0.0e+00 1083.9 714 74.8
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 0.0e+00 1083.6 728 74.0
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 0.0e+00 1080.5 729 73.9
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 0.0e+00 1078.2 714 74.8
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 0.0e+00 1076.2 724 73.5
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 0.0e+00 1075.8 717 72.7
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 9.0e-310 1066.6 731 71.7
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 9.0e-310 1066.6 718 73.5
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 2.5e-307 1058.5 730 71.9
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 9.3e-307 1056.6 730 71.8
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 3.5e-306 1054.7 714 72.3
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 6.7e-305 1050.4 706 72.8
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 1.1e-304 1049.7 714 72.0
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 1.9e-304 1048.9 725 71.6
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 2.5e-304 1048.5 715 72.3
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 2.5e-304 1048.5 715 72.3
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 9.7e-304 1046.6 723 71.2
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 2.0e-301 1038.9 712 73.5
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 2.6e-301 1038.5 713 71.0
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 1.7e-300 1035.8 783 67.2
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 2.9e-300 1035.0 703 71.4
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 1.4e-299 1032.7 703 71.1
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 4.6e-298 1027.7 709 70.5
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 6.1e-298 1027.3 732 68.9
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 3.0e-297 1025.0 715 69.5
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 8.8e-297 1023.5 735 69.4
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 1.9e-296 1022.3 711 70.5
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.9e-296 1022.3 689 72.6
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 3.1e-294 1015.0 712 70.2
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 5.9e-293 1010.7 711 70.6
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 7.7e-293 1010.4 723 69.8
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 2.7e-290 1001.9 709 70.0
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 3.9e-289 998.0 721 67.7
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 4.4e-288 994.6 711 69.1
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 3.2e-283 978.4 694 70.3
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 5.7e-280 967.6 598 79.8
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 2.8e-279 965.3 710 68.6
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 2.4e-278 962.2 724 66.4
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 4.5e-277 958.0 843 59.0
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 4.0e-273 944.9 725 65.8
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 1.5e-272 943.0 725 66.3
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 5.3e-270 934.5 554 81.9
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 9.1e-270 933.7 717 66.2
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 2.9e-268 928.7 713 65.9
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 3.8e-268 928.3 725 65.1
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 3.8e-268 928.3 725 65.1
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 5.0e-268 927.9 711 65.3
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 3.2e-267 925.2 730 64.8
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 7.2e-267 924.1 725 64.6
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 6.1e-266 921.0 729 64.2
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 1.4e-265 919.8 752 63.8
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 8.3e-263 910.6 733 63.0
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 2.9e-260 902.1 710 66.2
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 8.6e-260 900.6 615 71.5
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 6.8e-257 891.0 722 63.7
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 1.8e-249 866.3 631 69.1
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 2.7e-245 852.4 661 65.2
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 2.5e-243 845.9 749 59.7
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 4.4e-224 781.9 609 65.0
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 6.6e-220 768.1 473 79.7
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 1.1e-214 750.7 622 59.8
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 4.3e-211 738.8 733 53.9
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 1.9e-198 696.8 465 74.8
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 4.5e-192 675.6 475 69.5
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 2.8e-186 656.4 466 69.1
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 3.1e-185 652.9 467 66.4
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 4.3e-179 632.5 448 67.2
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 1.5e-176 624.0 762 44.9
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 6.5e-175 618.6 738 46.6
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 1.2e-168 597.8 453 69.1
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 3.8e-167 592.8 480 62.7
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 2.9e-159 566.6 390 72.1
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 8.5e-159 565.1 381 74.5
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 1.2e-155 554.7 429 63.6
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 3.5e-152 543.1 693 44.9
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 9.8e-139 498.4 421 62.0
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 4.1e-137 493.0 689 42.4
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 5.4e-129 466.1 308 74.7
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 2.8e-125 453.8 755 38.1
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 2.8e-125 453.8 739 38.7
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 2.7e-120 437.2 327 66.4
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 2.2e-114 417.5 383 59.3
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 3.5e-112 410.2 293 70.6
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 2.2e-90 337.8 193 84.5
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 6.2e-77 293.1 195 70.8
vmacro06156 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 5.3e-76 290.0 245 62.0
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 7.4e-54 216.5 315 44.4
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 6.3e-45 186.8 142 70.4
unitig_0.g2716 Utricularia gibba HOM05D005191 ORTHO05D006725 1.2e-43 182.6 150 60.7
CDE05G1976 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 2.0e-43 181.8 156 57.1
Actinidia38722 Actinidia chinensis HOM05D005191 ORTHO05D006725 1.6e-40 172.2 162 57.4
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 2.6e-38 164.9 115 68.7
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.7e-37 162.2 109 72.5
FAN10G4062 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.4e-31 142.5 126 63.5
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 5.2e-31 140.6 124 57.3
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 1.5e-30 139.0 801 23.6
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 2.6e-30 138.3 520 26.9
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.6e-27 129.0 267 34.8
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 6.6e-26 123.6 141 48.2
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 1.3e-21 109.4 74 71.6
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.2e-21 108.6 82 68.3
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.6e-19 102.4 84 64.3
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 3.5e-19 101.3 64 71.9
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 7.8e-19 100.1 115 56.5
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.9e-17 95.5 61 78.7
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 6.2e-16 90.5 56 82.1
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 9.8e-14 83.2 53 75.5
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 1.4e-12 79.3 51 72.5
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 7.0e-12 77.0 60 60.0
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 7.0e-12 77.0 67 56.7
COL.COLO4_37048 Corchorus olitorius HOM05D005191 ORTHO05D006725 1.2e-08 66.2 40 80.0
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 2.1e-08 65.5 110 37.3
COL.COLO4_06980 Corchorus olitorius HOM05D005191 ORTHO05D006725 1.8e-07 62.4 37 83.8
FAN06G4723 Fragaria x ananassa HOM05D005191 ORTHO05D006725 8.9e-07 60.1 40 70.0


User provided reference genes

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