Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 1.1e-181 639.8 323 100.0
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 1.7e-169 599.4 323 92.3
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 3.6e-164 581.6 323 89.2
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 8.1e-164 580.5 323 88.9
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 6.4e-161 570.9 325 88.9
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 2.5e-133 479.2 327 76.8
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 2.0e-130 469.5 322 74.8
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 7.6e-130 467.6 327 75.2
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 7.6e-130 467.6 326 73.6
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 7.6e-130 467.6 329 73.3
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 1.1e-128 463.8 322 73.9
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 2.5e-128 462.6 331 73.1
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 4.2e-128 461.8 326 71.8
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 5.5e-128 461.5 326 73.3
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 5.5e-128 461.5 328 74.1
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 3.6e-127 458.8 328 71.6
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 3.6e-127 458.8 328 71.6
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 4.6e-127 458.4 330 73.0
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 7.9e-127 457.6 326 71.8
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 2.3e-126 456.1 324 72.8
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 3.0e-126 455.7 332 71.7
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 1.9e-125 453.0 326 71.2
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 3.3e-125 452.2 326 71.2
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 4.3e-125 451.8 326 71.8
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 1.3e-124 450.3 338 70.4
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 2.2e-124 449.5 326 72.1
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 4.8e-124 448.4 338 69.8
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 4.8e-124 448.4 326 70.6
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 6.3e-124 448.0 328 71.3
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 1.8e-123 446.4 331 70.1
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 3.1e-123 445.7 327 70.0
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 3.1e-123 445.7 325 71.7
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 4.1e-123 445.3 327 70.3
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 4.1e-123 445.3 339 69.3
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 5.3e-123 444.9 329 70.2
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 4.5e-122 441.8 322 70.2
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 4.5e-122 441.8 334 69.5
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 7.7e-122 441.0 329 70.2
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 1.0e-121 440.7 322 69.9
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 1.0e-121 440.7 332 69.3
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 1.7e-121 439.9 321 69.5
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 2.2e-121 439.5 324 70.1
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 2.9e-121 439.1 325 68.0
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 5.0e-121 438.3 324 69.1
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 5.0e-121 438.3 325 69.5
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 5.0e-121 438.3 327 69.4
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 6.5e-121 438.0 325 67.7
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 8.5e-121 437.6 325 68.3
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 8.5e-121 437.6 329 69.6
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 8.5e-121 437.6 325 69.5
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 8.5e-121 437.6 324 69.8
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 1.1e-120 437.2 324 70.7
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.9e-120 436.4 331 68.9
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.9e-120 436.4 326 70.9
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 3.2e-120 435.6 326 70.6
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 3.2e-120 435.6 325 69.8
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 3.2e-120 435.6 327 69.1
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 3.2e-120 435.6 342 67.3
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 4.2e-120 435.3 324 68.8
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 4.2e-120 435.3 328 69.2
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 7.2e-120 434.5 327 70.0
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 9.4e-120 434.1 326 66.9
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.2e-119 433.7 329 70.2
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.2e-119 433.7 326 69.6
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.1e-119 433.0 326 70.2
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 2.1e-119 433.0 326 68.4
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.6e-119 432.2 326 69.3
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 3.6e-119 432.2 326 69.9
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 4.6e-119 431.8 328 70.1
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 6.1e-119 431.4 324 70.1
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 1.4e-118 430.3 324 68.5
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 1.8e-118 429.9 330 69.7
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 3.0e-118 429.1 326 69.6
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 3.9e-118 428.7 324 66.4
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 3.9e-118 428.7 330 68.8
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 3.9e-118 428.7 329 69.3
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 5.1e-118 428.3 324 66.4
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 5.1e-118 428.3 325 68.9
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 8.8e-118 427.6 329 67.8
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.1e-117 427.2 325 68.6
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 1.5e-117 426.8 324 68.8
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 1.5e-117 426.8 327 68.5
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 1.5e-117 426.8 325 67.7
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 2.6e-117 426.0 351 65.8
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.4e-117 425.2 329 66.9
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 5.7e-117 424.9 325 67.1
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 7.4e-117 424.5 330 68.2
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 7.4e-117 424.5 316 69.0
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 2.2e-116 422.9 322 66.5
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 2.8e-116 422.5 326 67.2
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 3.7e-116 422.2 325 68.0
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 4.8e-116 421.8 287 74.2
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 1.4e-115 420.2 325 67.1
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 6.9e-115 417.9 327 67.6
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 7.7e-114 414.5 358 64.5
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 7.7e-114 414.5 316 67.7
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 9.4e-112 407.5 361 60.9
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 7.9e-111 404.4 328 65.9
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 1.0e-110 404.1 329 64.7
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 1.6e-106 390.2 266 71.4
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 3.5e-106 389.0 262 72.5
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 1.9e-104 383.3 387 54.0
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 2.5e-104 382.9 263 72.2
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 8.0e-103 377.9 295 67.8
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 2.2e-100 369.8 503 45.3
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 4.8e-100 368.6 317 63.7
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 5.3e-99 365.2 327 63.6
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 2.1e-87 326.6 192 84.4
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.4e-83 313.2 197 78.2
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 1.1e-80 304.3 257 56.8
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 1.9e-80 303.5 182 82.4
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 1.6e-79 300.4 263 55.1
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 1.8e-78 297.0 175 81.7
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 6.8e-78 295.0 167 86.8
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 1.1e-75 287.7 175 81.7
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 1.8e-75 287.0 167 83.8
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 6.4e-68 261.9 207 65.2
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 6.8e-54 215.3 124 87.1
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 7.8e-50 201.8 119 83.2
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.5e-48 197.6 119 81.5
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 4.3e-48 196.1 121 78.5
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.4e-46 190.3 191 55.5
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.9e-44 182.6 113 79.6
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 4.9e-44 182.6 134 62.7
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 6.0e-42 175.6 192 54.2
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.8e-38 164.1 119 73.1
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.4e-35 154.5 95 84.2
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 2.9e-28 130.2 153 48.4
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 4.0e-22 109.8 73 75.3
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 1.4e-11 74.7 129 38.8
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 1.4e-11 74.7 158 35.4
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 4.2e-11 73.2 49 65.3
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 4.6e-10 69.7 177 27.7
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 6.7e-09 65.9 195 29.2
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.5e-08 64.7 158 34.2
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 1.1e-06 58.5 180 29.4
Cre09.g386756 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 1.4e-06 58.2 177 28.2
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 3.1e-06 57.0 49 61.2


User provided reference genes

Program Settings