Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 2.5e-181 638.6 320 100.0
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 7.3e-149 530.8 289 90.7
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 1.6e-143 513.1 289 87.9
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 4.7e-132 474.9 288 84.7
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 6.2e-132 474.6 272 86.8
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.1e-131 473.8 272 87.5
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 2.9e-129 465.7 271 84.5
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 4.9e-129 464.9 278 83.1
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 1.4e-128 463.4 282 81.9
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 9.6e-125 450.7 274 81.8
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.1e-123 447.2 271 83.0
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 1.8e-123 446.4 284 77.5
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 2.4e-123 446.0 284 78.2
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 3.1e-123 445.7 286 77.3
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 6.9e-123 444.5 250 85.6
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.5e-122 443.4 299 75.3
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.5e-122 443.4 252 84.9
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 4.5e-122 441.8 271 81.2
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 7.6e-122 441.0 272 80.5
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.2e-121 439.5 279 78.5
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 2.4e-120 436.0 275 78.5
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 7.1e-120 434.5 269 78.8
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 9.3e-120 434.1 280 77.1
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 1.2e-119 433.7 271 79.3
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 2.1e-119 433.0 258 83.7
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 7.9e-119 431.0 275 77.5
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 5.1e-118 428.3 271 78.2
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 5.1e-118 428.3 274 77.7
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 6.7e-118 427.9 268 78.4
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 8.7e-118 427.6 271 77.5
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 1.1e-117 427.2 259 80.3
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.1e-117 427.2 286 74.5
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 7.4e-117 424.5 237 87.3
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.3e-116 423.7 256 79.7
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 1.3e-116 423.7 245 83.7
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 2.1e-116 422.9 270 76.7
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 3.6e-116 422.2 256 78.9
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 3.6e-116 422.2 256 79.7
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 1.8e-115 419.9 251 79.3
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 2.4e-115 419.5 249 81.9
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 5.3e-115 418.3 253 80.6
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.2e-114 417.2 251 79.3
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 1.5e-114 416.8 251 79.3
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 2.0e-114 416.4 321 67.9
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 5.8e-114 414.8 251 78.5
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 9.9e-114 414.1 258 79.1
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 1.7e-113 413.3 264 79.2
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 3.8e-113 412.1 251 78.1
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 4.9e-113 411.8 279 73.8
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 6.4e-113 411.4 279 73.8
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 6.4e-113 411.4 279 73.8
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 1.4e-112 410.2 274 74.5
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 3.2e-112 409.1 256 77.0
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 3.2e-112 409.1 252 79.0
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 3.2e-112 409.1 252 79.0
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 3.2e-112 409.1 248 81.5
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 4.2e-112 408.7 275 73.8
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 4.2e-112 408.7 292 72.3
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 1.2e-111 407.1 287 71.1
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 2.1e-111 406.4 269 74.3
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 2.7e-111 406.0 272 74.3
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 1.3e-110 403.7 251 78.1
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 3.9e-110 402.1 273 71.8
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 1.1e-109 400.6 264 73.1
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 1.9e-109 399.8 248 76.6
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 9.6e-109 397.5 269 75.5
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 1.1e-107 394.0 259 75.3
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 2.4e-107 392.9 255 76.5
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 3.4e-106 389.0 268 71.6
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 3.4e-106 389.0 268 71.6
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 5.8e-106 388.3 268 72.4
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 2.9e-105 386.0 248 76.2
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.8e-105 385.6 252 74.6
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 6.5e-105 384.8 269 71.0
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 8.4e-105 384.4 268 73.5
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 2.5e-104 382.9 249 75.9
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 7.1e-104 381.3 295 65.8
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 9.3e-104 380.9 268 69.8
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 1.6e-103 380.2 275 69.5
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 2.3e-102 376.3 270 68.9
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 8.7e-102 374.4 271 67.9
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 3.3e-101 372.5 271 69.0
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 2.0e-98 363.2 205 84.9
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.7e-97 360.1 246 71.1
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 8.5e-97 357.8 238 73.1
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.2e-95 354.0 246 68.7
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 1.3e-94 350.5 259 68.7
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 3.0e-94 349.4 269 65.1
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 8.7e-94 347.8 206 80.6
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 3.1e-91 339.3 276 65.2
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 2.0e-90 336.7 272 63.2
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.8e-86 323.6 300 59.7
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.5e-85 320.5 300 60.0
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 3.3e-85 319.3 271 62.7
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 4.8e-84 315.5 271 60.1
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 8.2e-84 314.7 276 58.7
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 1.2e-82 310.8 251 63.3
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 1.2e-82 310.8 169 85.8
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 1.5e-82 310.5 273 62.6
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 6.5e-81 305.1 169 83.4
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 1.9e-80 303.5 271 60.9
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 3.9e-78 295.8 238 64.3
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 6.7e-78 295.0 266 59.8
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.3e-76 290.8 249 60.6
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.7e-73 280.4 274 57.7
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 3.2e-72 276.2 254 55.5
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 3.6e-71 272.7 254 59.4
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.6e-69 266.5 356 49.2
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.3e-68 264.2 165 76.4
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 4.7e-63 245.7 155 74.8
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 9.8e-61 238.0 305 46.2
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 8.3e-60 235.0 171 70.2
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 4.0e-54 216.1 239 50.6
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 4.4e-53 212.6 271 43.9
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 5.7e-53 212.2 212 52.8
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 4.9e-44 182.6 168 57.7
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.2e-43 179.9 128 69.5
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 9.2e-43 178.3 114 75.4
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 2.7e-42 176.8 251 40.6
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 5.4e-35 152.5 85 84.7
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 4.6e-34 149.4 107 68.2
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 5.2e-30 136.0 76 84.2
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 2.2e-28 130.6 131 55.0
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 3.0e-25 120.2 88 69.3
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 1.3e-20 104.8 85 64.7
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 2.7e-18 97.1 199 32.7
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 1.5e-16 91.3 84 57.1
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.2e-15 88.2 74 64.9
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.6e-13 80.5 38 92.1
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 3.8e-12 76.6 66 57.6
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 7.1e-11 72.4 59 66.1
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 7.1e-11 72.4 59 61.0
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-10 71.6 37 86.5
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-10 71.6 37 86.5
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 1.8e-06 57.8 42 64.3
Solyc01g057003.1 Solanum lycopersicum HOM05D005868 ORTHO05D006964 5.3e-06 56.2 40 60.0


User provided reference genes

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