Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 5.9e-225 783.9 394 100.0
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 3.8e-155 552.0 331 84.6
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 1.1e-154 550.4 330 85.5
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 2.1e-145 519.6 329 81.2
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 6.9e-141 504.6 333 77.2
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 9.0e-141 504.2 333 77.2
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.5e-140 501.9 333 77.2
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.0e-137 491.5 331 76.1
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 7.9e-137 491.1 331 75.8
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.3e-136 489.6 331 76.1
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 6.1e-121 438.3 333 66.7
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 4.3e-119 432.2 334 67.4
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 9.7e-119 431.0 331 66.8
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 3.7e-118 429.1 328 66.5
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 4.8e-118 428.7 332 65.7
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 2.6e-116 422.9 327 66.4
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 7.7e-116 421.4 338 64.5
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.3e-115 420.6 332 64.5
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 3.8e-115 419.1 329 64.1
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 1.4e-114 417.2 327 64.8
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 1.9e-114 416.8 326 66.9
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 3.2e-114 416.0 332 64.2
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 9.4e-114 414.5 333 63.4
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 8.2e-110 401.4 333 62.2
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.1e-109 399.4 334 62.9
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 4.1e-109 399.1 330 62.7
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 6.9e-109 398.3 342 59.6
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 5.9e-108 395.2 324 63.9
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 2.2e-107 393.3 321 64.8
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.1e-106 391.0 331 59.5
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 1.4e-106 390.6 335 59.1
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 9.4e-106 387.9 331 59.5
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 2.1e-105 386.7 326 62.0
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.7e-105 386.3 333 59.5
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 3.6e-105 386.0 319 63.3
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.6e-105 386.0 336 61.9
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 6.1e-105 385.2 325 62.5
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 6.7e-104 381.7 331 59.2
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 8.8e-104 381.3 333 59.2
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 1.1e-103 380.9 327 61.8
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.5e-103 380.6 330 57.3
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.4e-103 379.0 328 59.8
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.8e-102 376.3 333 57.7
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.7e-102 375.9 328 59.1
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 6.3e-102 375.2 330 58.8
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 8.2e-102 374.8 328 61.6
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 1.4e-101 374.0 340 58.2
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.4e-101 374.0 328 61.0
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 3.1e-101 372.9 323 57.0
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 2.0e-100 370.2 275 68.7
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 3.5e-100 369.4 330 56.7
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 3.5e-100 369.4 328 60.4
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 5.9e-100 368.6 354 57.1
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 7.7e-100 368.2 329 57.8
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.0e-99 367.9 328 60.1
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.7e-99 367.1 351 58.1
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.2e-99 366.7 318 60.4
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.8e-99 365.9 321 59.5
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.8e-99 365.9 340 57.9
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.5e-99 365.2 321 59.8
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 1.1e-98 364.4 291 62.5
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.9e-98 363.6 335 59.1
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 9.4e-98 361.3 314 60.2
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 9.4e-98 361.3 337 56.1
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.1e-97 360.1 313 59.4
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 2.7e-97 359.8 328 57.3
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 6.1e-97 358.6 336 56.0
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 2.3e-96 356.7 315 60.0
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.0e-96 356.3 329 57.8
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 4.0e-96 355.9 329 55.6
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 6.7e-96 355.1 336 55.1
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 2.0e-95 353.6 259 66.8
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 2.6e-95 353.2 334 55.4
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 5.7e-95 352.1 338 54.1
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 7.5e-95 351.7 305 61.0
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.5e-95 351.7 332 56.9
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 9.7e-95 351.3 308 58.8
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 1.3e-94 350.9 334 54.8
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 3.7e-94 349.4 330 55.2
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 4.8e-94 349.0 346 53.8
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 6.3e-94 348.6 340 54.7
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 8.2e-94 348.2 321 55.5
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 8.2e-94 348.2 335 52.2
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 2.4e-93 346.7 334 55.4
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 2.4e-93 346.7 330 53.6
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 2.4e-93 346.7 329 52.3
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 3.1e-93 346.3 333 55.6
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 4.1e-93 345.9 308 57.1
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 5.3e-93 345.5 331 55.9
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.0e-93 345.1 332 56.3
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 7.0e-93 345.1 324 54.3
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 9.1e-93 344.7 331 55.6
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 9.1e-93 344.7 328 57.6
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.2e-92 344.4 333 55.6
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 3.5e-92 342.8 329 55.3
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 3.5e-92 342.8 369 48.8
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 3.5e-92 342.8 340 53.8
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 4.5e-92 342.4 329 52.9
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 4.5e-92 342.4 250 67.6
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 4.5e-92 342.4 327 52.3
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 5.9e-92 342.0 328 56.4
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.9e-92 342.0 339 51.9
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 1.3e-91 340.9 334 54.2
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 2.2e-91 340.1 308 56.2
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 5.0e-91 339.0 338 54.7
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 1.1e-90 337.8 318 54.1
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 1.5e-90 337.4 308 55.8
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 1.5e-90 337.4 334 50.9
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.9e-90 337.0 338 51.2
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 1.9e-90 337.0 308 54.9
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 2.5e-90 336.7 332 53.3
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 3.2e-90 336.3 310 55.2
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 9.4e-90 334.7 306 57.2
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 1.6e-89 334.0 329 54.1
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.1e-89 333.6 304 58.9
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 2.7e-89 333.2 312 56.1
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 2.7e-89 333.2 307 56.7
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 3.6e-89 332.8 308 55.2
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 4.7e-89 332.4 337 53.4
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.7e-89 332.4 316 56.0
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 6.1e-89 332.0 305 54.8
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 6.1e-89 332.0 305 55.1
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 6.1e-89 332.0 305 54.8
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 8.0e-89 331.6 321 56.1
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 1.4e-88 330.9 305 55.1
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.4e-88 330.9 315 54.0
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 8.8e-88 328.2 338 50.0
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 2.0e-87 327.0 291 58.8
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 4.4e-87 325.9 328 54.3
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 5.7e-87 325.5 258 61.2
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 1.7e-86 323.9 281 59.8
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 2.8e-86 323.2 311 55.0
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 4.8e-86 322.4 290 58.6
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 6.3e-86 322.0 328 48.8
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 2.7e-84 316.6 291 56.7
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 2.7e-84 316.6 291 56.7
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 1.7e-83 313.9 252 63.1
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 1.7e-83 313.9 305 55.4
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 2.5e-82 310.1 289 56.7
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 1.4e-80 304.3 310 51.9
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 2.3e-80 303.5 256 59.8
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 2.3e-80 303.5 363 49.0
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.6e-76 290.8 287 52.3
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 5.6e-74 282.3 299 49.5
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 1.6e-73 280.8 261 56.3
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 4.7e-73 279.3 247 59.9
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 1.0e-72 278.1 246 55.3
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 3.0e-72 276.6 242 59.5
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 2.2e-70 270.4 254 53.9
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 3.7e-70 269.6 305 47.5
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 9.2e-69 265.0 258 55.8
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 1.7e-67 260.8 306 44.4
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.1e-66 258.1 251 51.0
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.6e-65 254.2 159 74.2
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 2.4e-61 240.4 157 67.5
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 9.5e-58 228.4 179 57.0
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 9.2e-53 211.8 218 50.9
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.1e-52 210.7 189 54.0
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 3.0e-51 206.8 199 54.3
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.6e-50 202.6 246 48.4
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.7e-49 199.5 131 74.0
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 1.2e-47 194.9 283 43.8
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 1.2e-41 174.9 228 45.2
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 2.1e-41 174.1 225 45.3
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 2.2e-38 164.1 257 38.1
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 6.6e-35 152.5 194 44.8
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 2.4e-32 144.1 128 61.7
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 4.5e-31 139.8 90 71.1
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.9e-28 129.0 76 78.9
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 1.8e-27 127.9 116 52.6
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 1.9e-26 124.4 97 64.9
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 4.0e-24 116.7 80 68.8
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 1.7e-22 111.3 84 64.3
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 1.5e-18 98.2 81 55.6
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 6.7e-11 72.8 56 58.9


User provided reference genes

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