Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G116800 Theobroma cacao HOM05D006393 ORTHO05D008088 7.5e-153 543.9 288 100.0
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 1.9e-140 502.7 288 91.7
Duzib168G1441 Durio zibethinus HOM05D006393 ORTHO05D008088 6.2e-139 497.7 288 91.0
Gohir.D06G058100 Gossypium hirsutum HOM05D006393 ORTHO05D008088 1.5e-132 476.5 288 86.5
Gohir.A06G059900 Gossypium hirsutum HOM05D006393 ORTHO05D008088 1.9e-132 476.1 288 86.8
Gorai.010G068300 Gossypium raimondii HOM05D006393 ORTHO05D008088 1.9e-132 476.1 288 86.5
Cfa003299 Carpinus fangiana HOM05D006393 ORTHO05D008088 1.2e-129 466.8 288 83.3
TWI34G1546 Tripterygium wilfordii HOM05D006393 ORTHO05D008088 1.2e-129 466.8 288 83.3
Haze_25669 Corylus avellana HOM05D006393 ORTHO05D008088 2.6e-129 465.7 288 84.0
QL02p086364 Quercus lobata HOM05D006393 ORTHO05D008088 7.5e-129 464.2 287 82.9
CiPaw.03G236400 Carya illinoinensis HOM05D006393 ORTHO05D008088 2.9e-128 462.2 288 82.3
Manes.16G064200 Manihot esculenta HOM05D006393 ORTHO05D008088 1.9e-127 459.5 288 81.2
GSVIVG01015453001 Vitis vinifera HOM05D006393 ORTHO05D008088 4.1e-127 458.4 288 81.2
Ciclev10008889m.g Citrus clementina HOM05D006393 ORTHO05D008088 2.1e-126 456.1 288 82.6
Cpa.g.sc23.161 Carica papaya HOM05D006393 ORTHO05D008088 3.5e-126 455.3 288 81.2
Atru.chr7.1280 Acer truncatum HOM05D006393 ORTHO05D008088 4.6e-126 454.9 288 80.9
Prupe.7G235100 Prunus persica HOM05D006393 ORTHO05D008088 7.8e-126 454.1 288 78.8
CsaV3_1G030940 Cucumis sativus L. HOM05D006393 ORTHO05D008088 3.0e-125 452.2 288 78.5
Sed0023374 Sechium edule HOM05D006393 ORTHO05D008088 1.1e-124 450.3 288 79.2
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 2.5e-124 449.1 288 80.6
MELO3C025307.2 Cucumis melo HOM05D006393 ORTHO05D008088 5.6e-124 448.0 288 77.8
CSS0031330 Camellia sinensis var. sinensis HOM05D006393 ORTHO05D008088 2.1e-123 446.0 288 78.5
Rhsim01G0090600 Rhododendron simsii HOM05D006393 ORTHO05D008088 1.4e-122 443.4 288 78.8
ClCG06G010490 Citrullus lanatus HOM05D006393 ORTHO05D008088 1.8e-122 443.0 289 76.8
FvH4_1g04221 Fragaria vesca HOM05D006393 ORTHO05D008088 4.0e-122 441.8 288 76.4
RcHm_v2.0_Chr2g0089771 Rosa chinensis HOM05D006393 ORTHO05D008088 1.2e-121 440.3 288 76.0
PGR102G0276 Punica granatum HOM05D006393 ORTHO05D008088 1.5e-121 439.9 288 78.5
MD02G1061500 Malus domestica HOM05D006393 ORTHO05D008088 2.0e-121 439.5 288 76.0
Potri.018G073000 Populus trichocarpa HOM05D006393 ORTHO05D008088 2.0e-121 439.5 288 77.4
vmacro20677 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 5.8e-121 438.0 288 78.1
Hma1.2p1_0018F.1_g013070 Hydrangea macrophylla HOM05D006393 ORTHO05D008088 1.3e-120 436.8 288 78.5
Aqoxy7G01879 Aquilegia oxysepala HOM05D006393 ORTHO05D008088 2.2e-120 436.0 287 77.7
Hund09172 Selenicereus undatus HOM05D006393 ORTHO05D008088 2.9e-120 435.6 288 75.7
Nn8g39292 Nelumbo nucifera HOM05D006393 ORTHO05D008088 6.4e-120 434.5 288 78.1
CAN.G1665.6 Capsicum annuum HOM05D006393 ORTHO05D008088 3.2e-119 432.2 288 75.7
MSTRG.1197 Avicennia marina HOM05D006393 ORTHO05D008088 1.2e-118 430.3 288 76.7
arahy.Tifrunner.gnm1.ann1.RZM4QH Arachis hypogaea HOM05D006393 ORTHO05D008088 3.5e-118 428.7 282 74.8
Migut.C00826 Erythranthe guttata HOM05D006393 ORTHO05D008088 3.5e-118 428.7 288 75.0
Nitab4.5_0002551g0020 Nicotiana tabacum HOM05D006393 ORTHO05D008088 2.3e-117 426.0 288 74.7
PGSC0003DMG401029823 Solanum tuberosum HOM05D006393 ORTHO05D008088 2.3e-117 426.0 288 74.3
AUR62033415 Chenopodium quinoa HOM05D006393 ORTHO05D008088 3.9e-117 425.2 288 74.0
Solyc10g079970.2 Solanum lycopersicum HOM05D006393 ORTHO05D008088 3.9e-117 425.2 288 74.0
DCAR_010438 Daucus carota HOM05D006393 ORTHO05D008088 1.1e-116 423.7 288 74.3
Sopen10g030590 Solanum pennellii HOM05D006393 ORTHO05D008088 1.9e-116 422.9 288 73.6
AT5G19930 Arabidopsis thaliana HOM05D006393 ORTHO05D008088 2.5e-116 422.5 280 75.4
arahy.Tifrunner.gnm1.ann1.3AE437 Arachis hypogaea HOM05D006393 ORTHO05D008088 2.5e-116 422.5 280 74.3
Aa31LG9G6050 Aethionema arabicum HOM05D006393 ORTHO05D008088 1.2e-115 420.2 280 73.9
PSO782G0281 Papaver somniferum HOM05D006393 ORTHO05D008088 1.2e-115 420.2 282 74.5
Lalb_Chr13g0302251 Lupinus albus HOM05D006393 ORTHO05D008088 2.1e-115 419.5 283 75.3
Carub.0006s1830 Capsella rubella HOM05D006393 ORTHO05D008088 8.1e-115 417.5 280 73.2
Sabra18G0063700 Salix brachista HOM05D006393 ORTHO05D008088 8.1e-115 417.5 288 75.7
Sp6g24450 Schrenkiella parvula HOM05D006393 ORTHO05D008088 1.1e-114 417.2 280 74.6
SGA_v2.0_scaffold92G28235 Striga asiatica HOM05D006393 ORTHO05D008088 1.4e-114 416.8 288 74.7
AL6G31460 Arabidopsis lyrata HOM05D006393 ORTHO05D008088 3.1e-114 415.6 280 73.9
HanXRQChr03g0062141 Helianthus annuus HOM05D006393 ORTHO05D008088 6.8e-114 414.5 288 72.6
Thhalv10014278m.g Eutrema salsugineum HOM05D006393 ORTHO05D008088 8.9e-114 414.1 280 73.9
BcaB08g36553 Brassica carinata HOM05D006393 ORTHO05D008088 1.5e-113 413.3 280 73.9
Ca_21724_v3 Cicer arietinum L. HOM05D006393 ORTHO05D008088 2.6e-113 412.5 282 74.1
BraA10t44056Z Brassica rapa HOM05D006393 ORTHO05D008088 5.8e-113 411.4 280 73.2
BcaC04g19399 Brassica carinata HOM05D006393 ORTHO05D008088 9.9e-113 410.6 280 73.6
A10p19800 Brassica napus HOM05D006393 ORTHO05D008088 9.9e-113 410.6 280 73.6
C09p56120 Brassica napus HOM05D006393 ORTHO05D008088 9.9e-113 410.6 280 73.6
BolC9t58479H Brassica oleracea HOM05D006393 ORTHO05D008088 9.9e-113 410.6 280 73.6
Lj4g0026371 Lotus japonicus HOM05D006393 ORTHO05D008088 1.3e-112 410.2 282 74.1
Lj7A639G46 Lonicera japonica HOM05D006393 ORTHO05D008088 2.2e-112 409.5 322 67.7
TPR.G26762 Trifolium pratense HOM05D006393 ORTHO05D008088 3.2e-111 405.6 283 72.4
EL10Ac8g18557 Beta vulgaris HOM05D006393 ORTHO05D008088 9.3e-111 404.1 288 72.2
unitig_37.g13035 Utricularia gibba HOM05D006393 ORTHO05D008088 2.7e-110 402.5 288 71.2
MBI01_g13571_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 4.6e-110 401.7 290 74.1
FAN23G0113 Fragaria x ananassa HOM05D006393 ORTHO05D008088 7.8e-110 401.0 288 71.5
Phvul.003G159300 Phaseolus vulgaris HOM05D006393 ORTHO05D008088 7.8e-110 401.0 282 70.6
THA.LOC104815111 Tarenaya hassleriana HOM05D006393 ORTHO05D008088 7.8e-110 401.0 284 72.9
Psat4g042480 Pisum sativum HOM05D006393 ORTHO05D008088 5.1e-109 398.3 283 71.7
CDE06G0973 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 8.7e-109 397.5 279 71.7
VMungo1215G0586 Vigna mungo HOM05D006393 ORTHO05D008088 3.3e-108 395.6 282 70.2
MBI04_g35350_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 4.3e-108 395.2 249 79.5
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 1.8e-106 389.8 264 73.9
Medtr4g112990 Medicago truncatula HOM05D006393 ORTHO05D008088 2.4e-106 389.4 283 68.9
Eucgr.C04142 Eucalyptus grandis HOM05D006393 ORTHO05D008088 4.0e-106 388.7 251 74.9
Glyma.17G120200 Glycine max HOM05D006393 ORTHO05D008088 2.0e-105 386.3 285 69.5
Lsat_1_v5_gn_7_42880 Lactuca sativa HOM05D006393 ORTHO05D008088 5.8e-105 384.8 288 69.1
Ah.14g081310 Amaranthus hybridus HOM05D006393 ORTHO05D008088 1.9e-103 379.8 348 61.2
Oeu046267.2 Olea europaea HOM05D006393 ORTHO05D008088 1.6e-102 376.7 426 51.9
Os01g0507300 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 1.0e-101 374.0 279 67.7
Nitab4.5_0010615g0010 Nicotiana tabacum HOM05D006393 ORTHO05D008088 8.7e-101 370.9 249 73.9
Zm00001eb106640 Zea mays HOM05D006393 ORTHO05D008088 1.9e-100 369.8 279 66.3
Peaxi162Scf00223g01425 Petunia axillaris HOM05D006393 ORTHO05D008088 5.3e-98 361.7 301 64.8
HPP92_008697 Vanilla planifolia HOM05D006393 ORTHO05D008088 6.9e-98 361.3 288 62.8
HPP92_009792 Vanilla planifolia HOM05D006393 ORTHO05D008088 2.0e-97 359.8 288 62.5
Zm00001eb122440 Zea mays HOM05D006393 ORTHO05D008088 1.3e-96 357.1 271 66.1
Cc06_g09230 Coffea canephora HOM05D006393 ORTHO05D008088 3.8e-96 355.5 236 76.7
ATR0083G026 Amborella trichopoda HOM05D006393 ORTHO05D008088 1.1e-95 354.0 283 65.0
SEGI_37175 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 7.9e-94 347.8 288 60.4
Sc07g0007380 Simmondsia chinensis HOM05D006393 ORTHO05D008088 7.4e-92 341.3 236 73.3
Os01g0178200 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 4.8e-91 338.6 322 56.2
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 2.2e-88 329.7 284 58.8
SalBow7G4467 Salvia bowleyana HOM05D006393 ORTHO05D008088 6.5e-88 328.2 288 62.8
ECA240G0151 Erigeron canadensis HOM05D006393 ORTHO05D008088 2.1e-86 323.2 222 72.1
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 3.0e-85 319.3 251 67.7
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 2.6e-81 306.2 286 54.2
Pp3c12_24880 Physcomitrium patens HOM05D006393 ORTHO05D008088 1.7e-80 303.5 282 55.3
CARHR192920 Cardamine hirsuta HOM05D006393 ORTHO05D008088 8.5e-80 301.2 200 75.0
Oeu027539.2 Olea europaea HOM05D006393 ORTHO05D008088 2.2e-75 286.6 296 56.4
Peaxi162Scf00223g01424 Petunia axillaris HOM05D006393 ORTHO05D008088 8.2e-75 284.6 243 63.8
TAR636G2166 Trochodendron aralioides HOM05D006393 ORTHO05D008088 9.7e-60 234.6 143 83.2
CDE07G1479 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 2.2e-56 223.4 164 64.6
PRCOL_00002470 Prasinoderma coloniale HOM05D006393 ORTHO05D008088 8.0e-54 214.9 273 46.9
Cre17.g726350 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 8.2e-51 204.9 317 41.3
SEGI_23420 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 8.5e-48 194.9 181 53.0
Eucgr.L03082 Eucalyptus grandis HOM05D006393 ORTHO05D008088 5.0e-40 169.1 135 65.9
SEGI_36873 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 8.5e-40 168.3 181 52.5
Cre02.g118200 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 2.3e-37 160.2 329 35.0
Psat6g218400 Pisum sativum HOM05D006393 ORTHO05D008088 6.8e-37 158.7 114 74.6
MCO12G460 Micromonas commoda HOM05D006393 ORTHO05D008088 1.6e-33 147.5 183 45.9
Glyma.05G012000 Glycine max HOM05D006393 ORTHO05D008088 2.0e-33 147.1 117 67.5
SEGI_10855 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 2.6e-28 130.2 189 41.8
Eucgr.E03680 Eucalyptus grandis HOM05D006393 ORTHO05D008088 4.9e-27 125.9 98 65.3
Psat5g214680 Pisum sativum HOM05D006393 ORTHO05D008088 8.3e-27 125.2 92 70.7
Zm00001eb342450 Zea mays HOM05D006393 ORTHO05D008088 2.3e-24 117.1 161 42.9
vmacro16552 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 2.0e-12 77.4 144 43.1
TAR636G3545 Trochodendron aralioides HOM05D006393 ORTHO05D008088 4.1e-10 69.7 50 70.0
SEGI_30446 Sequoiadendron giganteum HOM05D006393 ORTHO05D000979 5.4e-10 69.3 58 55.2
SEGI_14370 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 2.7e-09 67.0 58 53.4
Actinidia20331 Actinidia chinensis HOM05D006393 ORTHO05D008088 1.9e-07 60.8 69 55.1
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 5.6e-07 59.3 234 27.8
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 1.6e-06 57.8 252 26.2
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 3.6e-06 56.6 253 26.1


User provided reference genes

Program Settings