Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G114800 Theobroma cacao HOM05D008584 ORTHO05D010813 7.1e-29 129.8 61 100.0
Duzib168G0012 Durio zibethinus HOM05D008584 ORTHO05D010813 3.1e-24 114.4 63 87.3
Gohir.A05G021200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 4.2e-21 104.0 61 82.0
Gohir.D05G022600 Gossypium hirsutum HOM05D008584 ORTHO05D010813 4.2e-21 104.0 61 82.0
CANSAT56G1052 Cannabis sativa HOM05D008584 ORTHO05D010813 6.3e-17 90.1 59 71.2
MD02G1062300 Malus domestica HOM05D008584 ORTHO05D010813 1.5e-15 85.5 59 72.9
CiPaw.04G167100 Carya illinoinensis HOM05D008584 ORTHO05D010813 4.5e-15 84.0 56 75.0
RcHm_v2.0_Chr2g0091061 Rosa chinensis HOM05D008584 ORTHO05D010813 4.5e-15 84.0 61 65.6
FAN28G0880 Fragaria x ananassa HOM05D008584 ORTHO05D010813 5.9e-15 83.6 61 63.9
Gohir.D07G004000 Gossypium hirsutum HOM05D008584 ORTHO05D010813 1.3e-14 82.4 61 68.9
Prupe.7G227100 Prunus persica HOM05D008584 ORTHO05D010813 8.5e-14 79.7 41 85.4
AL9U10260 Arabidopsis lyrata HOM05D008584 ORTHO05D010813 3.2e-13 77.8 51 72.5
C08p08150 Brassica napus HOM05D008584 ORTHO05D010813 3.2e-13 77.8 45 82.2
BolC8t47667H Brassica oleracea HOM05D008584 ORTHO05D010813 3.2e-13 77.8 45 82.2
CsaV3_2G002450 Cucumis sativus L. HOM05D008584 ORTHO05D010813 4.2e-13 77.4 53 69.8
Phvul.011G012500 Phaseolus vulgaris HOM05D008584 ORTHO05D010813 4.2e-13 77.4 45 77.8
A08p06820 Brassica napus HOM05D008584 ORTHO05D010813 9.4e-13 76.3 52 76.9
BraA08t32700Z Brassica rapa HOM05D008584 ORTHO05D010813 9.4e-13 76.3 52 76.9
ClCG11G002630 Citrullus lanatus HOM05D008584 ORTHO05D010813 9.4e-13 76.3 60 63.3
Potri.018G072101 Populus trichocarpa HOM05D008584 ORTHO05D010813 9.4e-13 76.3 40 85.0
Manes.03G068582 Manihot esculenta HOM05D008584 ORTHO05D010813 3.6e-12 74.3 41 80.5
CARHR218960 Cardamine hirsuta HOM05D008584 ORTHO05D010813 4.6e-12 73.9 40 82.5
AT4G13395 Arabidopsis thaliana HOM05D008584 ORTHO05D010813 7.9e-12 73.2 54 66.7
Manes.03G068566 Manihot esculenta HOM05D008584 ORTHO05D010813 1.0e-11 72.8 41 78.0
Nn2g11826 Nelumbo nucifera HOM05D008584 ORTHO05D010813 1.0e-11 72.8 46 67.4
Gohir.A13G196900 Gossypium hirsutum HOM05D008584 ORTHO05D010813 1.8e-11 72.0 62 62.9
Gohir.D13G202200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 1.8e-11 72.0 62 62.9
Gorai.013G231100 Gossypium raimondii HOM05D008584 ORTHO05D010813 1.8e-11 72.0 62 62.9
CSS0042146 Camellia sinensis var. sinensis HOM05D008584 ORTHO05D010813 2.3e-11 71.6 61 54.1
Carub.0007s2917 Capsella rubella HOM05D008584 ORTHO05D010813 2.3e-11 71.6 56 67.9
Nn8g39267 Nelumbo nucifera HOM05D008584 ORTHO05D010813 5.1e-11 70.5 57 57.9
Cc06_g09330 Coffea canephora HOM05D008584 ORTHO05D010813 8.8e-11 69.7 64 56.2
CAN.G1710.8 Capsicum annuum HOM05D008584 ORTHO05D010813 1.1e-10 69.3 61 57.4
HPP92_000677 Vanilla planifolia HOM05D008584 ORTHO05D010813 7.4e-10 66.6 45 64.4
HPP92_005548 Vanilla planifolia HOM05D008584 ORTHO05D010813 1.4e-08 62.4 56 51.8
Sed0002148 Sechium edule HOM05D008584 ORTHO05D010813 1.8e-08 62.0 42 66.7
Os05g0179100 Oryza sativa ssp. japonica HOM05D008584 ORTHO05D010813 5.3e-08 60.5 61 47.5
Prupe.2G209600 Prunus persica HOM05D001415 ORTHO05D001075 9.1e-08 59.7 48 52.1
Lsat_1_v5_gn_5_100260 Lactuca sativa HOM05D008584 ORTHO05D010813 1.2e-07 59.3 55 52.7
Nn2g15804 Nelumbo nucifera HOM05D008584 ORTHO05D010813 1.5e-07 58.9 35 68.6
Nn2g15810 Nelumbo nucifera HOM05D008584 ORTHO05D010813 1.5e-07 58.9 35 68.6
Zm00001eb282970 Zea mays HOM05D008584 ORTHO05D010813 2.6e-07 58.2 36 63.9
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 3.4e-07 57.8 50 48.0
CsaV3_1G030850 Cucumis sativus L. HOM05D008584 ORTHO05D010813 4.5e-07 57.4 50 56.0
MD01G1103800 Malus domestica HOM05D001415 ORTHO05D001075 4.5e-07 57.4 51 47.1
MELO3C021616.2 Cucumis melo HOM05D001415 ORTHO05D001075 1.0e-06 56.2 51 43.1
CsaV3_5G026780 Cucumis sativus L. HOM05D001415 ORTHO05D001075 1.0e-06 56.2 51 43.1
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 1.3e-06 55.8 51 43.1
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 1.3e-06 55.8 51 43.1
FAN10G0897 Fragaria x ananassa HOM05D001415 ORTHO05D001075 1.3e-06 55.8 45 46.7
Manes.07G117800 Manihot esculenta HOM05D001415 ORTHO05D001075 1.3e-06 55.8 51 43.1
Manes.10G028700 Manihot esculenta HOM05D001415 ORTHO05D001075 1.3e-06 55.8 51 41.2
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 1.3e-06 55.8 50 44.0
TPR.G23565 Trifolium pratense HOM05D001415 ORTHO05D001075 1.7e-06 55.5 41 53.7
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 2.2e-06 55.1 50 42.0
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 2.2e-06 55.1 43 48.8
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 2.2e-06 55.1 42 47.6
MD04G1094700 Malus domestica HOM05D001415 ORTHO05D001075 2.9e-06 54.7 57 45.6
Actinidia02936 Actinidia chinensis HOM05D001415 ORTHO05D001075 3.8e-06 54.3 51 43.1
CiPaw.01G289500 Carya illinoinensis HOM05D001415 ORTHO05D001075 3.8e-06 54.3 51 41.2
LjContig00141g0017499 Lotus japonicus HOM05D001415 ORTHO05D001075 3.8e-06 54.3 43 48.8
Cfa001452 Carpinus fangiana HOM05D001415 ORTHO05D001075 5.0e-06 53.9 51 43.1
Haze_17089 Corylus avellana HOM05D001415 ORTHO05D001075 5.0e-06 53.9 51 43.1
FAN03G1064 Fragaria x ananassa HOM05D001415 ORTHO05D001075 5.0e-06 53.9 45 46.7
Glyma.10G208500 Glycine max HOM05D001415 ORTHO05D001075 5.0e-06 53.9 33 60.6
Glyma.12G061000 Glycine max HOM05D008503 ORTHO05D001075 5.0e-06 53.9 44 50.0
Nn1g07145 Nelumbo nucifera HOM05D008941 ORTHO05D010842 5.0e-06 53.9 33 63.6
Zm00001eb122380 Zea mays HOM05D008584 ORTHO05D010813 5.0e-06 53.9 42 59.5
BcaC07g39877 Brassica carinata HOM05D001415 ORTHO05D001075 6.5e-06 53.5 44 50.0
A09p48520 Brassica napus HOM05D001415 ORTHO05D001075 6.5e-06 53.5 44 50.0
C08p30820 Brassica napus HOM05D001415 ORTHO05D001075 6.5e-06 53.5 44 50.0
BolC8t50708H Brassica oleracea HOM05D001415 ORTHO05D001075 6.5e-06 53.5 44 50.0
BraA09t40304Z Brassica rapa HOM05D001415 ORTHO05D001075 6.5e-06 53.5 44 50.0
CiPaw.02G185400 Carya illinoinensis HOM05D001415 ORTHO05D001075 6.5e-06 53.5 51 39.2
Lalb_Chr17g0346301 Lupinus albus HOM05D001415 ORTHO05D001075 6.5e-06 53.5 58 41.4
Prupe.2G237800 Prunus persica HOM05D001415 ORTHO05D001075 6.5e-06 53.5 43 48.8
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea HOM05D001415 ORTHO05D001075 8.5e-06 53.1 37 54.1
CANSAT56G2970 Cannabis sativa HOM05D001415 ORTHO05D001075 8.5e-06 53.1 44 54.5
Carub.0008s2019 Capsella rubella HOM05D008503 ORTHO05D001075 8.5e-06 53.1 56 44.6
Glyma.02G248900 Glycine max HOM05D001415 ORTHO05D001075 8.5e-06 53.1 60 43.3
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 8.5e-06 53.1 51 47.1
Sed0008951 Sechium edule HOM05D001415 ORTHO05D001075 8.5e-06 53.1 39 48.7
TPR.G3500 Trifolium pratense HOM05D001415 ORTHO05D001075 8.5e-06 53.1 58 41.4


User provided reference genes

Program Settings