Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G112800 Theobroma cacao HOM05D003669 ORTHO05D012266 9.2e-162 573.5 299 100.0
Duzib150G1422 Durio zibethinus HOM05D003669 ORTHO05D012266 2.0e-140 502.7 292 88.7
Gorai.010G069300 Gossypium raimondii HOM05D003669 ORTHO05D012266 9.0e-125 450.7 292 79.1
Gohir.D06G059500 Gossypium hirsutum HOM05D003669 ORTHO05D012266 4.4e-124 448.4 292 78.8
Gohir.A06G061100 Gossypium hirsutum HOM05D003669 ORTHO05D012266 1.2e-121 440.3 292 77.7
Prupe.7G228700 Prunus persica HOM05D003669 ORTHO05D012266 1.2e-113 413.7 290 74.1
GSVIVG01015409001 Vitis vinifera HOM05D003669 ORTHO05D012266 1.3e-112 410.2 294 72.4
TAR626G0873 Trochodendron aralioides HOM05D003669 ORTHO05D012266 3.9e-112 408.7 295 72.2
TAR383G0054 Trochodendron aralioides HOM05D003669 ORTHO05D012266 6.7e-112 407.9 295 71.5
CANSAT56G2627 Cannabis sativa HOM05D003669 ORTHO05D012266 4.8e-110 401.7 291 71.8
Nn8g39225 Nelumbo nucifera HOM05D003669 ORTHO05D012266 1.1e-109 400.6 295 70.8
Cfa002334 Carpinus fangiana HOM05D003669 ORTHO05D012266 1.8e-109 399.8 290 72.1
CANSAT56G0764 Cannabis sativa HOM05D003669 ORTHO05D012266 4.0e-109 398.7 291 71.8
Atru.chr7.1323 Acer truncatum HOM05D003669 ORTHO05D012266 3.4e-108 395.6 292 71.2
Ciclev10010230m.g Citrus clementina HOM05D003669 ORTHO05D012266 7.6e-108 394.4 291 70.1
CiPaw.04G166000 Carya illinoinensis HOM05D003669 ORTHO05D012266 2.0e-100 369.8 287 66.9
Potri.006G155900 Populus trichocarpa HOM05D003669 ORTHO05D012266 4.2e-98 362.1 292 66.8
Potri.006G159000 Populus trichocarpa HOM05D003669 ORTHO05D012266 4.2e-98 362.1 292 66.8
Rhsim03G0244200 Rhododendron simsii HOM05D003669 ORTHO05D012266 5.3e-93 345.1 297 63.3
QL02p085710 Quercus lobata HOM05D003669 ORTHO05D012266 3.2e-82 309.3 228 71.1
Actinidia09413 Actinidia chinensis HOM05D000198 ORTHO05D012266 2.8e-78 296.2 232 66.4
CSS0047838 Camellia sinensis var. sinensis HOM05D003669 ORTHO05D012266 4.4e-63 245.7 181 69.1
MBI04_g10457_MAGBIO Magnolia biondii HOM05D003669 ORTHO05D012266 2.7e-36 156.8 115 67.0
SEGI_21937 Sequoiadendron giganteum HOM05D003669 ORTHO05D005046 1.8e-24 117.5 302 31.8
Aqoxy3G03503 Aquilegia oxysepala HOM05D003669 ORTHO05D005046 2.2e-22 110.5 302 30.1
FvH4_5g29140 Fragaria vesca HOM05D003669 ORTHO05D005046 8.3e-22 108.6 292 29.8
Thecc.02G339000 Theobroma cacao HOM05D003669 ORTHO05D005046 3.2e-21 106.7 290 30.3
Sabra10G0124200 Salix brachista HOM05D003669 ORTHO05D005046 4.1e-21 106.3 290 29.3
FAN18G1113 Fragaria x ananassa HOM05D003669 ORTHO05D005046 5.4e-21 105.9 292 29.5
Nitab4.5_0000141g0030 Nicotiana tabacum HOM05D003669 ORTHO05D005046 7.1e-21 105.5 290 29.3
Potri.010G163400 Populus trichocarpa HOM05D003669 ORTHO05D005046 7.1e-21 105.5 297 30.0
FAN04G2355 Fragaria x ananassa HOM05D003669 ORTHO05D005046 9.2e-21 105.1 292 29.5
PGR102G2611 Punica granatum HOM05D003669 ORTHO05D005046 1.6e-20 104.4 290 29.0
Glyma.07G227800 Glycine max HOM05D003669 ORTHO05D005046 2.7e-20 103.6 290 29.3
Potri.008G091500 Populus trichocarpa HOM05D003669 ORTHO05D005046 2.7e-20 103.6 299 30.4
FAN08G0960 Fragaria x ananassa HOM05D003669 ORTHO05D005046 4.6e-20 102.8 296 29.1
BcaB03g14707 Brassica carinata HOM05D003669 ORTHO05D005046 7.8e-20 102.1 290 30.3
Nitab4.5_0000720g0060 Nicotiana tabacum HOM05D003669 ORTHO05D005046 7.8e-20 102.1 290 27.2
TPR.G34083 Trifolium pratense HOM05D003669 ORTHO05D005046 7.8e-20 102.1 290 28.6
EL10Ac6g13272 Beta vulgaris HOM05D003669 ORTHO05D005046 1.3e-19 101.3 290 27.6
MBI19_g28315_MAGBIO Magnolia biondii HOM05D003669 ORTHO05D005046 2.3e-19 100.5 292 29.8
Peaxi162Scf00097g00103 Petunia axillaris HOM05D003669 ORTHO05D005046 3.0e-19 100.1 290 27.6
Atru.chr11.1711 Acer truncatum HOM05D003669 ORTHO05D005046 3.9e-19 99.8 301 28.6
CARHR062320 Cardamine hirsuta HOM05D003669 ORTHO05D005046 3.9e-19 99.8 290 30.0
Duzib268G1480 Durio zibethinus HOM05D003669 ORTHO05D005046 3.9e-19 99.8 291 31.3
Ah.03g134650 Amaranthus hybridus HOM05D003669 ORTHO05D005046 5.1e-19 99.4 290 26.6
Ca_23887_v3 Cicer arietinum L. HOM05D003669 ORTHO05D005046 5.1e-19 99.4 290 28.6
Sc11g0002160 Simmondsia chinensis HOM05D003669 ORTHO05D005046 5.1e-19 99.4 286 27.6
RcHm_v2.0_Chr7g0221801 Rosa chinensis HOM05D003669 ORTHO05D005046 6.6e-19 99.0 292 28.4
Duzib248G1252 Durio zibethinus HOM05D003669 ORTHO05D005046 8.6e-19 98.6 290 29.3
Gohir.D02G127500 Gossypium hirsutum HOM05D003669 ORTHO05D005046 8.6e-19 98.6 287 28.6
Nitab4.5_0000391g0150 Nicotiana tabacum HOM05D003669 ORTHO05D005046 8.6e-19 98.6 290 27.2
Solyc05g012870.1 Solanum lycopersicum HOM05D003669 ORTHO05D005046 8.6e-19 98.6 290 28.3
COL.COLO4_27966 Corchorus olitorius HOM05D003669 ORTHO05D005046 1.1e-18 98.2 290 28.6
Gorai.005G143100 Gossypium raimondii HOM05D003669 ORTHO05D005046 1.1e-18 98.2 287 28.6
Medtr4g082350 Medicago truncatula HOM05D003669 ORTHO05D005046 1.1e-18 98.2 290 27.9
CSS0046805 Camellia sinensis var. sinensis HOM05D003669 ORTHO05D005046 1.5e-18 97.8 290 27.6
Oeu041090.1 Olea europaea HOM05D003669 ORTHO05D005046 1.5e-18 97.8 290 26.6
Rhsim12G0133100 Rhododendron simsii HOM05D003669 ORTHO05D005046 1.5e-18 97.8 288 29.5
Aa31LG4G11440 Aethionema arabicum HOM05D003669 ORTHO05D005046 1.9e-18 97.4 289 29.4
Gorai.013G089500 Gossypium raimondii HOM05D003669 ORTHO05D005046 1.9e-18 97.4 291 29.9
Nn3g17339 Nelumbo nucifera HOM05D003669 ORTHO05D005046 1.9e-18 97.4 290 28.3
PGSC0003DMG400026831 Solanum tuberosum HOM05D003669 ORTHO05D005046 1.9e-18 97.4 290 26.6
ATR0730G059 Amborella trichopoda HOM05D003669 ORTHO05D005046 2.5e-18 97.1 291 31.6
AL2G28540 Arabidopsis lyrata HOM05D003669 ORTHO05D005046 2.5e-18 97.1 290 29.7
Thhalv10018794m.g Eutrema salsugineum HOM05D003669 ORTHO05D005046 2.5e-18 97.1 290 29.7
Gohir.D13G078300 Gossypium hirsutum HOM05D003669 ORTHO05D005046 2.5e-18 97.1 291 30.2
C06p40420 Brassica napus HOM05D003669 ORTHO05D005046 3.3e-18 96.7 292 29.8
BolC6t39390H Brassica oleracea HOM05D003669 ORTHO05D005046 3.3e-18 96.7 292 29.8
Migut.L01241 Erythranthe guttata HOM05D003669 ORTHO05D005046 3.3e-18 96.7 292 30.5
CANSAT64G1602 Cannabis sativa HOM05D003669 ORTHO05D005046 4.3e-18 96.3 290 28.3
VMungo0251G2119 Vigna mungo HOM05D003669 ORTHO05D005046 4.3e-18 96.3 290 28.3
AT1G69430 Arabidopsis thaliana HOM05D003669 ORTHO05D005046 5.6e-18 95.9 290 29.3
BolC5t31170H Brassica oleracea HOM05D003669 ORTHO05D005046 5.6e-18 95.9 288 28.5
Gohir.A03G102600 Gossypium hirsutum HOM05D003669 ORTHO05D005046 5.6e-18 95.9 287 28.2
Lj4g0023966 Lotus japonicus HOM05D003669 ORTHO05D005046 5.6e-18 95.9 290 27.6
Lalb_Chr09g0329151 Lupinus albus HOM05D003669 ORTHO05D005046 5.6e-18 95.9 290 27.6
Psat7g135560 Pisum sativum HOM05D003669 ORTHO05D005046 5.6e-18 95.9 290 27.6
CAN.G314.1 Capsicum annuum HOM05D003669 ORTHO05D005046 7.3e-18 95.5 299 26.1
Sabra08G0068500 Salix brachista HOM05D003669 ORTHO05D005046 7.3e-18 95.5 303 29.7
BcaC05g26402 Brassica carinata HOM05D003669 ORTHO05D005046 1.2e-17 94.7 288 28.1
C05p24360 Brassica napus HOM05D003669 ORTHO05D005046 1.2e-17 94.7 288 28.1
Nitab4.5_0028573g0010 Nicotiana tabacum HOM05D003669 ORTHO05D005046 1.2e-17 94.7 290 27.2
A07p35780 Brassica napus HOM05D003669 ORTHO05D005046 1.6e-17 94.4 290 28.3
A09p40060 Brassica napus HOM05D003669 ORTHO05D005046 1.6e-17 94.4 288 27.8
BraA07t31164Z Brassica rapa HOM05D003669 ORTHO05D005046 1.6e-17 94.4 290 28.3
Cc11_g12530 Coffea canephora HOM05D003669 ORTHO05D005046 1.6e-17 94.4 289 27.7
Sopen01g006940 Solanum pennellii HOM05D003669 ORTHO05D005046 1.6e-17 94.4 290 25.9
PGSC0003DMG400028338 Solanum tuberosum HOM05D003669 ORTHO05D005046 1.6e-17 94.4 290 27.6
SGA_v2.0_scaffold16G07737 Striga asiatica HOM05D003669 ORTHO05D005046 1.6e-17 94.4 290 26.9
MSTRG.725 Avicennia marina HOM05D003669 ORTHO05D005046 2.1e-17 94.0 290 27.6
BraA09t39502Z Brassica rapa HOM05D003669 ORTHO05D005046 2.1e-17 94.0 288 27.8
Carub.0002s1603 Capsella rubella HOM05D003669 ORTHO05D005046 2.1e-17 94.0 290 29.0
CiPaw.06G089100 Carya illinoinensis HOM05D003669 ORTHO05D005046 2.1e-17 94.0 293 30.0
Ciclev10033399m.g Citrus clementina HOM05D003669 ORTHO05D005046 2.1e-17 94.0 289 28.4
Duzib251G0808 Durio zibethinus HOM05D003669 ORTHO05D005046 2.1e-17 94.0 290 29.0
Phvul.002G168800 Phaseolus vulgaris HOM05D003669 ORTHO05D005046 2.1e-17 94.0 290 27.2
Prupe.1G280100 Prunus persica HOM05D003669 ORTHO05D005046 2.1e-17 94.0 290 28.3
SEGI_22214 Sequoiadendron giganteum HOM05D003669 ORTHO05D005046 2.1e-17 94.0 306 27.5
THA.LOC104822182 Tarenaya hassleriana HOM05D003669 ORTHO05D005046 2.1e-17 94.0 289 29.4
TWI31G0268 Tripterygium wilfordii HOM05D003669 ORTHO05D005046 2.8e-17 93.6 288 29.5
AL1G39080 Arabidopsis lyrata HOM05D003669 ORTHO05D005046 3.6e-17 93.2 288 28.8
AT1G26650 Arabidopsis thaliana HOM05D003669 ORTHO05D005046 4.7e-17 92.8 290 30.3
Sed0017288 Sechium edule HOM05D003669 ORTHO05D005046 4.7e-17 92.8 290 29.7
Solyc01g010990.2 Solanum lycopersicum HOM05D003669 ORTHO05D005046 4.7e-17 92.8 290 25.5
CSS0031393 Camellia sinensis var. sinensis HOM05D003669 ORTHO05D005046 8.1e-17 92.0 285 28.1
Lj6P783T30 Lonicera japonica HOM05D003669 ORTHO05D005046 8.1e-17 92.0 288 28.8
Nn4g23289 Nelumbo nucifera HOM05D003669 ORTHO05D005046 8.1e-17 92.0 302 26.8
CAN.G964.18 Capsicum annuum HOM05D003669 ORTHO05D005046 1.1e-16 91.7 290 26.6
MD13G1068000 Malus domestica HOM05D003669 ORTHO05D005046 1.8e-16 90.9 292 28.4
PSO063G6284 Papaver somniferum HOM05D003669 ORTHO05D005046 1.8e-16 90.9 289 28.4
Peaxi162Scf00222g00021 Petunia axillaris HOM05D003669 ORTHO05D005046 1.8e-16 90.9 290 26.6
DCAR_023812 Daucus carota HOM05D003669 ORTHO05D005046 3.1e-16 90.1 288 28.5
MSTRG.7776 Avicennia marina HOM05D003669 ORTHO05D005046 4.0e-16 89.7 290 27.9
Carub.0001s2438 Capsella rubella HOM05D003669 ORTHO05D005046 4.0e-16 89.7 290 30.0
CARHR025320 Cardamine hirsuta HOM05D003669 ORTHO05D005046 4.0e-16 89.7 288 27.1
ClCG05G023980 Citrullus lanatus HOM05D003669 ORTHO05D005046 4.0e-16 89.7 292 30.5
ECA233G0305 Erigeron canadensis HOM05D003669 ORTHO05D005046 4.0e-16 89.7 301 26.2
Hma1.2p1_0354F.1_g133780 Hydrangea macrophylla HOM05D003669 ORTHO05D005046 4.0e-16 89.7 290 26.6
Actinidia33230 Actinidia chinensis HOM05D003669 ORTHO05D005046 5.2e-16 89.4 284 28.9
MD16G1066800 Malus domestica HOM05D003669 ORTHO05D005046 5.2e-16 89.4 290 26.6
Manes.01G032000 Manihot esculenta HOM05D003669 ORTHO05D005046 5.2e-16 89.4 290 27.9
Thhalv10008119m.g Eutrema salsugineum HOM05D003669 ORTHO05D005046 6.8e-16 89.0 294 29.6
SpUn0008_0120 Schrenkiella parvula HOM05D003669 ORTHO05D005046 6.8e-16 89.0 290 29.0
SpUn0019_0020 Schrenkiella parvula HOM05D003669 ORTHO05D005046 6.8e-16 89.0 290 29.0
SpUn0296_0010 Schrenkiella parvula HOM05D003669 ORTHO05D005046 6.8e-16 89.0 290 29.0
Aa31LG7G8440 Aethionema arabicum HOM05D003669 ORTHO05D005046 8.9e-16 88.6 292 27.7
Glyma.20G030800 Glycine max HOM05D003669 ORTHO05D005046 1.2e-15 88.2 290 27.2
PSO063G3148 Papaver somniferum HOM05D003669 ORTHO05D005046 1.2e-15 88.2 289 27.7
SalBow2G2159 Salvia bowleyana HOM05D003669 ORTHO05D005046 1.2e-15 88.2 290 26.6
SalBow2G3632 Salvia bowleyana HOM05D003669 ORTHO05D005046 1.2e-15 88.2 290 26.6
HanXRQChr08g0211271 Helianthus annuus HOM05D003669 ORTHO05D005046 1.5e-15 87.8 301 26.9
QL03p069846 Quercus lobata HOM05D003669 ORTHO05D005046 2.6e-15 87.0 289 27.3
THA.LOC104822905 Tarenaya hassleriana HOM05D003669 ORTHO05D005046 3.4e-15 86.7 303 28.4
MELO3C012128.2 Cucumis melo HOM05D003669 ORTHO05D005046 7.6e-15 85.5 292 30.1
Lj3P1033T30 Lonicera japonica HOM05D003669 ORTHO05D005046 9.9e-15 85.1 286 26.2
TAR006G0001 Trochodendron aralioides HOM05D003669 ORTHO05D005046 9.9e-15 85.1 214 31.8
Cpa.g.sc1.72 Carica papaya HOM05D003669 ORTHO05D005046 1.3e-14 84.7 297 29.3
CiPaw.05G129400 Carya illinoinensis HOM05D003669 ORTHO05D005046 1.3e-14 84.7 214 30.4
CsaV3_5G033070 Cucumis sativus L. HOM05D003669 ORTHO05D005046 1.3e-14 84.7 292 30.5
TWI75G1484 Tripterygium wilfordii HOM05D003669 ORTHO05D005046 1.3e-14 84.7 287 28.6
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 8.4e-14 82.0 271 28.4
THA.LOC104808637 Tarenaya hassleriana HOM05D003669 ORTHO05D005046 8.4e-14 82.0 292 27.7
AagrBONN_evm.TU.Sc2ySwM_362.271 Anthoceros agrestis HOM05D003669 ORTHO05D005046 1.1e-13 81.6 302 27.2
Haze_11953 Corylus avellana HOM05D003669 ORTHO05D005046 1.1e-13 81.6 290 26.2
Cfa008924 Carpinus fangiana HOM05D003669 ORTHO05D005046 1.4e-13 81.3 290 26.2
HPP92_023618 Vanilla planifolia HOM05D003669 ORTHO05D005046 3.2e-13 80.1 292 30.1
PSO478G5197 Papaver somniferum HOM05D003669 ORTHO05D005046 5.4e-13 79.3 301 26.6
unitig_8.g3190 Utricularia gibba HOM05D003669 ORTHO05D005046 1.2e-12 78.2 286 28.0
FAN13G0674 Fragaria x ananassa HOM05D003669 ORTHO05D005046 1.6e-12 77.8 271 27.3
Os07g0595900 Oryza sativa ssp. japonica HOM05D003669 ORTHO05D005046 2.1e-12 77.4 228 31.6
Dinv16692 Davidia involucrata HOM05D003669 ORTHO05D005046 1.3e-11 74.7 248 27.8
Sopen05g007700 Solanum pennellii HOM05D003669 ORTHO05D005046 2.3e-11 73.9 266 27.4
unitig_22.g6502 Utricularia gibba HOM05D003669 ORTHO05D005046 2.3e-11 73.9 291 26.8
SEGI_35808 Sequoiadendron giganteum HOM05D003669 ORTHO05D005046 3.9e-11 73.2 192 30.2
Actinidia31958 Actinidia chinensis HOM05D003669 ORTHO05D005046 2.5e-10 70.5 250 28.4
MBI19_g43436_MAGBIO Magnolia biondii HOM05D004089 ORTHO05D004687 3.3e-10 70.1 299 28.1
GSVIVG01012487001 Vitis vinifera HOM05D003669 ORTHO05D005046 3.3e-10 70.1 164 30.5
Eucgr.B03191 Eucalyptus grandis HOM05D003669 ORTHO05D005046 4.3e-10 69.7 254 25.2
AUR62005854 Chenopodium quinoa HOM05D003669 ORTHO05D005046 9.6e-10 68.6 290 23.8
CDE04G3171 Ceratophyllum demersum HOM05D003669 ORTHO05D005046 1.6e-09 67.8 281 27.4
arahy.Tifrunner.gnm1.ann1.JX1FK0 Arachis hypogaea HOM05D004089 ORTHO05D004687 2.1e-09 67.4 305 26.6
CDE02G4737 Ceratophyllum demersum HOM05D003669 ORTHO05D005046 2.8e-09 67.0 114 33.3
AUR62032846 Chenopodium quinoa HOM05D003669 ORTHO05D005046 6.2e-09 65.9 290 23.4
Mapoly0036s0082 Marchantia polymorpha HOM05D003669 ORTHO05D005046 2.4e-08 63.9 296 24.3
unitig_749.g13213 Utricularia gibba HOM05D003669 ORTHO05D005046 3.1e-08 63.5 293 25.3
unitig_26.g10293 Utricularia gibba HOM05D003669 ORTHO05D005046 4.0e-08 63.2 297 26.3
HanXRQChr12g0379211 Helianthus annuus HOM05D003669 ORTHO05D005046 1.2e-07 61.6 292 23.6
Pp3c8_2830 Physcomitrium patens HOM05D003669 ORTHO05D005046 2.0e-07 60.8 210 26.2
COL.COLO4_35751 Corchorus olitorius HOM05D001062 ORTHO05D000884 5.8e-07 59.3 295 25.8
SMO353G0408 Selaginella moellendorffii HOM05D003669 ORTHO05D005046 7.6e-07 58.9 305 22.3
TAR381G0119 Trochodendron aralioides HOM05D003669 ORTHO05D005046 1.3e-06 58.2 129 34.1
TAR629G2685 Trochodendron aralioides HOM05D003669 ORTHO05D005046 1.7e-06 57.8 203 26.6
Nn3g16144 Nelumbo nucifera HOM05D001062 ORTHO05D000884 2.2e-06 57.4 289 26.0
Nn3g17062 Nelumbo nucifera HOM05D001062 ORTHO05D000884 2.2e-06 57.4 289 26.0
Nn5g28536 Nelumbo nucifera HOM05D001062 ORTHO05D000884 2.2e-06 57.4 306 26.8
HPP92_023699 Vanilla planifolia HOM05D003669 ORTHO05D005046 2.2e-06 57.4 227 29.1
Actinidia15174 Actinidia chinensis HOM05D001062 ORTHO05D000884 3.8e-06 56.6 304 25.7
C07p44990 Brassica napus HOM05D004089 ORTHO05D004687 3.8e-06 56.6 225 25.8
MELO3C002001.2 Cucumis melo HOM05D004089 ORTHO05D004687 3.8e-06 56.6 304 23.7
CsaV3_1G005700 Cucumis sativus L. HOM05D004089 ORTHO05D004687 4.9e-06 56.2 304 23.0
MD14G1205500 Malus domestica HOM05D004089 ORTHO05D004687 4.9e-06 56.2 298 25.8
Mapoly0036s0117 Marchantia polymorpha HOM05D001062 ORTHO05D000884 6.4e-06 55.8 199 26.6
Pp3c4_4390 Physcomitrium patens HOM05D003669 ORTHO05D005046 6.4e-06 55.8 316 25.0


User provided reference genes

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