Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G111000 Theobroma cacao HOM05D007950 ORTHO05D009951 7.9e-32 139.8 70 100.0
Gorai.010G070600 Gossypium raimondii HOM05D007950 ORTHO05D009951 3.8e-26 120.9 68 86.8
GSVIVG01015395001 Vitis vinifera HOM05D007950 ORTHO05D009951 5.0e-26 120.6 70 82.9
Gohir.D06G060600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.1e-25 119.4 68 85.3
Gohir.A06G062300 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.4e-25 119.0 68 83.8
RcHm_v2.0_Chr2g0090511 Rosa chinensis HOM05D007950 ORTHO05D009951 1.9e-25 118.6 70 82.9
CSS0015996 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 4.2e-25 117.5 68 85.3
MD15G1186200 Malus domestica HOM05D007950 ORTHO05D009951 4.2e-25 117.5 70 81.4
FvH4_1g04841 Fragaria vesca HOM05D007950 ORTHO05D009951 9.4e-25 116.3 70 78.6
FAN19G2230 Fragaria x ananassa HOM05D007950 ORTHO05D009951 9.4e-25 116.3 70 78.6
FAN26G3407 Fragaria x ananassa HOM05D007950 ORTHO05D009951 1.2e-24 115.9 70 78.6
MD02G1047700 Malus domestica HOM05D007950 ORTHO05D009951 1.2e-24 115.9 70 80.0
QL02p085472 Quercus lobata HOM05D007950 ORTHO05D009951 2.1e-24 115.2 69 76.8
Manes.16G116501 Manihot esculenta HOM05D007950 ORTHO05D009951 4.7e-24 114.0 70 77.1
FAN23G0617 Fragaria x ananassa HOM05D007950 ORTHO05D009951 6.1e-24 113.6 70 77.1
Eucgr.C01044 Eucalyptus grandis HOM05D007950 ORTHO05D009951 2.3e-23 111.7 70 74.3
vmacro20696 Vaccinium macrocarpon HOM05D007950 ORTHO05D009951 3.9e-23 110.9 70 72.9
ClCG06G008510 Citrullus lanatus HOM05D007950 ORTHO05D009951 3.3e-22 107.8 70 70.0
Actinidia20354 Actinidia chinensis HOM05D007950 ORTHO05D009951 7.4e-22 106.7 68 72.1
Ciclev10010772m.g Citrus clementina HOM05D007950 ORTHO05D009951 9.7e-22 106.3 70 71.4
CsaV3_1G030490 Cucumis sativus L. HOM05D007950 ORTHO05D009951 9.7e-22 106.3 68 69.1
Prupe.7G230500 Prunus persica HOM05D007950 ORTHO05D009951 1.3e-21 105.9 61 83.6
TAR636G2963 Trochodendron aralioides HOM05D007950 ORTHO05D009951 1.3e-21 105.9 68 75.0
CiPaw.03G232500 Carya illinoinensis HOM05D007950 ORTHO05D009951 3.7e-21 104.4 69 73.9
CiPaw.04G164400 Carya illinoinensis HOM05D007950 ORTHO05D009951 2.4e-20 101.7 61 80.3
QL05p023317 Quercus lobata HOM05D007950 ORTHO05D009951 4.1e-20 100.9 69 66.7
arahy.Tifrunner.gnm1.ann1.7G47EE Arachis hypogaea HOM05D007950 ORTHO05D009951 5.3e-20 100.5 70 71.4
arahy.Tifrunner.gnm1.ann1.U6R6BR Arachis hypogaea HOM05D007950 ORTHO05D009951 5.3e-20 100.5 70 71.4
Nn8g39199 Nelumbo nucifera HOM05D007950 ORTHO05D009951 1.5e-19 99.0 70 68.6
Phvul.003G020900 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 1.5e-19 99.0 70 68.6
Psat1g042280 Pisum sativum HOM05D007950 ORTHO05D009951 2.6e-19 98.2 70 71.4
Thecc.06G089600 Theobroma cacao HOM05D007950 ORTHO05D009951 3.4e-19 97.8 68 70.6
CiPaw.02G150700 Carya illinoinensis HOM05D007950 ORTHO05D009951 1.0e-18 96.3 68 69.1
Potri.001G181701 Populus trichocarpa HOM05D007950 ORTHO05D009951 1.0e-18 96.3 67 68.7
PGR102G0372 Punica granatum HOM05D007950 ORTHO05D009951 2.2e-18 95.1 70 60.0
CSS0048253 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 1.1e-17 92.8 67 68.7
CSS0032282 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 1.9e-17 92.0 67 68.7
Manes.03G020101 Manihot esculenta HOM05D007950 ORTHO05D009951 1.9e-17 92.0 70 67.1
Gohir.D03G063400 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.2e-17 91.3 70 62.9
Gorai.002G059800 Gossypium raimondii HOM05D007950 ORTHO05D009951 3.2e-17 91.3 70 62.9
Medtr6g086645 Medicago truncatula HOM05D007950 ORTHO05D009951 7.2e-17 90.1 68 67.6
TPR.G35274 Trifolium pratense HOM05D007950 ORTHO05D009951 9.4e-17 89.7 66 66.7
Gohir.1Z049586 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.2e-16 89.4 70 61.4
Nn2g11757 Nelumbo nucifera HOM05D007950 ORTHO05D009951 1.2e-16 89.4 70 58.6
Gohir.D05G129500 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.6e-16 89.0 68 64.7
Sc10g0007380 Simmondsia chinensis HOM05D007950 ORTHO05D009951 2.1e-16 88.6 68 61.8
Gohir.A05G130600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 4.7e-16 87.4 68 63.2
Glyma.09G123700 Glycine max HOM05D007950 ORTHO05D009951 1.4e-15 85.9 70 65.7
Eucgr.J02984 Eucalyptus grandis HOM05D007950 ORTHO05D009951 5.2e-15 84.0 60 61.7
Lj3g0016273 Lotus japonicus HOM05D007950 ORTHO05D009951 1.5e-14 82.4 70 55.7
Manes.11G045700 Manihot esculenta HOM05D007950 ORTHO05D009951 2.6e-14 81.6 68 60.3
Medtr4g012610 Medicago truncatula HOM05D007950 ORTHO05D009951 3.3e-14 81.3 70 55.7
ATR0980G014 Amborella trichopoda HOM05D007950 ORTHO05D009951 7.4e-14 80.1 70 55.7
Cc06_g09630 Coffea canephora HOM05D007950 ORTHO05D009951 7.4e-14 80.1 61 63.9
Potri.003G054001 Populus trichocarpa HOM05D007950 ORTHO05D009951 1.7e-13 79.0 67 59.7
Haze_16407 Corylus avellana HOM05D007950 ORTHO05D009951 2.2e-13 78.6 70 55.7
Haze_16408 Corylus avellana HOM05D007950 ORTHO05D009951 2.2e-13 78.6 70 55.7
Prupe.3G070100 Prunus persica HOM05D007950 ORTHO05D009951 3.7e-13 77.8 74 64.9
TPR.G24171 Trifolium pratense HOM05D007950 ORTHO05D009951 3.7e-13 77.8 66 56.1
Psat7g251240 Pisum sativum HOM05D007950 ORTHO05D009951 6.3e-13 77.0 70 51.4
Sc08g0007460 Simmondsia chinensis HOM05D007950 ORTHO05D009951 6.3e-13 77.0 68 55.9
Lalb_Chr04g0262731 Lupinus albus HOM05D007950 ORTHO05D009951 8.2e-13 76.6 70 51.4
Medtr4g012580 Medicago truncatula HOM05D007950 ORTHO05D009951 8.2e-13 76.6 66 54.5
CDE06G0019 Ceratophyllum demersum HOM05D007950 ORTHO05D009951 5.3e-12 73.9 67 52.2
SalBow2G2396 Salvia bowleyana HOM05D007950 ORTHO05D009951 5.3e-12 73.9 53 60.4
Glyma.08G206200 Glycine max HOM05D007950 ORTHO05D009951 9.1e-12 73.2 66 53.0
Migut.D01581 Erythranthe guttata HOM05D007950 ORTHO05D009951 4.5e-11 70.9 65 47.7
Dinv36624 Davidia involucrata HOM05D007950 ORTHO05D009951 5.9e-11 70.5 68 55.9
FAN05G0591 Fragaria x ananassa HOM05D007950 ORTHO05D009951 1.0e-10 69.7 71 50.7
Cc04_g03310 Coffea canephora HOM05D007950 ORTHO05D009951 1.3e-10 69.3 68 50.0
FAN14G2438 Fragaria x ananassa HOM05D007950 ORTHO05D009951 2.2e-10 68.6 71 50.7
Glyma.07G005901 Glycine max HOM05D000325 ORTHO05D002025 2.2e-10 68.6 65 52.3
arahy.Tifrunner.gnm1.ann1.6Z76EK Arachis hypogaea HOM05D007950 ORTHO05D009951 3.8e-10 67.8 72 51.4
Lsat_1_v5_gn_5_103401 Lactuca sativa HOM05D007950 ORTHO05D009951 3.8e-10 67.8 70 50.0
Phvul.010G150100 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 2.5e-09 65.1 70 44.3
TPR.G8534 Trifolium pratense HOM05D007950 ORTHO05D009951 2.5e-09 65.1 66 47.0
Sed0000041 Sechium edule HOM05D007950 ORTHO05D009951 6.1e-08 60.5 60 45.0
Medtr6g086730 Medicago truncatula HOM05D007950 ORTHO05D009951 1.0e-07 59.7 50 62.0
HanXRQChr09g0275201 Helianthus annuus HOM05D007950 ORTHO05D009951 5.2e-07 57.4 74 35.1
Thhalv10012203m.g Eutrema salsugineum HOM05D007950 ORTHO05D009951 3.3e-06 54.7 68 41.2


User provided reference genes

Program Settings