Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G109100 Theobroma cacao HOM05D004541 ORTHO05D006163 0.0e+00 1643.2 805 100.0
COL.COLO4_34849 Corchorus olitorius HOM05D004541 ORTHO05D006163 0.0e+00 1509.2 763 95.0
Gohir.A08G241500 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1505.0 805 90.9
Duzib187G1831 Durio zibethinus HOM05D004541 ORTHO05D006163 0.0e+00 1497.6 763 94.5
Gohir.D08G262300 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1488.4 805 90.6
Gohir.A05G023600 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1466.1 763 91.1
Gorai.004G280300 Gossypium raimondii HOM05D004541 ORTHO05D006163 0.0e+00 1461.0 763 91.9
Gorai.009G025200 Gossypium raimondii HOM05D004541 ORTHO05D006163 0.0e+00 1459.1 763 91.1
Manes.16G115100 Manihot esculenta HOM05D004541 ORTHO05D006163 0.0e+00 1427.9 764 89.8
Duzib168G0462 Durio zibethinus HOM05D004541 ORTHO05D006163 0.0e+00 1422.5 722 94.2
Gohir.D05G025100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1417.1 763 89.3
Glyma.09G191400 Glycine max HOM05D004541 ORTHO05D006163 0.0e+00 1403.3 790 85.8
Eucgr.C03820 Eucalyptus grandis HOM05D004541 ORTHO05D006163 0.0e+00 1397.5 762 87.0
Prupe.7G232300 Prunus persica HOM05D004541 ORTHO05D006163 0.0e+00 1394.4 764 87.2
Actinidia07413 Actinidia chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1393.3 764 86.8
CANSAT56G4378 Cannabis sativa HOM05D004541 ORTHO05D006163 0.0e+00 1392.1 764 86.9
GSVIVG01015382001 Vitis vinifera HOM05D004541 ORTHO05D006163 0.0e+00 1391.7 764 87.3
Atru.chr7.1362 Acer truncatum HOM05D004541 ORTHO05D006163 0.0e+00 1390.2 764 87.6
CANSAT56G2738 Cannabis sativa HOM05D004541 ORTHO05D006163 0.0e+00 1390.2 764 86.8
CiPaw.03G231000 Carya illinoinensis HOM05D004541 ORTHO05D006163 0.0e+00 1386.3 764 86.9
FvH4_1g04670 Fragaria vesca HOM05D004541 ORTHO05D006163 0.0e+00 1382.5 789 84.0
Dinv41612 Davidia involucrata HOM05D004541 ORTHO05D006163 0.0e+00 1381.3 764 87.6
Potri.018G081400 Populus trichocarpa HOM05D004541 ORTHO05D006163 0.0e+00 1381.3 764 87.3
CSS0034093 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 0.0e+00 1379.8 764 86.3
TAR383G1084 Trochodendron aralioides HOM05D004541 ORTHO05D006163 0.0e+00 1374.4 771 85.9
CsaV3_1G024300 Cucumis sativus L. HOM05D004541 ORTHO05D006163 0.0e+00 1373.2 776 84.8
Ciclev10007326m.g Citrus clementina HOM05D004541 ORTHO05D006163 0.0e+00 1372.1 764 86.0
Ca_20226_v3 Cicer arietinum L. HOM05D004541 ORTHO05D006163 0.0e+00 1370.9 764 86.5
Gohir.D05G025033 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1370.1 763 87.0
Phvul.004G164500 Phaseolus vulgaris HOM05D004541 ORTHO05D006163 0.0e+00 1370.1 764 84.8
Glyma.07G085500 Glycine max HOM05D004541 ORTHO05D006163 0.0e+00 1369.8 765 86.3
vmacro06222 Vaccinium macrocarpon HOM05D004541 ORTHO05D006163 0.0e+00 1368.2 764 85.6
FAN23G1653 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1367.4 764 85.2
ClCG06G008600 Citrullus lanatus HOM05D004541 ORTHO05D006163 0.0e+00 1367.1 764 85.6
QL02p040000 Quercus lobata HOM05D004541 ORTHO05D006163 0.0e+00 1365.1 763 86.4
MD15G1183900 Malus domestica HOM05D004541 ORTHO05D006163 0.0e+00 1360.5 764 85.3
VMungo0464G1118 Vigna mungo HOM05D004541 ORTHO05D006163 0.0e+00 1359.0 763 84.5
Sabra18G0068500 Salix brachista HOM05D004541 ORTHO05D006163 0.0e+00 1358.2 734 88.1
Lalb_Chr09g0331191 Lupinus albus HOM05D004541 ORTHO05D006163 0.0e+00 1356.7 764 84.9
RcHm_v2.0_Chr2g0090281 Rosa chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1356.7 764 84.8
Medtr6g087520 Medicago truncatula HOM05D004541 ORTHO05D006163 0.0e+00 1355.9 765 85.5
MELO3C025349.2 Cucumis melo HOM05D004541 ORTHO05D006163 0.0e+00 1353.2 764 85.1
CSS0021602 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 0.0e+00 1351.7 733 86.9
TWI34G1287 Tripterygium wilfordii HOM05D004541 ORTHO05D006163 0.0e+00 1347.8 763 84.4
TPR.G10041 Trifolium pratense HOM05D004541 ORTHO05D006163 0.0e+00 1346.6 765 85.5
Psat1g043400 Pisum sativum HOM05D004541 ORTHO05D006163 0.0e+00 1346.3 765 85.2
Lj2g0016785 Lotus japonicus HOM05D004541 ORTHO05D006163 0.0e+00 1345.1 763 84.5
Lj7A652G69 Lonicera japonica HOM05D004541 ORTHO05D006163 0.0e+00 1343.2 762 84.0
Sed0019002 Sechium edule HOM05D004541 ORTHO05D006163 0.0e+00 1341.3 764 84.7
Nitab4.5_0007565g0030 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1339.7 766 83.6
Cc06_g09760 Coffea canephora HOM05D004541 ORTHO05D006163 0.0e+00 1336.6 762 83.6
CAN.G608.21 Capsicum annuum HOM05D004541 ORTHO05D006163 0.0e+00 1335.5 763 83.0
FAN19G1993 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1334.3 734 85.8
THA.LOC104804980 Tarenaya hassleriana HOM05D004541 ORTHO05D006163 0.0e+00 1334.3 765 83.7
Solyc09g007300.3 Solanum lycopersicum HOM05D004541 ORTHO05D006163 0.0e+00 1327.4 767 82.7
Rhsim03G0241000 Rhododendron simsii HOM05D004541 ORTHO05D006163 0.0e+00 1323.9 756 83.6
Aqoxy7G01635 Aquilegia oxysepala HOM05D004541 ORTHO05D006163 0.0e+00 1321.2 768 82.9
HanXRQChr10g0318611 Helianthus annuus HOM05D004541 ORTHO05D006163 0.0e+00 1320.8 765 81.3
Migut.J01157 Erythranthe guttata HOM05D004541 ORTHO05D006163 0.0e+00 1318.9 762 82.4
PGR102G1372 Punica granatum HOM05D004541 ORTHO05D006163 0.0e+00 1318.5 764 82.6
Hund26211 Selenicereus undatus HOM05D004541 ORTHO05D006163 0.0e+00 1318.1 764 81.5
Thhalv10012541m.g Eutrema salsugineum HOM05D004541 ORTHO05D006163 0.0e+00 1316.6 762 82.5
PSO210G2419 Papaver somniferum HOM05D004541 ORTHO05D006163 0.0e+00 1316.6 772 81.1
Oeu018244.1 Olea europaea HOM05D004541 ORTHO05D006163 0.0e+00 1315.8 765 82.4
Carub.0006s1801 Capsella rubella HOM05D004541 ORTHO05D006163 0.0e+00 1315.4 765 82.0
Sp6g24730 Schrenkiella parvula HOM05D004541 ORTHO05D006163 0.0e+00 1314.7 763 82.2
ECA234G1988 Erigeron canadensis HOM05D004541 ORTHO05D006163 0.0e+00 1313.9 764 81.2
BolC3t13584H Brassica oleracea HOM05D004541 ORTHO05D006163 0.0e+00 1311.2 763 82.0
A03p09570 Brassica napus HOM05D004541 ORTHO05D006163 0.0e+00 1309.3 763 82.0
C03p11140 Brassica napus HOM05D004541 ORTHO05D006163 0.0e+00 1307.4 764 81.8
PSO210G5975 Papaver somniferum HOM05D004541 ORTHO05D006163 0.0e+00 1307.0 772 80.3
AL6G31170 Arabidopsis lyrata HOM05D004541 ORTHO05D006163 0.0e+00 1303.9 762 81.8
AT5G19660 Arabidopsis thaliana HOM05D004541 ORTHO05D006163 0.0e+00 1303.9 767 81.2
Aa31LG3G3200 Aethionema arabicum HOM05D004541 ORTHO05D006163 0.0e+00 1298.1 750 82.4
CARHR193250 Cardamine hirsuta HOM05D004541 ORTHO05D006163 0.0e+00 1298.1 762 81.8
BraA03t10274Z Brassica rapa HOM05D004541 ORTHO05D006163 0.0e+00 1294.6 786 79.5
unitig_8.g3279 Utricularia gibba HOM05D004541 ORTHO05D006163 0.0e+00 1292.7 759 80.1
AUR62010981 Chenopodium quinoa HOM05D004541 ORTHO05D006163 0.0e+00 1291.6 735 81.9
DCAR_024689 Daucus carota HOM05D004541 ORTHO05D006163 0.0e+00 1289.2 736 82.5
MD02G1045500 Malus domestica HOM05D004541 ORTHO05D006163 0.0e+00 1285.8 690 87.8
BcaB01g04837 Brassica carinata HOM05D004541 ORTHO05D006163 0.0e+00 1285.4 764 81.5
EL10Ac8g18481 Beta vulgaris HOM05D004541 ORTHO05D006163 0.0e+00 1280.8 735 81.9
Lsat_1_v5_gn_5_103081 Lactuca sativa HOM05D004541 ORTHO05D006163 0.0e+00 1279.6 768 79.9
Peaxi162Scf00005g04811 Petunia axillaris HOM05D004541 ORTHO05D006163 0.0e+00 1277.7 763 81.0
Sc18g0001290 Simmondsia chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1273.8 714 83.6
MBI01_g28040_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 0.0e+00 1273.5 742 81.5
FAN26G2455 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1273.1 714 84.9
SGA_v2.0_scaffold17G08177 Striga asiatica HOM05D004541 ORTHO05D006163 0.0e+00 1263.4 714 83.9
Nn8g39153 Nelumbo nucifera HOM05D004541 ORTHO05D006163 0.0e+00 1260.4 776 77.6
Nitab4.5_0001142g0040 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1253.4 713 84.4
AUR62021490 Chenopodium quinoa HOM05D004541 ORTHO05D006163 0.0e+00 1250.3 764 78.3
SHI02736 Sapria himalayana HOM05D004541 ORTHO05D006163 0.0e+00 1246.9 761 78.3
VMungo0464G1847 Vigna mungo HOM05D004541 ORTHO05D006163 0.0e+00 1242.3 763 78.8
Nitab4.5_0000754g0130 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1236.1 732 79.6
Cpa.g.sc23.98 Carica papaya HOM05D004541 ORTHO05D006163 0.0e+00 1224.5 785 76.8
Dinv36641 Davidia involucrata HOM05D004541 ORTHO05D006163 0.0e+00 1223.0 715 83.4
CDE05G1732 Ceratophyllum demersum HOM05D004541 ORTHO05D006163 0.0e+00 1198.0 768 74.0
ATR0315G070 Amborella trichopoda HOM05D004541 ORTHO05D006163 0.0e+00 1191.0 770 74.9
HPP92_003938 Vanilla planifolia HOM05D004541 ORTHO05D006163 0.0e+00 1178.7 701 79.5
Ah.14g082120 Amaranthus hybridus HOM05D004541 ORTHO05D006163 0.0e+00 1167.9 714 78.4
Haze_25754 Corylus avellana HOM05D004541 ORTHO05D006163 0.0e+00 1158.3 655 85.2
CAN.G933.11 Capsicum annuum HOM05D004541 ORTHO05D006163 0.0e+00 1151.3 763 73.7
Lsat_1_v5_gn_8_105101 Lactuca sativa HOM05D004541 ORTHO05D006163 0.0e+00 1118.6 714 73.5
Sopen00g009260 Solanum pennellii HOM05D004541 ORTHO05D006163 0.0e+00 1090.9 650 80.3
Mapoly0155s0018 Marchantia polymorpha HOM05D004541 ORTHO05D006163 6.2e-306 1053.9 843 62.8
SMO347G0168 Selaginella moellendorffii HOM05D004541 ORTHO05D006163 5.0e-287 991.1 645 70.5
Pp3c3_30280 Physcomitrium patens HOM05D004541 ORTHO05D006163 2.4e-281 972.2 770 63.5
Os06g0163500 Oryza sativa ssp. japonica HOM05D004541 ORTHO05D006163 1.1e-278 963.4 683 66.2
CSS0043571 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 1.8e-273 946.0 664 71.5
AagrBONN_evm.TU.Sc2ySwM_344.4490 Anthoceros agrestis HOM05D004541 ORTHO05D006163 2.4e-257 892.5 534 76.8
SEGI_28317 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 7.0e-249 864.4 573 71.0
Nitab4.5_0006929g0020 Nicotiana tabacum HOM05D004541 ORTHO05D006163 7.7e-248 860.9 677 64.5
Zm00001eb375700 Zea mays HOM05D004541 ORTHO05D006163 3.6e-237 825.5 593 64.9
SEGI_41546 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 1.3e-234 817.0 461 82.6
MCO08G100 Micromonas commoda HOM05D004541 ORTHO05D006163 1.9e-222 776.5 677 56.6
Cre14.g628800 Chlamydomonas reinhardtii HOM05D004541 ORTHO05D006163 2.8e-213 746.1 660 55.5
PRCOL_00005929 Prasinoderma coloniale HOM05D004541 ORTHO05D006163 2.3e-212 743.0 644 55.6
PGSC0003DMG400017594 Solanum tuberosum HOM05D004541 ORTHO05D006163 1.4e-204 717.2 528 67.8
CAN.G268.4 Capsicum annuum HOM05D004541 ORTHO05D006163 6.0e-200 701.8 512 70.5
Medtr6g086780 Medicago truncatula HOM05D004541 ORTHO05D006163 7.6e-195 684.9 490 70.0
Gorai.006G096000 Gossypium raimondii HOM05D004541 ORTHO05D006163 1.8e-87 328.2 168 95.2
Gohir.A08G250201 Gossypium hirsutum HOM05D004541 ORTHO05D006163 7.1e-84 316.2 158 97.5
Gohir.D07G157100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 7.1e-84 316.2 158 97.5
Gohir.D09G033000 Gossypium hirsutum HOM05D004541 ORTHO05D006163 7.1e-84 316.2 158 97.5
CBR_g30873 Chara braunii HOM05D004541 ORTHO05D000800 1.2e-83 315.5 172 88.4
Gohir.A06G119402 Gossypium hirsutum HOM05D004541 ORTHO05D006163 2.1e-83 314.7 158 96.8
Gohir.A12G025200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 2.1e-83 314.7 158 96.8
Gohir.A10G147200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 6.0e-83 313.2 158 96.8
Gohir.D04G083366 Gossypium hirsutum HOM05D004541 ORTHO05D006163 7.3e-81 306.2 154 97.4
Nitab4.5_0000754g0080 Nicotiana tabacum HOM05D004541 ORTHO05D006163 2.8e-80 304.3 629 35.1
SGA_v2.0_scaffold176G39378 Striga asiatica HOM05D004541 ORTHO05D006163 9.9e-70 269.2 211 63.5
Sopen00g009180 Solanum pennellii HOM05D004541 ORTHO05D006163 7.7e-54 216.5 103 98.1
MBI04_g39576_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 2.8e-48 198.0 124 78.2
BolC9t58517H Brassica oleracea HOM05D004541 ORTHO05D006163 8.2e-48 196.4 144 67.4
CBR_g30877 Chara braunii HOM05D004541 ORTHO05D000002 4.1e-47 194.1 184 51.6
C09p56520 Brassica napus HOM05D004541 ORTHO05D006163 3.0e-42 177.9 130 68.5
Haze_25737 Corylus avellana HOM05D004541 ORTHO05D006163 2.0e-41 175.3 149 63.8
BcaC04g19361 Brassica carinata HOM05D002433 ORTHO05D003234 3.1e-39 167.9 126 66.7
SEGI_08862 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 1.1e-36 159.5 237 40.9
CBR_g30889 Chara braunii HOM05D001523 ORTHO05D000184 1.0e-34 152.9 152 49.3
Lsat_1_v5_gn_5_96741 Lactuca sativa HOM05D004541 ORTHO05D006163 5.2e-34 150.6 96 77.1
Haze_25735 Corylus avellana HOM05D004541 ORTHO05D006163 4.1e-31 141.0 86 75.6
CSS0008653 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 3.5e-30 137.9 73 87.7
CSS0038393 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 1.0e-29 136.3 73 86.3
CSS0024771 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D001797 2.2e-29 135.2 76 84.2
Actinidia32680 Actinidia chinensis HOM05D004541 ORTHO05D006163 1.2e-25 122.9 69 87.0
CSS0002864 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 7.5e-25 120.2 57 98.2
Ah.14g082140 Amaranthus hybridus HOM05D004541 ORTHO05D006163 3.5e-14 84.7 40 97.5
Lj3g0016708 Lotus japonicus HOM05D004541 ORTHO05D006163 1.7e-13 82.4 40 95.0
Aa31LG3G3160 Aethionema arabicum HOM05D004541 ORTHO05D058835 1.5e-09 69.3 163 33.7
CBR_g30886 Chara braunii HOM05D000019 ORTHO05D000353 2.6e-09 68.6 34 79.4
Pp3s169_40 Physcomitrium patens HOM05D004541 ORTHO05D012764 3.4e-09 68.2 148 31.8
Haze_15385 Corylus avellana HOM05D000015 ORTHO05D000734 7.8e-06 57.0 82 39.0


User provided reference genes

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