Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 7.4e-38 160.2 92 100.0
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 5.9e-27 124.0 92 77.2
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 6.5e-26 120.6 92 76.1
Gorai.001G006300 Gossypium raimondii HOM05D007491 ORTHO05D009489 1.8e-20 102.4 92 69.6
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 2.7e-19 98.6 98 63.3
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 5.5e-17 90.9 100 63.0
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 1.2e-16 89.7 101 58.4
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 1.6e-16 89.4 95 67.4
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 8.0e-16 87.0 96 62.5
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 8.0e-16 87.0 98 56.1
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 2.3e-15 85.5 94 64.9
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 3.4e-14 81.6 92 63.0
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 4.4e-14 81.3 90 58.9
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 4.4e-14 81.3 98 60.2
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 7.5e-14 80.5 93 57.0
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 7.5e-14 80.5 95 61.1
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 9.8e-14 80.1 102 58.8
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 1.7e-13 79.3 97 54.6
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 1.7e-13 79.3 98 61.2
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 2.2e-13 79.0 92 60.9
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 2.8e-13 78.6 93 60.2
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 3.7e-13 78.2 99 56.6
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 4.9e-13 77.8 95 61.1
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 6.3e-13 77.4 99 56.6
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 8.3e-13 77.0 95 60.0
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 8.3e-13 77.0 93 59.1
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 8.3e-13 77.0 98 56.1
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 1.4e-12 76.3 98 55.1
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 1.8e-12 75.9 95 63.2
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 1.8e-12 75.9 95 55.8
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 1.8e-12 75.9 94 55.3
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 2.4e-12 75.5 94 56.4
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 2.4e-12 75.5 99 56.6
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 3.1e-12 75.1 99 55.6
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 3.1e-12 75.1 97 54.6
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 3.1e-12 75.1 97 51.5
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 3.1e-12 75.1 100 55.0
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 4.1e-12 74.7 94 54.3
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 4.1e-12 74.7 90 60.0
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 7.0e-12 73.9 94 54.3
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 9.2e-12 73.6 97 55.7
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 9.2e-12 73.6 98 55.1
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 1.2e-11 73.2 99 55.6
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 1.6e-11 72.8 88 61.4
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.6e-11 72.8 97 52.6
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 2.0e-11 72.4 96 57.3
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 4.5e-11 71.2 97 54.6
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 7.8e-11 70.5 101 51.5
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 7.8e-11 70.5 101 51.5
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 1.3e-10 69.7 96 55.2
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 1.3e-10 69.7 66 65.2
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 1.3e-10 69.7 97 51.5
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 1.7e-10 69.3 93 53.8
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 1.7e-10 69.3 90 54.4
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 1.7e-10 69.3 94 55.3
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 2.9e-10 68.6 96 53.1
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 3.8e-10 68.2 90 51.1
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 6.6e-10 67.4 95 55.8
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 6.6e-10 67.4 92 55.4
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 8.6e-10 67.0 95 53.7
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 1.1e-09 66.6 100 56.0
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 1.1e-09 66.6 103 53.4
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 1.1e-09 66.6 94 53.2
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 1.5e-09 66.2 100 55.0
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 1.5e-09 66.2 104 49.0
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 1.5e-09 66.2 92 52.2
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 1.9e-09 65.9 94 57.4
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 1.9e-09 65.9 97 51.5
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 2.5e-09 65.5 86 55.8
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 3.3e-09 65.1 85 55.3
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 3.3e-09 65.1 94 55.3
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 3.3e-09 65.1 86 55.8
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 4.3e-09 64.7 95 53.7
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 4.3e-09 64.7 99 50.5
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 5.6e-09 64.3 97 47.4
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 9.5e-09 63.5 95 52.6
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 9.5e-09 63.5 95 52.6
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 9.5e-09 63.5 107 45.8
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 1.6e-08 62.8 101 50.5
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 2.1e-08 62.4 85 50.6
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 2.8e-08 62.0 86 54.7
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 2.8e-08 62.0 93 57.0
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 6.1e-08 60.8 89 51.7
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 6.1e-08 60.8 87 49.4
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 8.0e-08 60.5 100 48.0
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 3.0e-07 58.5 84 53.6
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 3.0e-07 58.5 99 46.5
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 3.0e-07 58.5 99 46.5
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 4.0e-07 58.2 99 46.5
SHI47168 Sapria himalayana HOM05D007491 ORTHO05D009489 4.0e-07 58.2 101 42.6
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 5.2e-07 57.8 52 59.6
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 5.2e-07 57.8 52 59.6
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 5.2e-07 57.8 52 59.6
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 6.8e-07 57.4 92 48.9
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 6.8e-07 57.4 90 48.9
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 1.2e-06 56.6 92 45.7
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 1.2e-06 56.6 95 46.3
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 1.5e-06 56.2 99 45.5
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 1.5e-06 56.2 99 45.5
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 1.5e-06 56.2 53 60.4
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 2.6e-06 55.5 52 61.5
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 2.6e-06 55.5 98 48.0
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 3.4e-06 55.1 79 44.3
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 3.4e-06 55.1 79 44.3
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 4.4e-06 54.7 53 58.5
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 4.4e-06 54.7 78 43.6
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 5.7e-06 54.3 92 44.6
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 5.7e-06 54.3 90 43.3
Os02g0273900 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 7.5e-06 53.9 54 55.6


User provided reference genes

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