Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 4.7e-208 727.6 374 100.0
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 4.3e-177 624.8 375 84.3
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 7.2e-172 607.4 378 81.0
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 7.7e-166 587.4 376 83.2
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 1.7e-165 586.3 378 79.9
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 4.2e-164 581.6 378 79.9
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 5.3e-151 538.1 374 73.8
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 6.5e-149 531.2 416 68.8
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 8.0e-147 524.2 375 71.5
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 7.7e-142 507.7 379 68.9
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 7.2e-140 501.1 379 71.2
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 1.0e-138 497.3 394 68.0
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 1.4e-138 496.9 393 70.2
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 4.0e-130 468.8 377 67.4
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 9.8e-129 464.2 376 68.4
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 2.2e-128 463.0 377 66.6
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 3.7e-128 462.2 380 65.3
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 7.8e-126 454.5 374 65.5
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 1.4e-122 443.7 406 63.8
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 2.3e-122 443.0 392 63.0
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 6.4e-120 434.9 311 73.3
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 7.0e-119 431.4 308 73.4
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 2.0e-118 429.9 309 72.5
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 1.0e-117 427.6 381 62.2
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 1.9e-116 423.3 377 61.3
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 3.3e-116 422.5 382 60.2
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 7.3e-116 421.4 305 72.1
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.1e-114 417.5 365 64.4
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 1.1e-114 417.5 388 60.1
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 4.0e-114 415.6 393 59.0
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 6.8e-114 414.8 393 58.8
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 3.4e-113 412.5 336 67.6
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 6.4e-112 408.3 361 60.7
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 1.9e-111 406.8 306 68.6
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 2.4e-111 406.4 528 49.2
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.0e-109 401.0 360 63.1
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 3.0e-109 399.4 367 60.5
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 7.3e-108 394.8 304 67.8
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 6.2e-107 391.7 380 58.9
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 6.2e-107 391.7 366 59.8
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.1e-106 391.0 378 58.5
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.4e-106 390.6 360 62.5
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 1.4e-106 390.6 358 59.8
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 2.3e-106 389.8 401 58.9
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 2.3e-106 389.8 433 54.7
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 3.1e-106 389.4 338 61.8
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 5.2e-106 388.7 381 58.3
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 5.2e-106 388.7 398 55.3
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 3.4e-105 386.0 300 68.0
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 1.3e-104 384.0 380 58.2
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 4.1e-103 379.0 371 58.5
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 2.1e-102 376.7 318 65.4
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 1.3e-101 374.0 429 54.5
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.3e-101 373.2 318 66.0
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 3.0e-101 372.9 380 56.8
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 1.2e-99 367.5 366 57.9
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 1.2e-99 367.5 366 57.9
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 1.6e-99 367.1 312 61.9
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 3.6e-99 365.9 387 55.0
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 8.1e-99 364.8 368 57.3
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 1.8e-98 363.6 319 61.8
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 8.9e-98 361.3 531 44.3
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 8.9e-98 361.3 384 56.8
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 2.6e-97 359.8 368 58.2
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 2.2e-96 356.7 454 47.6
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 3.2e-95 352.8 368 59.8
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 4.2e-95 352.4 370 57.0
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 7.1e-95 351.7 311 61.4
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 7.1e-95 351.7 309 61.8
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 1.7e-93 347.1 427 51.1
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 4.7e-91 339.0 384 57.0
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 3.2e-87 326.2 396 55.8
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 5.4e-87 325.5 238 73.1
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 1.6e-86 323.9 401 49.9
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 2.3e-85 320.1 334 57.5
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 1.5e-84 317.4 311 56.9
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 2.1e-83 313.5 378 51.3
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 2.1e-83 313.5 298 58.7
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.3e-80 304.3 384 50.8
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.7e-80 303.9 384 52.1
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 3.5e-78 296.2 400 50.0
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 1.3e-75 287.7 279 56.3
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 7.6e-73 278.5 374 49.7
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 1.9e-71 273.9 344 49.7
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 3.2e-71 273.1 452 42.9
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 3.9e-69 266.2 389 48.1
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 5.6e-68 262.3 364 49.5
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 2.0e-65 253.8 448 42.0
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 2.6e-65 253.4 395 47.1
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 4.5e-65 252.7 499 38.5
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 1.7e-64 250.8 399 45.4
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 3.8e-64 249.6 200 60.0
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 8.4e-64 248.4 302 49.0
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 8.4e-64 248.4 488 39.5
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 1.6e-62 244.2 404 44.8
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 4.6e-62 242.7 399 44.9
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 1.0e-61 241.5 397 43.6
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 4.3e-60 236.1 225 61.8
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 2.4e-58 230.3 369 50.1
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 2.5e-55 220.3 482 39.8
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 3.2e-55 219.9 192 61.5
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 6.7e-53 212.2 392 44.4
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 8.8e-53 211.8 381 44.4
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 5.7e-52 209.1 238 53.4
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 1.1e-50 204.9 383 43.3
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 1.4e-50 204.5 323 45.8
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 2.2e-48 197.2 380 42.9
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 1.2e-46 191.4 373 44.2
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 9.7e-44 181.8 361 39.1
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 2.0e-41 174.1 377 39.5
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 5.9e-41 172.6 300 43.0
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 8.5e-40 168.7 404 39.6
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 3.6e-38 163.3 396 39.1
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 3.6e-38 163.3 396 39.1
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 1.0e-37 161.8 242 49.2
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 1.3e-35 154.8 294 42.9
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 7.7e-33 145.6 339 38.1
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 9.4e-31 138.7 407 35.4
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 1.2e-30 138.3 280 38.9
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.8e-26 124.4 363 37.2
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 4.5e-25 119.8 324 38.6
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 1.3e-24 118.2 292 38.0
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 1.2e-22 111.7 334 35.6
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 2.7e-22 110.5 378 34.4
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 3.0e-21 107.1 292 34.6
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 9.1e-18 95.5 322 35.1
COL.COLO4_34822 Corchorus olitorius HOM05D005514 ORTHO05D006563 7.7e-17 92.4 78 76.9
MD15G1181500 Malus domestica HOM05D005514 ORTHO05D006563 6.6e-16 89.4 74 63.5
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 6.8e-13 79.3 166 39.2
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 2.2e-11 74.3 240 37.9
Lsat_1_v5_gn_5_102961 Lactuca sativa HOM05D005514 ORTHO05D006563 3.7e-11 73.6 64 64.1
Oeu064594.1 Olea europaea HOM05D005514 ORTHO05D006563 3.7e-11 73.6 74 66.2
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 3.5e-09 67.0 37 73.0
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 7.8e-09 65.9 146 38.4
Cc06_g09940 Coffea canephora HOM05D005514 ORTHO05D006563 1.3e-08 65.1 72 65.3
Lalb_Chr24g0397411 Lupinus albus HOM05D005514 ORTHO05D006563 4.7e-06 56.6 76 47.4
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 6.1e-06 56.2 43 58.1


User provided reference genes

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