Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G105200 Theobroma cacao HOM05D007452 ORTHO05D009375 2.9e-70 268.5 137 100.0
COL.COLO4_34802 Corchorus olitorius HOM05D007452 ORTHO05D009375 2.4e-64 248.8 137 92.7
Gohir.D06G063500 Gossypium hirsutum HOM05D007452 ORTHO05D009375 2.5e-58 228.8 137 87.6
TWI34G0936 Tripterygium wilfordii HOM05D007452 ORTHO05D009375 3.5e-52 208.4 139 79.1
Gorai.010G074100 Gossypium raimondii HOM05D007452 ORTHO05D009375 1.0e-51 206.8 123 87.0
Duzib187G0798 Durio zibethinus HOM05D007452 ORTHO05D009375 1.5e-50 203.0 122 86.9
Gohir.A06G065000 Gossypium hirsutum HOM05D007452 ORTHO05D009375 2.5e-50 202.2 123 84.6
Haze_25788 Corylus avellana HOM05D007452 ORTHO05D009375 7.4e-50 200.7 136 78.7
QL02p043240 Quercus lobata HOM05D007452 ORTHO05D009375 9.0e-48 193.7 133 77.4
QL02p044487 Quercus lobata HOM05D007452 ORTHO05D009375 9.0e-48 193.7 133 77.4
PGR102G0901 Punica granatum HOM05D007452 ORTHO05D009375 1.5e-47 193.0 135 73.3
Ciclev10009852m.g Citrus clementina HOM05D007452 ORTHO05D009375 4.5e-47 191.4 135 73.3
Sabra18G0072700 Salix brachista HOM05D007452 ORTHO05D009375 7.7e-47 190.7 136 73.5
Prupe.7G224900 Prunus persica HOM05D007452 ORTHO05D009375 3.8e-46 188.3 139 70.5
Atru.chr7.1416 Acer truncatum HOM05D007452 ORTHO05D009375 6.5e-46 187.6 143 68.5
MD02G1057900 Malus domestica HOM05D007452 ORTHO05D009375 8.5e-46 187.2 139 69.8
Potri.018G084400 Populus trichocarpa HOM05D007452 ORTHO05D009375 1.1e-45 186.8 137 72.3
CiPaw.04G161200 Carya illinoinensis HOM05D007452 ORTHO05D009375 1.4e-45 186.4 126 77.0
MD15G1192300 Malus domestica HOM05D007452 ORTHO05D009375 1.4e-45 186.4 137 70.1
FvH4_1g05720 Fragaria vesca HOM05D007452 ORTHO05D009375 1.9e-45 186.0 137 70.1
FAN26G0145 Fragaria x ananassa HOM05D007452 ORTHO05D009375 1.9e-45 186.0 137 69.3
FAN28G0080 Fragaria x ananassa HOM05D007452 ORTHO05D009375 2.5e-45 185.7 137 69.3
PGSC0003DMG400023982 Solanum tuberosum HOM05D007452 ORTHO05D009375 2.5e-45 185.7 135 70.4
GSVIVG01015344001 Vitis vinifera HOM05D007452 ORTHO05D009375 3.2e-45 185.3 135 70.4
FAN26G2311 Fragaria x ananassa HOM05D007452 ORTHO05D009375 4.2e-45 184.9 137 68.6
FAN19G0597 Fragaria x ananassa HOM05D007452 ORTHO05D009375 9.4e-45 183.7 137 69.3
Nitab4.5_0002165g0070 Nicotiana tabacum HOM05D007452 ORTHO05D009375 2.1e-44 182.6 135 68.9
Nitab4.5_0003331g0020 Nicotiana tabacum HOM05D007452 ORTHO05D009375 2.7e-44 182.2 135 68.9
vmacro06236 Vaccinium macrocarpon HOM05D007452 ORTHO05D009375 2.7e-44 182.2 135 69.6
Cc06_g10100 Coffea canephora HOM05D007452 ORTHO05D009375 3.6e-44 181.8 135 69.6
RcHm_v2.0_Chr2g0091331 Rosa chinensis HOM05D007452 ORTHO05D009375 6.1e-44 181.0 136 68.4
AT5G19570 Arabidopsis thaliana HOM05D007452 ORTHO05D009375 1.0e-43 180.3 132 67.4
Solyc11g006870.1 Solanum lycopersicum HOM05D007452 ORTHO05D009375 1.8e-43 179.5 135 67.4
Sopen11g002770 Solanum pennellii HOM05D007452 ORTHO05D009375 1.8e-43 179.5 135 67.4
AL6G31080 Arabidopsis lyrata HOM05D007452 ORTHO05D009375 3.9e-43 178.3 133 66.9
MELO3C024705.2 Cucumis melo HOM05D007452 ORTHO05D009375 3.9e-43 178.3 137 68.6
CARHR193330 Cardamine hirsuta HOM05D007452 ORTHO05D009375 6.7e-43 177.6 133 69.2
BcaB05g23392 Brassica carinata HOM05D007452 ORTHO05D009375 8.8e-43 177.2 136 64.0
Nitab4.5_0000066g0140 Nicotiana tabacum HOM05D007452 ORTHO05D009375 8.8e-43 177.2 135 65.9
THA.LOC104799068 Tarenaya hassleriana HOM05D007452 ORTHO05D009375 1.1e-42 176.8 136 67.6
THA.LOC104808980 Tarenaya hassleriana HOM05D007452 ORTHO05D009375 1.1e-42 176.8 136 67.6
Thhalv10014912m.g Eutrema salsugineum HOM05D007452 ORTHO05D009375 1.5e-42 176.4 133 66.9
PSO210G5570 Papaver somniferum HOM05D007452 ORTHO05D009375 1.5e-42 176.4 131 67.9
TAR636G3481 Trochodendron aralioides HOM05D007452 ORTHO05D009375 2.0e-42 176.0 134 65.7
Cfa003221 Carpinus fangiana HOM05D007452 ORTHO05D009375 3.3e-42 175.3 124 76.6
Sed0023851 Sechium edule HOM05D007452 ORTHO05D009375 4.3e-42 174.9 137 68.6
BcaC03g13689 Brassica carinata HOM05D007452 ORTHO05D009375 7.4e-42 174.1 132 62.9
BNapus_Darmor_BZH_scaffold_38p02290 Brassica napus HOM05D007452 ORTHO05D009375 7.4e-42 174.1 132 62.9
Nn2g11650 Nelumbo nucifera HOM05D007452 ORTHO05D009375 7.4e-42 174.1 132 67.4
A02p05660 Brassica napus HOM05D007452 ORTHO05D009375 1.3e-41 173.3 137 62.0
Glyma.08G035800 Glycine max HOM05D007452 ORTHO05D009375 2.2e-41 172.6 131 69.5
Eucgr.C01281 Eucalyptus grandis HOM05D007452 ORTHO05D009375 2.8e-41 172.2 125 72.8
BraA02t05518Z Brassica rapa HOM05D007452 ORTHO05D009375 3.7e-41 171.8 136 61.0
CAN.G645.18 Capsicum annuum HOM05D007452 ORTHO05D009375 3.7e-41 171.8 136 64.7
Medtr8g102920 Medicago truncatula HOM05D007452 ORTHO05D009375 4.8e-41 171.4 131 64.9
Ca_17318_v3 Cicer arietinum L. HOM05D007452 ORTHO05D009375 1.1e-40 170.2 133 66.9
Phvul.002G311100 Phaseolus vulgaris HOM05D007452 ORTHO05D009375 1.1e-40 170.2 131 67.9
Ah.09g230860 Amaranthus hybridus HOM05D007452 ORTHO05D009375 2.4e-40 169.1 135 65.2
SalBow6G2888 Salvia bowleyana HOM05D007452 ORTHO05D009375 3.1e-40 168.7 132 68.9
MSTRG.19570 Avicennia marina HOM05D007452 ORTHO05D009375 4.1e-40 168.3 131 66.4
AUR62021449 Chenopodium quinoa HOM05D007452 ORTHO05D009375 4.1e-40 168.3 135 64.4
Oeu002255.1 Olea europaea HOM05D007452 ORTHO05D009375 1.5e-39 166.4 134 66.4
Lsat_1_v5_gn_5_147400 Lactuca sativa HOM05D007452 ORTHO05D009375 3.4e-39 165.2 136 66.2
Migut.J01126 Erythranthe guttata HOM05D007452 ORTHO05D009375 4.5e-39 164.9 136 66.9
Carub.0006s1792 Capsella rubella HOM05D007452 ORTHO05D009375 5.9e-39 164.5 135 62.2
Manes.03G024500 Manihot esculenta HOM05D007452 ORTHO05D009375 1.0e-38 163.7 122 67.2
Psat7g014560 Pisum sativum HOM05D007452 ORTHO05D009375 1.0e-38 163.7 133 63.9
Dinv41642 Davidia involucrata HOM05D007452 ORTHO05D009375 1.3e-38 163.3 121 71.9
Rhsim03G0239200 Rhododendron simsii HOM05D007452 ORTHO05D009375 1.7e-38 162.9 121 70.2
SGA_v2.0_scaffold10G05148 Striga asiatica HOM05D007452 ORTHO05D009375 1.7e-38 162.9 131 67.9
HanXRQChr10g0318511 Helianthus annuus HOM05D007452 ORTHO05D009375 6.5e-38 161.0 137 64.2
Aqoxy7G01521 Aquilegia oxysepala HOM05D007452 ORTHO05D009375 8.5e-38 160.6 128 63.3
ClCG06G008870 Citrullus lanatus HOM05D007452 ORTHO05D009375 4.2e-37 158.3 119 70.6
Sc08g0007740 Simmondsia chinensis HOM05D007452 ORTHO05D009375 9.4e-37 157.1 133 62.4
unitig_899.g15033 Utricularia gibba HOM05D007452 ORTHO05D009375 1.2e-36 156.8 136 62.5
Glyma.05G228800 Glycine max HOM05D007452 ORTHO05D009375 2.1e-36 156.0 133 64.7
Peaxi162Scf00539g00066 Petunia axillaris HOM05D007452 ORTHO05D009375 2.1e-36 156.0 117 65.0
ATR0315G055 Amborella trichopoda HOM05D007452 ORTHO05D009375 2.7e-36 155.6 129 61.2
HPP92_008140 Vanilla planifolia HOM05D007452 ORTHO05D009375 4.7e-36 154.8 137 60.6
DCAR_012055 Daucus carota HOM05D007452 ORTHO05D009375 3.0e-35 152.1 135 59.3
BolC2t06971H Brassica oleracea HOM05D007452 ORTHO05D009375 3.9e-35 151.8 119 62.2
Aa31LG5G13720 Aethionema arabicum HOM05D007452 ORTHO05D009375 1.1e-34 150.2 118 67.8
CiPaw.08G085300 Carya illinoinensis HOM05D007452 ORTHO05D009375 1.1e-34 150.2 130 64.6
Lalb_Chr05g0223071 Lupinus albus HOM05D007452 ORTHO05D009375 2.6e-34 149.1 123 61.0
Os05g0188300 Oryza sativa ssp. japonica HOM05D007452 ORTHO05D009375 1.1e-32 143.7 135 57.8
MBI04_g14927_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 1.8e-32 142.9 118 64.4
Sopen08g027980 Solanum pennellii HOM05D007452 ORTHO05D009375 2.0e-31 139.4 129 57.4
CDE02G1573 Ceratophyllum demersum HOM05D007452 ORTHO05D009375 2.9e-30 135.6 129 54.3
EL10Ac8g18425 Beta vulgaris HOM05D007452 ORTHO05D009375 8.5e-30 134.0 108 63.0
Zm00001eb089090 Zea mays HOM05D007452 ORTHO05D009375 2.5e-29 132.5 135 54.8
HanXRQChr03g0087651 Helianthus annuus HOM05D007452 ORTHO05D009375 3.2e-29 132.1 123 61.0
SEGI_20837 Sequoiadendron giganteum HOM05D007452 ORTHO05D009375 5.5e-29 131.3 136 52.9
CsaV3_1G020810 Cucumis sativus L. HOM05D007452 ORTHO05D009375 1.6e-28 129.8 103 67.0
Cfa001992 Carpinus fangiana HOM05D007452 ORTHO05D009375 3.9e-27 125.2 96 71.9
CSS0004194 Camellia sinensis var. sinensis HOM05D007452 ORTHO05D009375 5.2e-27 124.8 128 54.7
HanXRQChr02g0047631 Helianthus annuus HOM05D007452 ORTHO05D009375 1.0e-22 110.5 116 56.9
SMO119G0523 Selaginella moellendorffii HOM05D007452 ORTHO05D009375 2.5e-21 105.9 132 49.2
Pp3c5_13600 Physcomitrium patens HOM05D007452 ORTHO05D009375 2.7e-20 102.4 129 45.7
Mapoly0005s0019 Marchantia polymorpha HOM05D007452 ORTHO05D009375 1.5e-18 96.7 131 41.2
AagrBONN_evm.TU.Sc2ySwM_117.3226 Anthoceros agrestis HOM05D007452 ORTHO05D009375 4.1e-16 88.6 125 44.0
MBI12_g37480_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 2.8e-09 65.9 51 70.6
MBI05_g24448_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 9.1e-08 60.8 70 52.9


User provided reference genes

Program Settings