Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 0.0e+00 1226.8 704 100.0
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 1.6e-297 1025.8 705 84.4
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 7.1e-290 1000.3 705 82.3
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.1e-289 998.8 713 80.9
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.2e-284 983.0 705 81.0
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.9e-283 978.4 705 80.7
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.1e-281 972.2 713 80.5
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.0e-267 926.8 734 76.6
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 5.3e-261 904.4 705 76.6
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 2.7e-257 892.1 709 73.9
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.2e-255 886.7 711 73.6
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.0e-251 873.6 614 81.9
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 3.2e-250 868.6 714 72.5
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 8.0e-249 864.0 709 72.4
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 1.4e-245 853.2 711 72.2
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 4.1e-245 851.7 712 72.5
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 8.0e-241 837.4 712 70.5
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 4.0e-240 835.1 755 67.9
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 7.5e-239 830.9 716 71.1
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 2.8e-238 828.9 696 71.3
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 4.9e-238 828.2 709 69.8
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 2.0e-236 822.8 717 70.0
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.3e-235 819.3 712 69.0
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 6.6e-235 817.8 729 69.0
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 8.6e-235 817.4 711 69.6
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 1.9e-234 816.2 713 69.6
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 1.2e-233 813.5 712 68.7
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 6.1e-233 811.2 711 69.5
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 2.4e-229 799.3 696 69.5
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 3.9e-227 792.0 711 69.1
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 1.5e-226 790.0 715 68.4
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 3.1e-224 782.3 606 75.4
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 4.0e-224 781.9 715 67.8
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 2.9e-222 775.8 712 65.4
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 6.4e-222 774.6 713 66.6
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 3.2e-221 772.3 715 66.6
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 5.4e-221 771.5 713 66.8
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.9e-218 763.1 728 65.5
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 1.4e-216 756.9 743 64.3
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 1.9e-213 746.5 715 65.3
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 2.3e-211 739.6 655 69.5
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 2.1e-209 733.0 717 63.5
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 1.4e-208 730.3 716 64.7
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 6.8e-208 728.0 714 65.8
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 8.9e-208 727.6 726 62.9
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 5.8e-207 724.9 725 62.6
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 7.6e-207 724.5 770 60.5
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 3.8e-206 722.2 733 63.7
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 1.7e-203 713.4 710 61.4
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 3.9e-203 712.2 712 65.0
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 1.1e-202 710.7 710 63.7
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 2.1e-201 706.4 715 63.8
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 3.6e-201 705.7 721 61.3
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 3.6e-201 705.7 722 61.6
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 1.8e-200 703.4 719 61.5
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 2.4e-200 703.0 704 63.2
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 4.0e-200 702.2 737 60.8
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 4.0e-200 702.2 722 61.6
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 6.9e-200 701.4 723 62.5
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 6.9e-200 701.4 727 64.0
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 1.5e-199 700.3 737 60.7
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 2.0e-199 699.9 717 61.6
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 5.4e-197 691.8 711 61.9
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 2.1e-196 689.9 715 61.3
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 2.1e-196 689.9 708 61.3
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 6.0e-196 688.3 715 61.8
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 1.0e-195 687.6 730 61.0
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.3e-195 687.2 728 62.9
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 2.3e-195 686.4 631 68.0
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 3.0e-195 686.0 728 62.9
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 1.1e-194 684.1 738 60.2
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 3.3e-194 682.6 722 60.9
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 4.3e-194 682.2 715 61.3
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 7.3e-194 681.4 728 62.4
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 5.8e-191 671.8 738 61.4
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 1.7e-190 670.2 719 60.5
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.7e-190 670.2 741 59.2
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 8.7e-187 657.9 708 62.9
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 6.2e-185 651.7 742 56.3
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 6.2e-185 651.7 712 61.4
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 1.8e-184 650.2 721 58.5
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 6.9e-184 648.3 715 60.7
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 2.6e-183 646.4 740 60.0
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 6.4e-182 641.7 730 56.6
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 7.1e-181 638.3 717 59.3
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 4.6e-180 635.6 724 56.6
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 5.1e-179 632.1 721 59.1
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 6.7e-179 631.7 710 59.7
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 5.6e-178 628.6 738 58.8
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 4.8e-177 625.5 719 57.4
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.0e-175 620.2 799 53.6
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 3.4e-175 619.4 712 57.7
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 3.4e-175 619.4 717 56.2
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 2.5e-173 613.2 709 55.3
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 2.5e-173 613.2 477 71.9
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 2.3e-171 606.7 707 55.6
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 3.0e-171 606.3 758 55.4
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 6.7e-171 605.1 772 54.1
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 1.8e-168 597.0 723 57.4
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 5.1e-163 578.9 759 51.9
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 8.8e-163 578.2 699 56.5
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 2.2e-158 563.5 380 81.8
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 5.1e-155 552.4 727 52.3
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 3.3e-154 549.7 616 59.1
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 1.1e-152 544.7 727 50.6
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 2.5e-149 533.5 727 51.6
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.8e-136 490.7 665 52.8
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 5.5e-133 479.2 449 65.7
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 2.2e-129 467.2 528 58.1
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.1e-112 411.8 495 57.8
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 9.2e-112 408.7 495 57.6
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 7.8e-103 379.0 430 57.7
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 1.1e-99 368.6 731 40.1
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.1e-96 358.6 229 85.6
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 6.6e-94 349.4 236 83.1
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.1e-85 322.0 211 83.4
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.1e-85 322.0 211 83.4
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.3e-84 318.5 231 77.5
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 4.8e-84 316.6 440 52.3
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.8e-83 314.7 231 77.5
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 2.7e-79 300.8 437 51.5
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 3.0e-78 297.4 186 86.6
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 9.0e-75 285.8 380 51.3
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.9e-72 278.1 527 41.7
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 5.1e-70 270.0 172 85.5
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 7.9e-63 246.1 466 39.7
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 3.1e-59 234.2 136 91.9
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 6.3e-52 209.9 398 43.2
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 3.9e-46 190.7 547 36.4
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.2e-39 169.1 324 45.1
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 2.1e-39 168.3 201 57.7
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 7.2e-32 143.3 86 90.7
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 3.6e-31 141.0 212 49.1
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 3.0e-30 137.9 94 76.6
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 3.3e-29 134.4 242 40.9
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 2.4e-27 128.3 189 52.9
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.0e-25 120.6 70 92.9
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.0e-25 120.6 70 92.9
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.0e-25 120.6 70 92.9
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 3.2e-24 117.9 72 87.5
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 7.2e-24 116.7 296 36.5
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.0e-22 110.9 70 90.0
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 5.2e-14 84.0 65 67.7
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 2.6e-13 81.6 449 25.6
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 2.7e-10 71.6 62 67.7
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.7e-09 68.9 307 31.6
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.5e-08 65.9 50 76.0
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 9.5e-08 63.2 70 52.9
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 8.0e-07 60.1 319 25.4
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 1.0e-06 59.7 319 25.4
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 2.3e-06 58.5 311 25.7
CARHR266410 Cardamine hirsuta HOM05D004485 ORTHO05D005485 3.0e-06 58.2 112 41.1
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 8.9e-06 56.6 312 24.0
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 8.9e-06 56.6 465 25.2


User provided reference genes

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