Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G099700 Theobroma cacao HOM05D008202 ORTHO05D010302 3.8e-48 194.5 97 100.0
Gohir.A06G067500 Gossypium hirsutum HOM05D008202 ORTHO05D010302 1.8e-29 132.5 92 75.0
Gorai.010G077500 Gossypium raimondii HOM05D008202 ORTHO05D010302 4.3e-28 127.9 92 72.8
Gohir.D06G066100 Gossypium hirsutum HOM05D008202 ORTHO05D010302 3.1e-26 121.7 92 71.7
Dinv42250 Davidia involucrata HOM05D008202 ORTHO05D010302 8.4e-24 113.6 92 64.1
COL.COLO4_34733 Corchorus olitorius HOM05D008202 ORTHO05D010302 2.4e-23 112.1 140 51.4
Haze_25829 Corylus avellana HOM05D008202 ORTHO05D010302 7.1e-23 110.5 92 59.8
CiPaw.04G155900 Carya illinoinensis HOM05D008202 ORTHO05D010302 9.3e-23 110.2 89 64.0
Manes.03G026600 Manihot esculenta HOM05D008202 ORTHO05D010302 1.2e-22 109.8 89 64.0
TWI63G1052 Tripterygium wilfordii HOM05D008202 ORTHO05D010302 4.6e-22 107.8 92 63.0
CiPaw.04G157000 Carya illinoinensis HOM05D008202 ORTHO05D010302 1.0e-21 106.7 89 62.9
Actinidia17520 Actinidia chinensis HOM05D008202 ORTHO05D010302 6.7e-21 104.0 91 59.3
Ciclev10010342m.g Citrus clementina HOM05D008202 ORTHO05D010302 1.1e-20 103.2 80 65.0
Hma1.2p1_0386F.1_g141760 Hydrangea macrophylla HOM05D008202 ORTHO05D010302 1.6e-19 99.4 92 57.6
Cc06_g10540 Coffea canephora HOM05D008202 ORTHO05D010302 8.2e-19 97.1 92 57.6
Manes.04G125801 Manihot esculenta HOM05D008202 ORTHO05D010302 8.2e-19 97.1 78 62.8
Manes.13G078801 Manihot esculenta HOM05D008202 ORTHO05D010302 8.2e-19 97.1 78 62.8
Actinidia39781 Actinidia chinensis HOM05D008202 ORTHO05D010302 1.4e-18 96.3 88 56.8
CSS0001567 Camellia sinensis var. sinensis HOM05D008202 ORTHO05D010302 1.8e-18 95.9 92 57.6
Ciclev10027039m.g Citrus clementina HOM05D008202 ORTHO05D010302 2.4e-18 95.5 97 53.6
Ciclev10027258m.g Citrus clementina HOM05D008202 ORTHO05D010302 9.0e-18 93.6 69 66.7
GSVIVG01015295001 Vitis vinifera HOM05D008202 ORTHO05D010302 2.0e-17 92.4 94 54.3
Atru.chr7.1471 Acer truncatum HOM05D008202 ORTHO05D010302 2.6e-17 92.0 88 54.5
HanXRQChr12g0358111 Helianthus annuus HOM05D008202 ORTHO05D010302 2.6e-17 92.0 96 56.2
Sc18g0001520 Simmondsia chinensis HOM05D008202 ORTHO05D010302 5.8e-17 90.9 92 55.4
Oeu018577.1 Olea europaea HOM05D008202 ORTHO05D010302 1.3e-16 89.7 89 51.7
Lsat_1_v5_gn_8_98261 Lactuca sativa HOM05D008202 ORTHO05D010302 2.2e-16 89.0 89 53.9
MSTRG.19550 Avicennia marina HOM05D008202 ORTHO05D010302 3.8e-16 88.2 97 52.6
Dinv36682 Davidia involucrata HOM05D008202 ORTHO05D010302 3.8e-16 88.2 92 55.4
EL10Ac8g18376 Beta vulgaris HOM05D008202 ORTHO05D010302 2.5e-15 85.5 96 49.0
vmacro10849 Vaccinium macrocarpon HOM05D008202 ORTHO05D010302 2.5e-15 85.5 78 56.4
Peaxi162Scf00720g00418 Petunia axillaris HOM05D008202 ORTHO05D010302 3.2e-15 85.1 75 60.0
Rhsim05G0039400 Rhododendron simsii HOM05D008202 ORTHO05D010302 1.2e-14 83.2 97 47.4
Eucgr.C03726 Eucalyptus grandis HOM05D008202 ORTHO05D010302 1.6e-14 82.8 84 52.4
DCAR_028656 Daucus carota HOM05D008202 ORTHO05D010302 2.7e-14 82.0 89 51.7
Prupe.7G218700 Prunus persica HOM05D008202 ORTHO05D010302 2.7e-14 82.0 92 50.0
FAN23G0175 Fragaria x ananassa HOM05D008202 ORTHO05D010302 4.6e-14 81.3 99 48.5
Ah.14g083220 Amaranthus hybridus HOM05D008202 ORTHO05D010302 1.3e-13 79.7 92 51.1
AUR62010887 Chenopodium quinoa HOM05D008202 ORTHO05D010302 1.3e-13 79.7 91 51.6
FvH4_1g06280 Fragaria vesca HOM05D008202 ORTHO05D010302 2.3e-13 79.0 99 48.5
FAN19G1093 Fragaria x ananassa HOM05D008202 ORTHO05D010302 2.3e-13 79.0 99 48.5
AUR62021399 Chenopodium quinoa HOM05D008202 ORTHO05D010302 3.0e-13 78.6 92 50.0
Nn8g39054 Nelumbo nucifera HOM05D008202 ORTHO05D010302 3.0e-13 78.6 96 45.8
Medtr6g088800 Medicago truncatula HOM05D008202 ORTHO05D010302 3.9e-13 78.2 51 68.6
SGA_v2.0_scaffold512G52633 Striga asiatica HOM05D008202 ORTHO05D010302 3.9e-13 78.2 98 46.9
MD02G1066600 Malus domestica HOM05D008202 ORTHO05D010302 5.1e-13 77.8 91 48.4
Migut.K00545 Erythranthe guttata HOM05D008202 ORTHO05D010302 8.7e-13 77.0 97 46.4
PGSC0003DMG400046448 Solanum tuberosum HOM05D001685 ORTHO05D006653 8.7e-13 77.0 90 47.8
Solyc04g058130.3 Solanum lycopersicum HOM05D008202 ORTHO05D010302 1.1e-12 76.6 90 47.8
FAN26G0167 Fragaria x ananassa HOM05D008202 ORTHO05D010302 4.8e-11 71.2 57 59.6
FAN26G3206 Fragaria x ananassa HOM05D008202 ORTHO05D010302 4.8e-11 71.2 57 59.6
Ah.14g082540 Amaranthus hybridus HOM05D008202 ORTHO05D010302 6.3e-11 70.9 76 50.0
CDE08G1102 Ceratophyllum demersum HOM05D008202 ORTHO05D010302 1.1e-10 70.1 90 42.2
MBI01_g10122_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 6.9e-10 67.4 67 49.3
RcHm_v2.0_Chr2g0091981 Rosa chinensis HOM05D008202 ORTHO05D010302 9.0e-10 67.0 47 61.7
CsaV3_2G001850 Cucumis sativus L. HOM05D008202 ORTHO05D010302 1.2e-09 66.6 74 48.6
Nitab4.5_0002557g0010 Nicotiana tabacum HOM05D001685 ORTHO05D006653 1.2e-09 66.6 82 43.9
Lalb_Chr14g0371911 Lupinus albus HOM05D008202 ORTHO05D010302 1.5e-09 66.2 91 45.1
ATR0705G156 Amborella trichopoda HOM05D008202 ORTHO05D010302 2.0e-09 65.9 85 47.1
ClCG11G002070 Citrullus lanatus HOM05D008202 ORTHO05D010302 2.6e-09 65.5 73 49.3
MD15G1197100 Malus domestica HOM05D008202 ORTHO05D010302 2.6e-09 65.5 83 45.8
HPP92_009087 Vanilla planifolia HOM05D008202 ORTHO05D010302 1.0e-08 63.5 91 38.5
Mapoly0004s0023 Marchantia polymorpha HOM05D039400 ORTHO05D034304 8.5e-08 60.5 50 52.0
Psat1g048280 Pisum sativum HOM05D008202 ORTHO05D010302 1.4e-07 59.7 88 38.6
Zm00001eb371180 Zea mays HOM05D008202 ORTHO05D010302 1.9e-07 59.3 58 43.1
unitig_52.g17095 Utricularia gibba HOM05D008202 ORTHO05D010302 5.5e-07 57.8 54 42.6
PSO210G1322 Papaver somniferum HOM05D061259 ORTHO05D010302 9.3e-07 57.0 35 60.0
PSO210G2383 Papaver somniferum HOM05D061259 ORTHO05D010302 9.3e-07 57.0 35 60.0
Os01g0742766 Oryza sativa ssp. japonica HOM05D008202 ORTHO05D010302 1.2e-06 56.6 82 42.7
PGR102G0794 Punica granatum HOM05D008202 ORTHO05D010302 2.1e-06 55.8 83 47.0
unitig_52.g17250 Utricularia gibba HOM05D008202 ORTHO05D010302 4.6e-06 54.7 54 42.6
CAN.G1325.3 Capsicum annuum HOM05D001685 ORTHO05D006653 7.9e-06 53.9 91 38.5


User provided reference genes

Program Settings