Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G094900 Theobroma cacao HOM05D006529 ORTHO05D008380 3.1e-113 411.8 200 100.0
Duzib150G0994 Durio zibethinus HOM05D006529 ORTHO05D008380 1.3e-95 353.2 200 87.0
COL.COLO4_18251 Corchorus olitorius HOM05D006529 ORTHO05D008380 1.2e-93 346.7 206 83.0
Gohir.D05G029600 Gossypium hirsutum HOM05D006529 ORTHO05D008380 1.3e-92 343.2 200 83.5
Gorai.009G029800 Gossypium raimondii HOM05D006529 ORTHO05D008380 1.3e-92 343.2 200 83.5
Gohir.A05G027800 Gossypium hirsutum HOM05D006529 ORTHO05D008380 1.9e-91 339.3 200 82.5
Cfa003138 Carpinus fangiana HOM05D006529 ORTHO05D008380 5.9e-80 301.2 199 72.4
Atru.chr7.1518 Acer truncatum HOM05D006529 ORTHO05D008380 1.0e-76 290.4 204 70.1
Ciclev10009577m.g Citrus clementina HOM05D006529 ORTHO05D008380 1.4e-76 290.0 201 70.6
Prupe.7G215100 Prunus persica HOM05D006529 ORTHO05D008380 5.1e-76 288.1 205 69.3
MD02G1072300 Malus domestica HOM05D006529 ORTHO05D008380 8.8e-76 287.3 205 69.3
Manes.16G105400 Manihot esculenta HOM05D006529 ORTHO05D008380 8.8e-76 287.3 205 69.3
Hund07265 Selenicereus undatus HOM05D006529 ORTHO05D008380 8.8e-76 287.3 205 67.8
CiPaw.04G153200 Carya illinoinensis HOM05D006529 ORTHO05D008380 1.1e-75 287.0 198 67.7
Potri.006G153800 Populus trichocarpa HOM05D006529 ORTHO05D008380 1.5e-75 286.6 203 70.0
TAR624G0297 Trochodendron aralioides HOM05D006529 ORTHO05D008380 1.5e-75 286.6 204 69.6
RcHm_v2.0_Chr2g0092481 Rosa chinensis HOM05D006529 ORTHO05D008380 2.0e-75 286.2 198 68.2
QL02p063543 Quercus lobata HOM05D006529 ORTHO05D008380 3.7e-74 282.0 238 58.4
Dinv36729 Davidia involucrata HOM05D006529 ORTHO05D008380 6.3e-74 281.2 206 66.5
GSVIVG01015253001 Vitis vinifera HOM05D006529 ORTHO05D008380 1.4e-73 280.0 199 68.8
Cc06_g10920 Coffea canephora HOM05D006529 ORTHO05D008380 1.8e-73 279.6 202 68.8
CSS0016193 Camellia sinensis var. sinensis HOM05D006529 ORTHO05D008380 2.4e-73 279.3 199 65.3
FvH4_1g06740 Fragaria vesca HOM05D006529 ORTHO05D008380 2.4e-73 279.3 200 66.0
FAN19G1593 Fragaria x ananassa HOM05D006529 ORTHO05D008380 2.4e-73 279.3 200 66.0
Ca_17386_v3 Cicer arietinum L. HOM05D006529 ORTHO05D008380 3.1e-73 278.9 201 68.2
FAN23G2505 Fragaria x ananassa HOM05D006529 ORTHO05D008380 4.1e-73 278.5 200 65.5
AUR62006831 Chenopodium quinoa HOM05D006529 ORTHO05D008380 5.3e-73 278.1 204 65.2
Dinv42286 Davidia involucrata HOM05D006529 ORTHO05D008380 9.1e-73 277.3 213 63.4
PGR142G1231 Punica granatum HOM05D006529 ORTHO05D008380 2.6e-72 275.8 206 65.0
A03p56550 Brassica napus HOM05D006529 ORTHO05D008380 3.4e-72 275.4 206 63.1
Carub.0007s1471 Capsella rubella HOM05D006529 ORTHO05D008380 3.4e-72 275.4 204 64.2
Thhalv10026289m.g Eutrema salsugineum HOM05D006529 ORTHO05D008380 3.4e-72 275.4 204 64.2
AT4G26240 Arabidopsis thaliana HOM05D006529 ORTHO05D008380 5.9e-72 274.6 204 63.2
CARHR233790 Cardamine hirsuta HOM05D006529 ORTHO05D008380 7.7e-72 274.2 204 63.2
Ah.06g190810 Amaranthus hybridus HOM05D006529 ORTHO05D008380 1.0e-71 273.9 205 65.9
AUR62000487 Chenopodium quinoa HOM05D006529 ORTHO05D008380 1.0e-71 273.9 201 64.7
AL7G26720 Arabidopsis lyrata HOM05D006529 ORTHO05D008380 1.7e-71 273.1 204 63.7
Sp7g24240 Schrenkiella parvula HOM05D006529 ORTHO05D008380 1.7e-71 273.1 204 63.7
Nn8g38953 Nelumbo nucifera HOM05D006529 ORTHO05D008380 2.9e-71 272.3 209 65.1
vmacro06269 Vaccinium macrocarpon HOM05D006529 ORTHO05D008380 5.0e-71 271.6 208 64.9
Lj7C671T1 Lonicera japonica HOM05D006529 ORTHO05D008380 6.5e-71 271.2 217 61.8
MD15G1202100 Malus domestica HOM05D006529 ORTHO05D008380 6.5e-71 271.2 205 65.4
Nitab4.5_0004011g0030 Nicotiana tabacum HOM05D006529 ORTHO05D008380 6.5e-71 271.2 205 62.9
TWI63G1011 Tripterygium wilfordii HOM05D006529 ORTHO05D008380 8.5e-71 270.8 202 67.8
FAN14G0658 Fragaria x ananassa HOM05D006529 ORTHO05D008380 1.1e-70 270.4 199 64.3
Eucgr.C00932 Eucalyptus grandis HOM05D006529 ORTHO05D008380 2.5e-70 269.2 212 60.4
Glyma.05G223900 Glycine max HOM05D006529 ORTHO05D008380 2.5e-70 269.2 201 66.2
VMungo0251G0255 Vigna mungo HOM05D006529 ORTHO05D008380 2.5e-70 269.2 201 65.7
BcaC06g32765 Brassica carinata HOM05D006529 ORTHO05D008380 4.2e-70 268.5 208 63.0
C07p54750 Brassica napus HOM05D006529 ORTHO05D008380 4.2e-70 268.5 206 62.6
BolC7t45964H Brassica oleracea HOM05D006529 ORTHO05D008380 4.2e-70 268.5 206 62.6
Lalb_Chr05g0223501 Lupinus albus HOM05D006529 ORTHO05D008380 7.2e-70 267.7 202 64.9
Glyma.08G031000 Glycine max HOM05D006529 ORTHO05D008380 1.2e-69 266.9 201 65.7
Haze_25864 Corylus avellana HOM05D006529 ORTHO05D008380 2.1e-69 266.2 199 65.8
DCAR_012008 Daucus carota HOM05D006529 ORTHO05D008380 2.1e-69 266.2 189 65.1
Lj4g0018594 Lotus japonicus HOM05D006529 ORTHO05D008380 2.7e-69 265.8 201 66.2
BraA03t14725Z Brassica rapa HOM05D006529 ORTHO05D008380 4.7e-69 265.0 207 61.4
Actinidia29893 Actinidia chinensis HOM05D006529 ORTHO05D008380 6.1e-69 264.6 220 61.8
CAN.G142.8 Capsicum annuum HOM05D006529 ORTHO05D008380 5.2e-68 261.5 201 61.7
THA.LOC104813489 Tarenaya hassleriana HOM05D006529 ORTHO05D008380 5.2e-68 261.5 203 61.1
ClCG03G015880 Citrullus lanatus HOM05D006529 ORTHO05D008380 6.7e-68 261.2 205 60.5
ECA240G3812 Erigeron canadensis HOM05D006529 ORTHO05D008380 6.7e-68 261.2 209 60.3
arahy.Tifrunner.gnm1.ann1.YG2MQU Arachis hypogaea HOM05D006529 ORTHO05D008380 1.1e-67 260.4 202 63.9
Phvul.002G305700 Phaseolus vulgaris HOM05D006529 ORTHO05D008380 2.6e-67 259.2 201 64.7
Nn6g35394 Nelumbo nucifera HOM05D006529 ORTHO05D008380 3.3e-67 258.8 206 61.2
Aqoxy7G01329 Aquilegia oxysepala HOM05D006529 ORTHO05D008380 5.7e-67 258.1 199 61.3
HanXRQChr09g0238511 Helianthus annuus HOM05D006529 ORTHO05D008380 5.7e-67 258.1 201 62.7
arahy.Tifrunner.gnm1.ann1.HB8I5Y Arachis hypogaea HOM05D006529 ORTHO05D008380 7.4e-67 257.7 202 63.4
Medtr8g101990 Medicago truncatula HOM05D006529 ORTHO05D008380 1.4e-65 253.4 202 62.9
Aqoxy199s004 Aquilegia oxysepala HOM05D006529 ORTHO05D008380 1.6e-64 250.0 192 61.5
Oeu052123.2 Olea europaea HOM05D006529 ORTHO05D008380 1.6e-64 250.0 226 56.2
PSO832G0687 Papaver somniferum HOM05D006529 ORTHO05D008380 2.0e-64 249.6 201 58.2
Psat7g019320 Pisum sativum HOM05D006529 ORTHO05D008380 2.6e-64 249.2 202 63.4
MSTRG.10586 Avicennia marina HOM05D006529 ORTHO05D008380 1.0e-63 247.3 202 61.9
PSO063G6648 Papaver somniferum HOM05D006529 ORTHO05D008380 1.1e-62 243.8 203 57.1
Sed0011062 Sechium edule HOM05D006529 ORTHO05D008380 1.5e-62 243.4 199 59.8
CANSAT56G2962 Cannabis sativa HOM05D006529 ORTHO05D008380 1.9e-62 243.0 191 61.8
CDE05G3131 Ceratophyllum demersum HOM05D006529 ORTHO05D008380 4.2e-62 241.9 199 55.3
CSS0046887 Camellia sinensis var. sinensis HOM05D006529 ORTHO05D008380 1.2e-61 240.4 206 57.8
Migut.K00572 Erythranthe guttata HOM05D006529 ORTHO05D008380 2.7e-61 239.2 203 59.1
SalBow1G6632 Salvia bowleyana HOM05D006529 ORTHO05D008380 2.6e-59 232.6 233 52.8
SGA_v2.0_scaffold210G42089 Striga asiatica HOM05D006529 ORTHO05D008380 1.8e-57 226.5 195 57.4
MELO3C015437.2 Cucumis melo HOM05D006529 ORTHO05D008380 1.2e-56 223.8 205 53.7
CsaV3_UNG050340 Cucumis sativus L. HOM05D006529 ORTHO05D008380 7.2e-54 214.5 135 68.1
TPR.G17281 Trifolium pratense HOM05D006529 ORTHO05D008380 2.2e-50 203.0 142 64.8
Peaxi162Scf00883g01013 Petunia axillaris HOM05D006529 ORTHO05D008380 6.3e-50 201.4 208 51.0
Zm00001eb356780 Zea mays HOM05D006529 ORTHO05D008380 2.4e-49 199.5 172 54.7
FAN26G1500 Fragaria x ananassa HOM05D006529 ORTHO05D008380 1.6e-48 196.8 215 52.6
Lsat_1_v5_gn_7_38121 Lactuca sativa HOM05D006529 ORTHO05D008380 2.3e-47 193.0 148 60.8
Os01g0559300 Oryza sativa ssp. japonica HOM05D006529 ORTHO05D008380 1.5e-46 190.3 177 52.0
Cpa.g.sc78.59 Carica papaya HOM05D006529 ORTHO05D008380 6.1e-45 184.9 195 55.4
Sc18g0001790 Simmondsia chinensis HOM05D006529 ORTHO05D008380 3.7e-42 175.6 155 61.3
Aa31LG3G600 Aethionema arabicum HOM05D006529 ORTHO05D008380 2.4e-41 172.9 170 54.1
CANSAT56G3512 Cannabis sativa HOM05D006529 ORTHO05D008380 2.4e-41 172.9 178 51.1
CsaV3_1G040070 Cucumis sativus L. HOM05D006529 ORTHO05D008380 1.8e-36 156.8 171 49.7
SalBow1G6389 Salvia bowleyana HOM05D006529 ORTHO05D008380 1.7e-34 150.2 135 54.1
FAN26G3434 Fragaria x ananassa HOM05D006529 ORTHO05D008380 3.2e-33 146.0 131 55.0
HanXRQChr03g0061021 Helianthus annuus HOM05D006529 ORTHO05D008380 5.0e-31 138.7 106 60.4
SHI02792 Sapria himalayana HOM05D006529 ORTHO05D008380 6.6e-31 138.3 121 54.5
SMO164G0011 Selaginella moellendorffii HOM05D006529 ORTHO05D008380 1.6e-24 117.1 162 35.8
Sabra06G0122000 Salix brachista HOM05D006529 ORTHO05D008380 3.5e-24 115.9 104 61.5
Lalb_Chr09g0331701 Lupinus albus HOM05D006529 ORTHO05D008380 1.3e-23 114.0 70 65.7
HPP92_005506 Vanilla planifolia HOM05D006529 ORTHO05D008380 2.1e-21 106.7 158 36.7
Nitab4.5_0009098g0020 Nicotiana tabacum HOM05D006529 ORTHO05D008380 3.1e-20 102.8 107 53.3
Sabra06G0121800 Salix brachista HOM05D006529 ORTHO05D008380 1.2e-19 100.9 56 78.6
CBR_g10883 Chara braunii HOM05D006529 ORTHO05D008380 3.4e-19 99.4 162 34.6
FAN27G1398 Fragaria x ananassa HOM05D006529 ORTHO05D008380 3.2e-17 92.8 89 52.8
SHI02791 Sapria himalayana HOM05D006529 ORTHO05D008380 3.1e-12 76.3 49 63.3
Cre11.g467752 Chlamydomonas reinhardtii HOM05D006529 ORTHO05D008380 7.6e-11 71.6 211 28.9
Sopen08g011810 Solanum pennellii HOM05D006529 ORTHO05D008380 6.4e-10 68.6 49 59.2
HanXRQChr03g0061031 Helianthus annuus HOM05D006529 ORTHO05D008380 8.4e-10 68.2 93 44.1
C01p22040 Brassica napus HOM05D006529 ORTHO05D008380 1.3e-07 60.8 62 45.2
BolC1t02133H Brassica oleracea HOM05D006529 ORTHO05D008380 1.3e-07 60.8 62 45.2
Lalb_Chr09g0331711 Lupinus albus HOM05D006529 ORTHO05D008380 2.3e-07 60.1 45 66.7
Solyc08g041690.1 Solanum lycopersicum HOM05D006529 ORTHO05D008380 6.6e-07 58.5 36 66.7
RcHm_v2.0_Chr7g0226351 Rosa chinensis HOM05D006529 ORTHO05D008380 1.5e-06 57.4 66 50.0
PGSC0003DMG400015618 Solanum tuberosum HOM05D006529 ORTHO05D008380 1.5e-06 57.4 83 44.6
Glyma.05G224100 Glycine max HOM05D006529 ORTHO05D008380 1.9e-06 57.0 28 75.0


User provided reference genes

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