Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 1.5e-259 899.0 469 100.0
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 7.5e-235 817.0 467 87.6
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 6.5e-231 803.9 469 88.9
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.0e-223 780.0 469 84.4
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 1.0e-223 780.0 469 84.4
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 3.3e-222 775.0 469 84.0
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 1.9e-190 669.5 447 74.5
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 2.0e-187 659.4 469 71.4
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 6.4e-186 654.4 465 70.8
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 1.1e-185 653.7 464 71.1
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 3.5e-184 648.7 463 71.9
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 2.1e-181 639.4 468 68.6
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 6.9e-180 634.4 463 69.8
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 5.8e-179 631.3 464 69.2
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 7.6e-179 630.9 464 69.8
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 9.9e-179 630.6 445 69.9
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 4.9e-178 628.2 464 69.0
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 4.6e-176 621.7 515 64.3
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 6.0e-176 621.3 465 68.0
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 2.5e-174 615.9 467 65.7
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 8.1e-173 610.9 467 66.4
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 1.8e-172 609.8 465 67.5
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 9.9e-171 604.0 447 68.5
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 1.7e-170 603.2 470 65.3
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 4.2e-169 598.6 449 66.8
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 1.2e-168 597.0 451 66.3
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 1.8e-167 593.2 450 65.1
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 3.0e-167 592.4 466 63.7
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.1e-166 590.5 446 65.5
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 2.5e-166 589.3 453 65.8
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 3.3e-166 589.0 449 66.6
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 5.6e-166 588.2 464 63.6
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 2.1e-165 586.3 446 65.0
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 6.2e-165 584.7 449 66.1
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 1.4e-164 583.6 464 61.6
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 6.9e-164 581.3 464 63.4
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 6.9e-164 581.3 448 64.5
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.2e-163 580.5 464 62.9
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.2e-163 580.5 449 66.1
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 9.9e-163 577.4 465 63.4
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 1.4e-161 573.5 449 64.4
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 4.2e-161 572.0 464 61.9
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 1.2e-160 570.5 464 61.4
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 7.9e-160 567.8 467 62.5
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 4.3e-158 562.0 451 62.7
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.3e-157 560.5 447 63.1
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 3.1e-156 555.8 466 61.8
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 4.0e-156 555.4 466 61.2
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 9.0e-156 554.3 436 64.9
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 1.2e-155 553.9 463 59.8
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 2.6e-155 552.7 436 64.7
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 2.6e-155 552.7 465 59.8
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 3.4e-155 552.4 445 62.2
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 5.8e-155 551.6 452 61.1
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 2.2e-154 549.7 453 61.6
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 3.8e-154 548.9 449 60.8
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 4.9e-154 548.5 453 61.4
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 8.4e-154 547.7 450 60.7
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 1.4e-153 547.0 465 59.8
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 1.9e-153 546.6 453 61.1
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 3.2e-153 545.8 453 61.1
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 2.1e-152 543.1 453 60.9
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 2.1e-152 543.1 485 58.6
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 4.6e-152 542.0 448 60.5
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 4.6e-152 542.0 450 60.7
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 1.0e-151 540.8 449 60.6
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 1.0e-151 540.8 450 60.9
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 1.8e-151 540.0 452 60.8
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 2.3e-151 539.7 456 60.3
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 5.1e-151 538.5 450 59.1
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 1.1e-150 537.3 452 60.8
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 1.1e-150 537.3 469 60.3
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.9e-150 536.6 451 60.3
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 7.4e-150 534.6 447 59.7
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 1.3e-149 533.9 447 59.3
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 3.7e-149 532.3 468 58.3
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 3.7e-149 532.3 465 59.4
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 8.2e-149 531.2 453 58.3
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 9.0e-148 527.7 450 59.6
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 1.2e-147 527.3 447 60.0
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 3.4e-147 525.8 446 61.0
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 1.0e-146 524.2 452 58.0
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 2.7e-144 516.2 448 56.7
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 1.1e-142 510.8 426 60.6
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 5.7e-142 508.4 446 58.1
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 1.8e-140 503.4 449 57.9
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 3.4e-139 499.2 451 57.6
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.2e-138 496.5 452 57.5
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 9.7e-134 481.1 423 56.5
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.7e-133 480.3 429 57.1
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 6.3e-133 478.4 451 53.4
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 5.3e-132 475.3 470 52.6
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 3.8e-130 469.2 467 53.3
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 8.5e-130 468.0 416 58.7
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.1e-129 467.6 453 54.1
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 4.7e-128 462.2 467 52.5
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 1.3e-125 454.1 455 52.7
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 1.1e-124 451.1 455 52.5
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 4.1e-124 449.1 451 52.3
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 6.5e-122 441.8 459 50.5
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.0e-118 430.3 438 51.6
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 4.4e-118 429.1 480 47.7
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 6.5e-114 415.2 456 47.4
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 2.0e-107 393.7 453 48.1
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 2.0e-99 367.1 422 42.9
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 5.6e-97 359.0 376 51.6
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 5.6e-97 359.0 376 51.6
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 5.8e-94 349.0 280 59.6
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 1.7e-93 347.4 284 60.9
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 5.4e-92 342.4 363 52.6
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 1.3e-85 321.2 489 38.2
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 2.4e-84 317.0 444 39.4
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 1.4e-76 291.2 424 40.6
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 5.1e-66 256.1 335 47.5
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 6.4e-61 239.2 478 32.2
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 7.9e-59 232.3 512 31.2
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 3.2e-44 183.7 195 51.8
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 4.6e-43 179.9 363 35.3
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 6.2e-40 169.5 477 27.7
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 2.4e-39 167.5 117 69.2
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 9.0e-39 165.6 127 59.1
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 9.0e-39 165.6 127 59.1
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 3.4e-38 163.7 162 51.2
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 4.5e-38 163.3 124 59.7
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 1.3e-37 161.8 162 50.6
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 1.9e-33 147.9 128 59.4
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 5.7e-33 146.4 230 37.8
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 4.1e-31 140.2 105 61.0
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 1.9e-28 131.3 406 26.1
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 9.4e-28 129.0 217 41.5
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 6.3e-24 116.3 446 22.4
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 5.9e-22 109.8 279 28.7
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 3.3e-17 94.0 170 35.3
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 9.7e-17 92.4 121 39.7
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.9e-12 78.2 66 57.6
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 9.4e-12 75.9 73 50.7
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 2.1e-11 74.7 39 82.1
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 2.1e-11 74.7 38 84.2
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 5.2e-10 70.1 85 47.1
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 5.2e-10 70.1 67 55.2


User provided reference genes

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