Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 1.4e-149 533.1 299 100.0
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 8.6e-136 487.3 297 87.9
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 1.5e-135 486.5 299 88.0
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 7.3e-119 431.0 299 79.3
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.6e-118 429.9 296 76.4
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 8.1e-118 427.6 296 76.4
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 8.1e-118 427.6 296 76.4
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 2.4e-114 416.0 298 76.2
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 3.7e-110 402.1 301 72.4
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 4.0e-109 398.7 302 70.5
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 1.5e-108 396.7 301 74.4
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 2.6e-108 396.0 301 69.1
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 9.9e-108 394.0 302 69.2
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.3e-107 393.7 296 74.7
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 2.9e-107 392.5 303 70.6
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 2.9e-107 392.5 295 74.9
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 1.1e-106 390.6 296 72.0
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 2.4e-106 389.4 297 68.7
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 5.5e-106 388.3 302 67.9
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 1.6e-105 386.7 301 71.4
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 2.1e-105 386.3 305 67.5
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 2.3e-104 382.9 297 70.4
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 6.7e-104 381.3 302 67.5
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 1.9e-103 379.8 304 68.8
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 5.6e-103 378.3 303 68.0
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 2.8e-102 375.9 301 71.4
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 2.8e-102 375.9 301 71.4
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 3.7e-102 375.6 303 68.3
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 3.7e-102 375.6 301 70.8
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 8.2e-102 374.4 302 68.9
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 1.1e-101 374.0 293 65.2
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 3.1e-101 372.5 302 71.2
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 5.3e-101 371.7 297 68.4
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 6.9e-101 371.3 303 65.0
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 6.9e-101 371.3 303 66.7
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 6.9e-101 371.3 303 66.7
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 1.2e-100 370.5 305 68.5
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.5e-100 370.2 303 67.0
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 2.6e-100 369.4 292 72.9
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 4.5e-100 368.6 303 66.7
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 4.5e-100 368.6 298 65.4
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.7e-99 366.7 303 66.3
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 2.9e-99 365.9 299 72.2
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 6.5e-99 364.8 301 64.5
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 6.5e-99 364.8 305 69.2
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 1.4e-98 363.6 298 64.4
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 1.9e-98 363.2 302 66.2
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.9e-98 363.2 302 65.9
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 2.5e-98 362.8 296 64.9
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 3.2e-98 362.5 292 65.4
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 4.2e-98 362.1 304 65.1
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 9.3e-98 360.9 301 69.4
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 1.6e-97 360.1 300 67.7
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 2.1e-97 359.8 291 64.3
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 4.6e-97 358.6 303 66.7
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 1.0e-96 357.5 297 64.0
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 1.8e-96 356.7 294 70.1
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 3.0e-96 355.9 301 68.8
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 5.1e-96 355.1 299 61.5
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 8.7e-96 354.4 304 64.8
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 1.1e-95 354.0 299 63.9
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 1.5e-95 353.6 300 69.0
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 4.3e-95 352.1 303 68.3
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 1.3e-94 350.5 296 65.9
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 2.2e-94 349.7 297 66.7
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 3.7e-94 349.0 301 66.8
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 6.3e-94 348.2 292 63.4
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 2.4e-93 346.3 297 64.3
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 5.3e-93 345.1 292 63.0
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 2.0e-92 343.2 304 62.5
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 4.5e-92 342.0 297 58.9
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 5.9e-92 341.7 304 62.2
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 5.9e-92 341.7 304 65.1
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 1.7e-91 340.1 299 63.5
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 1.7e-91 340.1 304 62.2
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 2.2e-91 339.7 303 64.4
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 2.9e-91 339.3 298 59.4
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 5.0e-91 338.6 296 63.2
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 6.5e-91 338.2 260 68.5
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 8.5e-91 337.8 307 61.9
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 8.5e-91 337.8 294 67.0
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 1.4e-90 337.0 304 61.5
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 3.2e-90 335.9 298 60.1
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 3.2e-90 335.9 294 67.7
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 4.2e-90 335.5 302 64.6
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 2.1e-89 333.2 306 62.7
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 2.1e-89 333.2 307 61.9
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 2.1e-89 333.2 307 61.9
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 4.6e-89 332.0 301 61.8
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 1.8e-88 330.1 303 58.1
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 3.0e-88 329.3 301 60.8
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 6.7e-88 328.2 300 65.7
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 6.7e-88 328.2 294 58.2
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 8.8e-88 327.8 309 57.3
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 1.3e-86 323.9 299 62.9
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 1.7e-86 323.6 270 70.7
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 2.8e-86 322.8 309 63.1
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 8.2e-86 321.2 289 62.6
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 1.4e-85 320.5 279 61.3
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 3.1e-85 319.3 293 62.8
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 6.9e-85 318.2 300 60.7
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 1.2e-84 317.4 296 60.1
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 1.5e-84 317.0 304 63.8
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 1.0e-83 314.3 242 69.4
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 2.2e-83 313.2 352 55.1
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 1.4e-82 310.5 239 70.7
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 4.2e-82 308.9 301 54.5
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 2.3e-80 303.1 301 53.2
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 6.7e-80 301.6 290 57.2
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 1.1e-79 300.8 303 55.4
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 2.0e-79 300.1 301 52.2
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 2.6e-79 299.7 257 64.6
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 2.6e-79 299.7 276 59.4
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 6.3e-78 295.0 315 53.3
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 2.4e-77 293.1 220 69.1
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 3.5e-76 289.3 228 74.1
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 4.7e-73 278.9 288 50.3
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 4.8e-70 268.9 302 52.3
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 3.8e-67 259.2 299 55.5
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 8.0e-65 251.5 276 52.9
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 5.9e-60 235.3 222 58.6
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 8.5e-59 231.5 303 48.5
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 1.0e-56 224.6 313 46.0
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 8.3e-54 214.9 186 61.8
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 5.0e-51 205.7 218 52.8
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 2.8e-49 199.9 198 50.0
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 7.5e-39 165.2 256 38.3
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 1.9e-37 160.6 202 44.6
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 9.2e-37 158.3 280 41.8
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 1.5e-34 151.0 100 74.0
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 1.5e-34 151.0 136 61.0
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.7e-28 130.2 133 60.2
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.7e-28 130.2 133 60.2
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 1.5e-26 124.4 214 37.4
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 1.3e-22 111.3 199 36.2
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 1.3e-22 111.3 200 35.0
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 3.2e-21 106.7 68 69.1
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.1e-20 104.0 66 69.7
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 2.5e-18 97.1 64 73.4
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 1.2e-17 94.7 62 74.2
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 4.0e-16 89.7 79 54.4
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.5e-15 87.8 119 49.6
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 1.4e-13 81.3 95 56.8
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.2e-12 78.2 50 74.0
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 2.3e-11 73.9 43 79.1
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 5.1e-11 72.8 134 47.0
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 6.2e-09 65.9 45 62.2
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.8e-08 64.3 45 62.2
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 3.1e-08 63.5 39 71.8
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 7.6e-07 58.9 53 52.8


User provided reference genes

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