Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A05G030100 Gossypium hirsutum HOM05D006545 ORTHO05D007985 1.9e-34 148.7 79 100.0
Gohir.D05G031500 Gossypium hirsutum HOM05D006545 ORTHO05D007985 1.9e-34 148.7 79 100.0
Gorai.009G031700 Gossypium raimondii HOM05D006545 ORTHO05D007985 1.9e-34 148.7 79 100.0
Thecc.09G088900 Theobroma cacao HOM05D006545 ORTHO05D007985 1.9e-34 148.7 79 100.0
Duzib168G1224 Durio zibethinus HOM05D006545 ORTHO05D007985 1.1e-32 142.9 79 97.5
Duzib150G0099 Durio zibethinus HOM05D006545 ORTHO05D007985 1.4e-32 142.5 79 96.2
Dinv42321 Davidia involucrata HOM05D006545 ORTHO05D007985 9.9e-31 136.3 79 91.1
Gohir.A13G193400 Gossypium hirsutum HOM05D006545 ORTHO05D007985 1.7e-30 135.6 79 91.1
Gohir.D13G199200 Gossypium hirsutum HOM05D006545 ORTHO05D007985 6.4e-30 133.7 79 89.9
Gorai.013G227700 Gossypium raimondii HOM05D006545 ORTHO05D007985 3.2e-29 131.3 79 88.6
Dinv36770 Davidia involucrata HOM05D006545 ORTHO05D007985 4.1e-29 131.0 79 87.3
GSVIVG01015199001 Vitis vinifera HOM05D006545 ORTHO05D007985 7.1e-29 130.2 79 84.8
MSTRG.10562 Avicennia marina HOM05D006545 ORTHO05D007985 9.2e-29 129.8 79 86.1
Migut.L01494 Erythranthe guttata HOM05D006545 ORTHO05D007985 3.5e-28 127.9 79 84.8
Cfa003081 Carpinus fangiana HOM05D000085 ORTHO05D001460 4.6e-28 127.5 79 86.1
PGR102G1056 Punica granatum HOM05D006545 ORTHO05D007985 4.6e-28 127.5 79 87.3
Nn8g38862 Nelumbo nucifera HOM05D006545 ORTHO05D007985 6.0e-28 127.1 79 87.3
Actinidia29903 Actinidia chinensis HOM05D000085 ORTHO05D001460 7.8e-28 126.7 79 83.5
Actinidia19138 Actinidia chinensis HOM05D006545 ORTHO05D007985 1.3e-27 125.9 79 83.5
DCAR_028856 Daucus carota HOM05D006545 ORTHO05D007985 3.0e-27 124.8 74 87.8
DCAR_032235 Daucus carota HOM05D006545 ORTHO05D007985 3.0e-27 124.8 74 87.8
HanXRQChr12g0363181 Helianthus annuus HOM05D006545 ORTHO05D007985 3.0e-27 124.8 79 83.5
Potri.004G215200 Populus trichocarpa HOM05D006545 ORTHO05D007985 3.0e-27 124.8 79 82.3
CiPaw.04G149100 Carya illinoinensis HOM05D006545 ORTHO05D007985 6.6e-27 123.6 79 84.8
Lj4g0002489 Lotus japonicus HOM05D006545 ORTHO05D007985 6.6e-27 123.6 79 84.8
Manes.03G034000 Manihot esculenta HOM05D006545 ORTHO05D007985 6.6e-27 123.6 74 85.1
TAR383G1000 Trochodendron aralioides HOM05D006545 ORTHO05D007985 6.6e-27 123.6 78 83.3
PGSC0003DMG400000279 Solanum tuberosum HOM05D006545 ORTHO05D007985 1.1e-26 122.9 79 83.5
vmacro06292 Vaccinium macrocarpon HOM05D006545 ORTHO05D007985 1.1e-26 122.9 79 79.7
Ciclev10010087m.g Citrus clementina HOM05D006545 ORTHO05D007985 1.5e-26 122.5 79 83.5
Solyc12g008860.3 Solanum lycopersicum HOM05D006545 ORTHO05D007985 1.9e-26 122.1 79 82.3
Sopen12g003790 Solanum pennellii HOM05D006545 ORTHO05D007985 1.9e-26 122.1 79 82.3
CANSAT56G1499 Cannabis sativa HOM05D006545 ORTHO05D007985 3.3e-26 121.3 79 83.5
CANSAT56G4473 Cannabis sativa HOM05D006545 ORTHO05D007985 3.3e-26 121.3 79 83.5
Cc06_g11430 Coffea canephora HOM05D006545 ORTHO05D007985 3.3e-26 121.3 79 78.5
Glyma.13G104200 Glycine max HOM05D006545 ORTHO05D007985 3.3e-26 121.3 79 82.3
Glyma.17G054900 Glycine max HOM05D006545 ORTHO05D007985 3.3e-26 121.3 79 82.3
QL02p062521 Quercus lobata HOM05D006545 ORTHO05D007985 3.3e-26 121.3 78 82.1
Phvul.003G136800 Phaseolus vulgaris HOM05D006545 ORTHO05D007985 4.3e-26 120.9 79 81.0
CiPaw.03G215100 Carya illinoinensis HOM05D006545 ORTHO05D007985 5.6e-26 120.6 79 82.3
CDE06G0764 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 5.6e-26 120.6 79 81.0
CDE07G1614 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 5.6e-26 120.6 79 81.0
Sabra06G0115900 Salix brachista HOM05D006545 ORTHO05D007985 9.6e-26 119.8 79 78.5
unitig_699.g19296 Utricularia gibba HOM05D006545 ORTHO05D007985 9.6e-26 119.8 79 79.7
FvH4_1g07510 Fragaria vesca HOM05D006545 ORTHO05D007985 1.2e-25 119.4 79 81.0
FAN19G0384 Fragaria x ananassa HOM05D006545 ORTHO05D007985 1.2e-25 119.4 79 81.0
FAN23G2021 Fragaria x ananassa HOM05D006545 ORTHO05D007985 1.2e-25 119.4 79 81.0
FAN26G0590 Fragaria x ananassa HOM05D006545 ORTHO05D007985 1.2e-25 119.4 79 81.0
MBI04_g31162_MAGBIO Magnolia biondii HOM05D006545 ORTHO05D007985 1.2e-25 119.4 79 75.9
Sc18g0002090 Simmondsia chinensis HOM05D000085 ORTHO05D001460 1.2e-25 119.4 78 82.1
TWI34G0024 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 1.2e-25 119.4 79 84.8
ClCG03G015590 Citrullus lanatus HOM05D006545 ORTHO05D007985 1.6e-25 119.0 79 74.7
CsaV3_1G040450 Cucumis sativus L. HOM05D006545 ORTHO05D007985 1.6e-25 119.0 79 75.9
MELO3C015473.2 Cucumis melo HOM05D006545 ORTHO05D007985 2.1e-25 118.6 74 77.0
Eucgr.C00895 Eucalyptus grandis HOM05D006545 ORTHO05D007985 2.1e-25 118.6 74 82.4
Nitab4.5_0008523g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 2.1e-25 118.6 79 79.7
Manes.16G101800 Manihot esculenta HOM05D006545 ORTHO05D007985 3.6e-25 117.9 74 83.8
Potri.006G146800 Populus trichocarpa HOM05D006545 ORTHO05D007985 3.6e-25 117.9 79 77.2
TWI63G0169 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 4.7e-25 117.5 79 83.5
EL10Ac8g19212 Beta vulgaris HOM05D006545 ORTHO05D007985 8.1e-25 116.7 79 77.2
ECA240G1755 Erigeron canadensis HOM05D006545 ORTHO05D007985 8.1e-25 116.7 75 78.7
RcHm_v2.0_Chr2g0093401 Rosa chinensis HOM05D006545 ORTHO05D007985 8.1e-25 116.7 79 79.7
Nitab4.5_0000540g0270 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.1e-24 116.3 79 77.2
PSO832G3375 Papaver somniferum HOM05D006545 ORTHO05D007985 1.1e-24 116.3 79 74.7
PSO063G6244 Papaver somniferum HOM05D006545 ORTHO05D007985 1.8e-24 115.5 79 74.7
Lsat_1_v5_gn_7_37040 Lactuca sativa HOM05D006545 ORTHO05D007985 2.4e-24 115.2 75 78.7
Psat4g015120 Pisum sativum HOM05D006545 ORTHO05D007985 2.4e-24 115.2 75 80.0
Medtr4g126270 Medicago truncatula HOM05D000085 ORTHO05D001460 3.1e-24 114.8 79 77.2
unitig_85.g27258 Utricularia gibba HOM05D006545 ORTHO05D007985 3.1e-24 114.8 79 75.9
arahy.Tifrunner.gnm1.ann1.CH1R66 Arachis hypogaea HOM05D006545 ORTHO05D007985 4.0e-24 114.4 79 78.5
arahy.Tifrunner.gnm1.ann1.MQ59WG Arachis hypogaea HOM05D000085 ORTHO05D001460 4.0e-24 114.4 74 81.1
arahy.Tifrunner.gnm1.ann1.S1CX09 Arachis hypogaea HOM05D006545 ORTHO05D007985 4.0e-24 114.4 79 78.5
AUR62029070 Chenopodium quinoa HOM05D006545 ORTHO05D007985 5.2e-24 114.0 78 78.2
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 6.9e-24 113.6 79 77.2
AUR62033964 Chenopodium quinoa HOM05D006545 ORTHO05D007985 9.0e-24 113.2 78 76.9
Os06g0567000 Oryza sativa ssp. japonica HOM05D006545 ORTHO05D007985 9.0e-24 113.2 75 77.3
Atru.chr7.1592 Acer truncatum HOM05D006545 ORTHO05D007985 1.2e-23 112.8 79 78.5
ATR0749G052 Amborella trichopoda HOM05D006545 ORTHO05D007985 1.2e-23 112.8 79 70.9
Ah.09g228260 Amaranthus hybridus HOM05D006545 ORTHO05D007985 2.0e-23 112.1 79 74.7
Zm00001eb277360 Zea mays HOM05D006545 ORTHO05D007985 2.0e-23 112.1 74 77.0
THA.LOC104820022 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 2.6e-23 111.7 75 80.0
Lalb_Chr13g0299701 Lupinus albus HOM05D006545 ORTHO05D007985 3.4e-23 111.3 75 74.7
COL.COLO4_18197 Corchorus olitorius HOM05D002302 ORTHO05D002728 4.4e-23 110.9 68 86.8
Sed0026852 Sechium edule HOM05D006545 ORTHO05D007985 4.4e-23 110.9 79 73.4
Aa31LG2G20830 Aethionema arabicum HOM05D006545 ORTHO05D007985 9.9e-23 109.8 75 78.7
Zm00001eb383910 Zea mays HOM05D006545 ORTHO05D007985 1.3e-22 109.4 75 74.7
Thhalv10026717m.g Eutrema salsugineum HOM05D006545 ORTHO05D007985 1.7e-22 109.0 75 77.3
Nitab4.5_0006552g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.7e-22 109.0 74 78.4
Prupe.7G209400 Prunus persica HOM05D006545 ORTHO05D007985 1.7e-22 109.0 79 77.2
Sp7g27510 Schrenkiella parvula HOM05D006545 ORTHO05D007985 1.7e-22 109.0 75 77.3
AL7G22570 Arabidopsis lyrata HOM05D006545 ORTHO05D007985 2.2e-22 108.6 75 77.3
Carub.0007s1077 Capsella rubella HOM05D006545 ORTHO05D007985 2.2e-22 108.6 75 77.3
Lalb_Chr07g0180851 Lupinus albus HOM05D006545 ORTHO05D007985 2.2e-22 108.6 75 74.7
THA.LOC104814622 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 2.2e-22 108.6 75 76.0
CARHR237610 Cardamine hirsuta HOM05D006545 ORTHO05D007985 2.9e-22 108.2 75 77.3
Aqoxy7G01208 Aquilegia oxysepala HOM05D006545 ORTHO05D007985 3.8e-22 107.8 78 73.1
TPR.G9474 Trifolium pratense HOM05D000085 ORTHO05D001460 3.8e-22 107.8 76 75.0
AT4G29735 Arabidopsis thaliana HOM05D006545 ORTHO05D007985 4.9e-22 107.5 75 76.0
PSO210G2413 Papaver somniferum HOM05D006545 ORTHO05D007985 1.4e-21 105.9 79 72.2
MD15G1207400 Malus domestica HOM05D006545 ORTHO05D007985 2.4e-21 105.1 79 69.6
MD02G1079700 Malus domestica HOM05D006545 ORTHO05D007985 3.2e-21 104.8 75 72.0
Nitab4.5_0004526g0070 Nicotiana tabacum HOM05D006545 ORTHO05D007985 4.2e-21 104.4 63 87.3
PSO210G4511 Papaver somniferum HOM05D006545 ORTHO05D007985 4.2e-21 104.4 79 69.6
TAR624G0377 Trochodendron aralioides HOM05D002302 ORTHO05D002728 7.1e-21 103.6 68 79.4
BcaNung00485 Brassica carinata HOM05D006545 ORTHO05D007985 9.3e-21 103.2 75 73.3
A03p59030 Brassica napus HOM05D006545 ORTHO05D007985 1.2e-20 102.8 75 73.3
C03p89150 Brassica napus HOM05D006545 ORTHO05D007985 1.2e-20 102.8 75 74.7
BcaC01g01182 Brassica carinata HOM05D006545 ORTHO05D007985 1.6e-20 102.4 75 74.7
A01p08390 Brassica napus HOM05D000125 ORTHO05D000120 1.0e-19 99.8 75 72.0
BraA01t00787Z Brassica rapa HOM05D000125 ORTHO05D000120 1.0e-19 99.8 75 72.0
Mapoly0003s0235 Marchantia polymorpha HOM05D006545 ORTHO05D007985 3.0e-19 98.2 79 67.1
FAN26G2289 Fragaria x ananassa HOM05D006545 ORTHO05D007985 1.5e-18 95.9 65 76.9
Nitab4.5_0004223g0010 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.9e-18 95.5 63 77.8
SalBow5G5008 Salvia bowleyana HOM05D006545 ORTHO05D007985 5.6e-18 94.0 62 75.8
BcaC09g51752 Brassica carinata HOM05D006545 ORTHO05D007985 9.6e-18 93.2 75 66.7
C07p57080 Brassica napus HOM05D006545 ORTHO05D007985 1.6e-17 92.4 63 77.8
Pp3c11_23220 Physcomitrium patens HOM05D006545 ORTHO05D007985 1.6e-17 92.4 72 69.4
SMO361G0088 Selaginella moellendorffii HOM05D006545 ORTHO05D007985 1.6e-17 92.4 75 62.7
BraA03t14963Z Brassica rapa HOM05D006545 ORTHO05D007985 3.6e-17 91.3 97 57.7
BcaC09g52224 Brassica carinata HOM05D006545 ORTHO05D007985 4.8e-17 90.9 63 77.8
HPP92_008778 Vanilla planifolia HOM05D006545 ORTHO05D007985 6.2e-17 90.5 63 73.0
BolC7t46179H Brassica oleracea HOM05D006545 ORTHO05D007985 1.1e-16 89.7 101 55.4
HanXRQChr12g0377121 Helianthus annuus HOM05D006545 ORTHO05D007985 4.0e-16 87.8 56 82.1
C01p09720 Brassica napus HOM05D006545 ORTHO05D007985 2.6e-15 85.1 97 55.7
Nitab4.5_0000095g0160 Nicotiana tabacum HOM05D006545 ORTHO05D007985 4.5e-15 84.3 74 62.2
C01p09580 Brassica napus HOM05D000125 ORTHO05D007985 8.4e-14 80.1 63 71.4
Rhsim03G0232100 Rhododendron simsii HOM05D000004 ORTHO05D007985 1.8e-11 72.4 76 57.9
C01p09620 Brassica napus HOM05D006545 ORTHO05D007985 2.1e-09 65.5 95 49.5
Lj7C676T8 Lonicera japonica HOM05D006545 ORTHO05D007985 3.7e-09 64.7 37 86.5
A08p19550 Brassica napus HOM05D006545 ORTHO05D007985 6.2e-09 63.9 46 71.7
BcaB03g12615 Brassica carinata HOM05D006545 ORTHO05D007985 1.1e-08 63.2 47 66.0
Haze_25916 Corylus avellana HOM05D005251 ORTHO05D006680 2.0e-07 58.9 32 84.4
Pp3c7_2400 Physcomitrium patens HOM05D006545 ORTHO05D007985 5.8e-07 57.4 42 71.4
Actinidia25251 Actinidia chinensis HOM05D006545 ORTHO05D007985 1.3e-06 56.2 46 71.7
Rhsim05G0059100 Rhododendron simsii HOM05D006545 ORTHO05D007985 6.4e-06 53.9 37 70.3


User provided reference genes

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