Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 7.9e-291 1003.0 503 100.0
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 8.0e-243 843.6 506 86.2
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 8.3e-232 807.0 507 80.1
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.4e-231 806.2 507 80.1
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 4.5e-230 801.2 507 79.7
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 1.4e-218 763.1 546 73.6
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 7.5e-217 757.3 481 78.4
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 1.3e-216 756.5 513 76.0
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 4.9e-216 754.6 542 73.1
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.1e-215 753.4 541 73.0
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 1.9e-215 752.7 518 73.9
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 1.9e-215 752.7 530 73.2
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 2.7e-214 748.8 519 75.1
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.7e-214 748.8 524 73.1
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 3.5e-214 748.4 540 72.8
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 2.3e-213 745.7 523 74.2
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 3.9e-213 745.0 532 72.4
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 8.6e-213 743.8 512 73.0
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 2.5e-212 742.3 519 73.2
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.6e-211 739.6 529 73.0
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 4.0e-210 734.9 514 72.6
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 5.2e-210 734.6 536 70.9
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 8.9e-210 733.8 518 72.0
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 1.5e-209 733.0 538 71.2
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 3.4e-209 731.9 510 73.7
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 4.4e-209 731.5 454 79.3
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 5.8e-209 731.1 423 83.7
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 5.8e-209 731.1 493 74.8
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 5.8e-209 731.1 516 72.1
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 5.8e-209 731.1 553 70.2
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 7.5e-209 730.7 532 72.2
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 9.8e-209 730.3 541 70.6
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 2.2e-208 729.2 462 77.9
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 2.2e-208 729.2 541 70.8
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 3.7e-208 728.4 487 75.4
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 2.4e-207 725.7 539 70.9
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 3.2e-207 725.3 518 72.2
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 9.2e-207 723.8 528 72.7
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 6.0e-206 721.1 520 71.0
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 2.3e-205 719.2 541 69.5
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 1.1e-204 716.8 500 71.0
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 5.6e-204 714.5 547 67.3
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 7.3e-204 714.1 513 72.5
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.6e-203 713.0 515 69.9
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 3.6e-203 711.8 503 72.0
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 3.6e-203 711.8 503 72.0
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 4.7e-203 711.4 544 68.9
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 8.1e-203 710.7 506 71.5
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 8.1e-203 710.7 506 71.5
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 8.1e-203 710.7 524 70.2
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 5.2e-202 708.0 508 70.7
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 5.2e-202 708.0 537 68.3
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 5.2e-202 708.0 515 69.7
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 8.9e-202 707.2 504 72.6
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 8.9e-202 707.2 505 71.5
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 1.2e-201 706.8 545 68.8
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 2.6e-201 705.7 493 73.8
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 2.6e-201 705.7 524 71.0
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 5.8e-201 704.5 500 72.2
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 5.8e-201 704.5 505 71.9
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 5.8e-201 704.5 505 71.9
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 7.6e-201 704.1 513 70.6
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 1.3e-200 703.4 493 72.2
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 1.3e-200 703.4 509 71.3
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 1.3e-200 703.4 509 71.3
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 1.7e-200 703.0 536 70.5
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 2.2e-200 702.6 509 71.3
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 8.4e-200 700.7 491 71.7
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 1.4e-199 699.9 521 69.9
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 1.4e-199 699.9 521 69.7
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 1.9e-199 699.5 452 74.8
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 2.4e-199 699.1 493 72.8
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 4.1e-199 698.4 522 69.5
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 5.4e-199 698.0 495 74.9
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 7.1e-199 697.6 471 74.9
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 1.6e-198 696.4 461 76.6
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 2.3e-197 692.6 500 71.8
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 2.3e-197 692.6 498 69.3
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 3.9e-197 691.8 474 71.1
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 1.9e-196 689.5 422 78.0
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.6e-195 686.4 528 66.7
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 4.0e-194 681.8 506 67.8
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.6e-193 679.1 437 74.1
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 2.2e-192 676.0 465 71.0
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 6.4e-192 674.5 464 71.8
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 8.4e-192 674.1 499 67.9
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 1.9e-191 672.9 533 66.8
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 7.1e-191 671.0 585 63.1
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.6e-190 669.8 515 69.7
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 3.5e-190 668.7 521 66.8
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 4.6e-190 668.3 421 77.0
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.6e-190 668.3 513 69.4
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.0e-189 667.2 513 69.4
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 1.0e-189 667.2 514 65.6
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 1.9e-188 662.9 587 62.7
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 2.5e-188 662.5 488 71.1
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 5.6e-188 661.4 419 76.4
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 5.6e-188 661.4 598 59.9
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 5.6e-188 661.4 503 66.2
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.8e-187 659.1 472 72.9
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.8e-186 656.4 513 69.4
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 1.2e-185 653.7 498 69.3
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 4.5e-185 651.7 476 69.3
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 2.9e-184 649.0 422 74.2
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 7.1e-183 644.4 498 70.5
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 1.2e-177 627.1 598 60.0
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 1.7e-176 623.2 423 72.6
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 1.2e-174 617.1 525 62.5
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 3.5e-174 615.5 541 62.8
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 6.0e-174 614.8 424 69.1
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 5.1e-173 611.7 455 71.4
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 2.8e-171 605.9 366 76.0
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 1.1e-167 594.0 530 61.3
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 9.3e-167 590.9 560 61.2
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 1.9e-164 583.2 426 64.1
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 7.4e-164 581.3 569 58.0
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.6e-163 580.1 465 66.2
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 1.1e-162 577.4 420 68.6
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 4.1e-162 575.5 458 67.5
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 5.3e-162 575.1 470 61.3
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 6.9e-162 574.7 554 60.3
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 2.6e-161 572.8 472 64.8
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.4e-161 572.4 437 62.2
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 1.0e-160 570.9 353 78.8
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 3.8e-160 568.9 511 57.3
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 4.2e-159 565.5 516 59.7
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 5.5e-159 565.1 418 67.2
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 4.6e-158 562.0 424 67.7
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 7.9e-158 561.2 469 61.6
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 1.4e-154 550.4 484 59.9
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 2.5e-151 539.7 364 72.8
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 1.4e-149 533.9 362 74.9
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 5.7e-148 528.5 476 61.8
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 1.7e-147 526.9 399 69.7
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 9.1e-146 521.2 537 56.4
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 5.9e-145 518.5 399 68.7
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 1.3e-144 517.3 377 71.6
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 2.5e-143 513.1 490 57.1
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 5.5e-143 511.9 454 62.3
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 5.5e-143 511.9 426 64.6
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 1.2e-142 510.8 355 70.4
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 5.2e-141 505.4 425 61.6
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 9.4e-135 484.6 350 70.0
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 4.1e-130 469.2 431 58.5
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 4.5e-129 465.7 378 65.9
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.1e-122 444.5 395 61.8
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 7.0e-122 441.8 367 59.9
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 2.2e-115 420.2 277 75.1
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 3.6e-102 376.3 252 80.2
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 2.2e-99 367.1 210 82.9
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 4.4e-92 342.8 435 44.8
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 8.1e-78 295.4 294 58.2
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 4.0e-77 293.1 149 90.6
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.4e-74 284.6 295 57.6
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 5.4e-66 256.1 193 61.7
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.8e-64 251.1 444 40.3
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.3e-62 245.0 155 77.4
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 8.1e-62 242.3 400 35.0
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 9.0e-61 238.8 331 48.0
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 2.6e-60 237.3 160 64.4
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 3.3e-55 220.3 466 33.5
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.2e-52 211.8 238 55.5
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.4e-45 187.6 104 81.7
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 1.0e-19 102.4 185 33.0
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 2.9e-19 100.9 49 91.8
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 2.5e-18 97.8 54 83.3
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 3.2e-18 97.4 213 31.9
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 1.2e-17 95.5 50 86.0
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 9.7e-15 85.9 126 47.6
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 4.5e-12 77.0 106 44.3
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 4.2e-10 70.5 39 79.5
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 2.1e-09 68.2 63 50.8
Lalb_Chr11g0074511 Lupinus albus HOM05D004042 ORTHO05D004552 4.0e-08 63.9 120 40.0
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 2.0e-07 61.6 42 69.0
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 1.3e-06 58.9 40 70.0


User provided reference genes

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