Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G084900 Theobroma cacao HOM05D002165 ORTHO05D001531 2.3e-41 171.8 86 100.0
COL.COLO4_05484 Corchorus olitorius HOM05D002165 ORTHO05D001531 7.0e-30 133.7 88 80.7
Gohir.D13G184400 Gossypium hirsutum HOM05D002165 ORTHO05D001531 1.3e-28 129.4 88 77.3
Gorai.013G210100 Gossypium raimondii HOM05D002165 ORTHO05D001531 1.3e-28 129.4 88 77.3
Duzib128G1662 Durio zibethinus HOM05D002165 ORTHO05D001531 2.9e-28 128.3 77 85.7
Gohir.A13G177800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 3.2e-27 124.8 86 76.7
Thecc.05G329700 Theobroma cacao HOM05D002165 ORTHO05D001531 4.7e-26 120.9 86 73.3
Gohir.D13G116800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 2.5e-19 98.6 83 69.9
Gorai.013G131300 Gossypium raimondii HOM05D002165 ORTHO05D001531 2.5e-19 98.6 83 69.9
Gohir.A13G113800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 1.8e-17 92.4 83 65.1
Atru.chr12.1534 Acer truncatum HOM05D002165 ORTHO05D001531 2.4e-14 82.0 84 58.3
Atru.chr12.1536 Acer truncatum HOM05D002165 ORTHO05D001531 2.4e-14 82.0 84 58.3
Cpa.g.sc48.225 Carica papaya HOM05D002165 ORTHO05D001531 2.3e-12 75.5 79 58.2
BcaC01g04301 Brassica carinata HOM05D002165 ORTHO05D001531 2.9e-12 75.1 84 56.0
C03p41790 Brassica napus HOM05D002165 ORTHO05D001531 2.9e-12 75.1 84 56.0
BolC3t16462H Brassica oleracea HOM05D002165 ORTHO05D001531 2.9e-12 75.1 84 56.0
BcaB04g19240 Brassica carinata HOM05D002165 ORTHO05D001531 8.6e-12 73.6 84 54.8
A03p34320 Brassica napus HOM05D002165 ORTHO05D001531 8.6e-12 73.6 84 54.8
BraA03t12608Z Brassica rapa HOM05D002165 ORTHO05D001531 8.6e-12 73.6 84 54.8
Potri.005G002500 Populus trichocarpa HOM05D002165 ORTHO05D001531 1.1e-11 73.2 92 51.1
Potri.005G002600 Populus trichocarpa HOM05D002165 ORTHO05D001531 1.1e-11 73.2 92 51.1
AL3G16610 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 1.5e-11 72.8 85 54.1
Eucgr.H01321 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.5e-11 72.8 78 55.1
Thhalv10005460m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 1.5e-11 72.8 76 56.6
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 1.9e-11 72.4 80 58.8
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 1.9e-11 72.4 80 58.8
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 1.9e-11 72.4 80 58.8
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 1.9e-11 72.4 80 58.8
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 1.9e-11 72.4 80 58.8
THA.LOC104818754 Tarenaya hassleriana HOM05D002165 ORTHO05D001531 1.9e-11 72.4 81 54.3
Sabra05G0014100 Salix brachista HOM05D002165 ORTHO05D001531 2.5e-11 72.0 92 50.0
BcaB04g19717 Brassica carinata HOM05D002165 ORTHO05D001531 3.3e-11 71.6 76 57.9
BcaC09g47857 Brassica carinata HOM05D002165 ORTHO05D001531 3.3e-11 71.6 78 57.7
BcaNung03681 Brassica carinata HOM05D002165 ORTHO05D001531 3.3e-11 71.6 80 58.8
C07p41550 Brassica napus HOM05D002165 ORTHO05D001531 3.3e-11 71.6 80 58.8
BolC1t05659H Brassica oleracea HOM05D002165 ORTHO05D001531 3.3e-11 71.6 78 57.7
BolC7t44687H Brassica oleracea HOM05D002165 ORTHO05D001531 3.3e-11 71.6 80 58.8
BraA01t04469Z Brassica rapa HOM05D002165 ORTHO05D001531 3.3e-11 71.6 78 57.7
Ciclev10013222m.g Citrus clementina HOM05D002165 ORTHO05D001531 3.3e-11 71.6 82 53.7
AL6G38560 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 4.2e-11 71.2 77 57.1
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 4.2e-11 71.2 80 55.0
Manes.08G107400 Manihot esculenta HOM05D002165 ORTHO05D001531 4.2e-11 71.2 81 55.6
CARHR080310 Cardamine hirsuta HOM05D002165 ORTHO05D001531 5.5e-11 70.9 85 52.9
Potri.013G002000 Populus trichocarpa HOM05D002165 ORTHO05D001531 5.5e-11 70.9 90 53.3
BcaNung03907 Brassica carinata HOM05D002165 ORTHO05D001531 7.2e-11 70.5 80 57.5
A06p36950 Brassica napus HOM05D002165 ORTHO05D001531 7.2e-11 70.5 80 57.5
BraA06t26620Z Brassica rapa HOM05D002165 ORTHO05D001531 7.2e-11 70.5 80 57.5
Carub.0003s0521 Capsella rubella HOM05D002165 ORTHO05D001531 7.2e-11 70.5 79 55.7
Potri.013G001800 Populus trichocarpa HOM05D002165 ORTHO05D001531 7.2e-11 70.5 90 53.3
Potri.013G001900 Populus trichocarpa HOM05D002165 ORTHO05D001531 7.2e-11 70.5 90 53.3
A01p30200 Brassica napus HOM05D002165 ORTHO05D001531 9.5e-11 70.1 84 52.4
Ciclev10010714m.g Citrus clementina HOM05D002165 ORTHO05D001531 9.5e-11 70.1 85 50.6
Ciclev10013220m.g Citrus clementina HOM05D002165 ORTHO05D001531 9.5e-11 70.1 82 50.0
Eucgr.H01331 Eucalyptus grandis HOM05D002165 ORTHO05D001531 9.5e-11 70.1 75 53.3
Ciclev10013801m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.6e-10 69.3 82 56.1
Eucgr.H01327 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.6e-10 69.3 78 55.1
Eucgr.H01329 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.6e-10 69.3 78 55.1
FAN02G1676 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.1e-10 68.9 78 55.1
FAN09G0584 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.1e-10 68.9 78 55.1
BcaC05g29776 Brassica carinata HOM05D002165 ORTHO05D001531 2.8e-10 68.6 82 53.7
Eucgr.H01324 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.8e-10 68.6 77 54.5
Sp3g04720 Schrenkiella parvula HOM05D002165 ORTHO05D001531 2.8e-10 68.6 84 52.4
Carub.0006s2437 Capsella rubella HOM05D002165 ORTHO05D001531 3.6e-10 68.2 77 55.8
Eucgr.H01326 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.6e-10 68.2 84 51.2
FvH4_6g08530 Fragaria vesca HOM05D002165 ORTHO05D001531 3.6e-10 68.2 78 53.8
FAN14G5435 Fragaria x ananassa HOM05D002165 ORTHO05D001531 3.6e-10 68.2 78 53.8
BcaB07g29941 Brassica carinata HOM05D002165 ORTHO05D001531 4.7e-10 67.8 80 56.2
Eucgr.H01325 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.7e-10 67.8 86 52.3
Thhalv10021847m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 4.7e-10 67.8 84 52.4
FAN05G4164 Fragaria x ananassa HOM05D002165 ORTHO05D001531 4.7e-10 67.8 78 53.8
MELO3C025017.2 Cucumis melo HOM05D002165 ORTHO05D001531 6.1e-10 67.4 81 51.9
Eucgr.H01333 Eucalyptus grandis HOM05D002165 ORTHO05D001531 6.1e-10 67.4 75 52.0
Sed0022046 Sechium edule HOM05D002165 ORTHO05D001531 6.1e-10 67.4 77 50.6
AT3G05858 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 8.0e-10 67.0 85 50.6
BcaC04g23632 Brassica carinata HOM05D002165 ORTHO05D001531 8.0e-10 67.0 80 55.0
A09p05720 Brassica napus HOM05D002165 ORTHO05D001531 8.0e-10 67.0 80 55.0
C09p06310 Brassica napus HOM05D002165 ORTHO05D001531 8.0e-10 67.0 80 55.0
BolC9t53551H Brassica oleracea HOM05D002165 ORTHO05D001531 8.0e-10 67.0 80 55.0
BraA09t36213Z Brassica rapa HOM05D002165 ORTHO05D001531 8.0e-10 67.0 80 55.0
CARHR186860 Cardamine hirsuta HOM05D002165 ORTHO05D001531 8.0e-10 67.0 75 53.3
ClCG00G002170 Citrullus lanatus HOM05D002165 ORTHO05D001531 8.0e-10 67.0 82 50.0
ClCG08G002310 Citrullus lanatus HOM05D002165 ORTHO05D001531 8.0e-10 67.0 82 50.0
ClCG08G002360 Citrullus lanatus HOM05D002165 ORTHO05D001531 8.0e-10 67.0 82 50.0
Sabra13G0001400 Salix brachista HOM05D002165 ORTHO05D001531 8.0e-10 67.0 88 50.0
BcaC05g30083 Brassica carinata HOM05D002165 ORTHO05D001531 1.0e-09 66.6 82 52.4
C05p61420 Brassica napus HOM05D002165 ORTHO05D001531 1.0e-09 66.6 82 52.4
BolC5t34800H Brassica oleracea HOM05D002165 ORTHO05D001531 1.0e-09 66.6 82 52.4
Aa31LG5G16230 Aethionema arabicum HOM05D002165 ORTHO05D001531 1.4e-09 66.2 79 54.4
Eucgr.H01330 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.4e-09 66.2 78 53.8
Eucgr.H01334 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.8e-09 65.9 80 56.2
Phvul.003G124200 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 1.8e-09 65.9 84 50.0
Aqoxy5G02840 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 2.3e-09 65.5 76 51.3
DCAR_001884 Daucus carota HOM05D002165 ORTHO05D001531 2.3e-09 65.5 66 57.6
Glyma.17G042500 Glycine max HOM05D002165 ORTHO05D001531 2.3e-09 65.5 84 51.2
MELO3C025020.2 Cucumis melo HOM05D002165 ORTHO05D001531 3.0e-09 65.1 81 46.9
CsaV3_6G002640 Cucumis sativus L. HOM05D002165 ORTHO05D001531 3.0e-09 65.1 81 46.9
Eucgr.H01332 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.0e-09 65.1 84 48.8
MD04G1186400 Malus domestica HOM05D002165 ORTHO05D001531 3.0e-09 65.1 76 51.3
Aa31LG11G9930 Aethionema arabicum HOM05D002165 ORTHO05D001531 4.0e-09 64.7 73 53.4
A05p42200 Brassica napus HOM05D002165 ORTHO05D001531 4.0e-09 64.7 82 51.2
BraA05t22939Z Brassica rapa HOM05D002165 ORTHO05D001531 4.0e-09 64.7 82 51.2
CsaV3_6G002670 Cucumis sativus L. HOM05D002165 ORTHO05D001531 4.0e-09 64.7 79 50.6
Eucgr.H01328 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.0e-09 64.7 75 53.3
Glyma.10G143100 Glycine max HOM05D008018 ORTHO05D001531 4.0e-09 64.7 81 53.1
Manes.15G075800 Manihot esculenta HOM05D002165 ORTHO05D001531 4.0e-09 64.7 82 51.2
PGR083G0845 Punica granatum HOM05D002165 ORTHO05D001531 5.2e-09 64.3 90 46.7
Sabra13G0001300 Salix brachista HOM05D002165 ORTHO05D001531 5.2e-09 64.3 90 46.7
Sed0009609 Sechium edule HOM05D002165 ORTHO05D001531 5.2e-09 64.3 76 51.3
Thecc.05G316300 Theobroma cacao HOM05D002165 ORTHO05D001531 5.2e-09 64.3 99 43.4
TAR633G1086 Trochodendron aralioides HOM05D002165 ORTHO05D001531 5.2e-09 64.3 75 50.7
MELO3C015240.2 Cucumis melo HOM05D002165 ORTHO05D001531 6.8e-09 63.9 86 47.7
CsaV3_1G038050 Cucumis sativus L. HOM05D002165 ORTHO05D001531 6.8e-09 63.9 86 47.7
Prupe.6G304300 Prunus persica HOM05D002165 ORTHO05D001531 8.9e-09 63.5 79 51.9
CsaV3_6G002630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 1.5e-08 62.8 82 47.6
Sed0026735 Sechium edule HOM05D002165 ORTHO05D001531 1.5e-08 62.8 73 46.6
Glyma.20G091600 Glycine max HOM05D008018 ORTHO05D001531 3.4e-08 61.6 83 48.2
Glyma.20G091800 Glycine max HOM05D008018 ORTHO05D001531 3.4e-08 61.6 83 48.2
TWI12G1307 Tripterygium wilfordii HOM05D002165 ORTHO05D001531 3.4e-08 61.6 95 46.3
Glyma.10G143000 Glycine max HOM05D008018 ORTHO05D001531 4.4e-08 61.2 81 50.6
Glyma.13G117400 Glycine max HOM05D002165 ORTHO05D001531 4.4e-08 61.2 86 51.2
Cc02_g35880 Coffea canephora HOM05D002165 ORTHO05D001531 5.7e-08 60.8 71 56.3
MELO3C025018.2 Cucumis melo HOM05D002165 ORTHO05D001531 5.7e-08 60.8 82 43.9
Sed0005500 Sechium edule HOM05D002165 ORTHO05D001531 5.7e-08 60.8 77 48.1
Migut.N00975 Erythranthe guttata HOM05D002165 ORTHO05D001531 7.5e-08 60.5 66 54.5
Glyma.20G091700 Glycine max HOM05D008018 ORTHO05D001531 7.5e-08 60.5 82 51.2
DCAR_001885 Daucus carota HOM05D002165 ORTHO05D001531 9.8e-08 60.1 65 53.8
QL03p011025 Quercus lobata HOM05D016210 ORTHO05D001531 9.8e-08 60.1 71 52.1
Prupe.6G304200 Prunus persica HOM05D002165 ORTHO05D001531 1.3e-07 59.7 79 50.6
Ciclev10013684m.g Citrus clementina HOM05D002165 ORTHO05D001531 2.8e-07 58.5 82 47.6
Eucgr.H01323 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.8e-07 58.5 64 53.1
RcHm_v2.0_Chr1g0321401 Rosa chinensis HOM05D002165 ORTHO05D001531 2.8e-07 58.5 78 48.7
TAR362G0276 Trochodendron aralioides HOM05D002165 ORTHO05D001531 2.8e-07 58.5 80 50.0
GSVIVG01017705001 Vitis vinifera HOM05D002165 ORTHO05D001531 2.8e-07 58.5 76 52.6
GSVIVG01017706001 Vitis vinifera HOM05D002165 ORTHO05D001531 2.8e-07 58.5 76 52.6
Glyma.10G143200 Glycine max HOM05D008018 ORTHO05D001531 3.7e-07 58.2 82 51.2
Manes.03G213400 Manihot esculenta HOM05D002165 ORTHO05D001531 3.7e-07 58.2 82 43.9
RcHm_v2.0_Chr3g0458591 Rosa chinensis HOM05D002165 ORTHO05D001531 3.7e-07 58.2 71 49.3
GSVIVG01017707001 Vitis vinifera HOM05D002165 ORTHO05D001531 3.7e-07 58.2 76 55.3
MELO3C025021.2 Cucumis melo HOM05D002165 ORTHO05D001531 4.9e-07 57.8 82 43.9
Lalb_Chr21g0310041 Lupinus albus HOM05D008018 ORTHO05D001531 4.9e-07 57.8 85 49.4
Potri.010G003900 Populus trichocarpa HOM05D002165 ORTHO05D001531 4.9e-07 57.8 87 49.4
Phvul.007G205400 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 6.3e-07 57.4 82 50.0
Phvul.007G205600 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 6.3e-07 57.4 82 50.0
QL03p011084 Quercus lobata HOM05D016210 ORTHO05D001531 6.3e-07 57.4 71 50.7
GSVIVG01017704001 Vitis vinifera HOM05D002165 ORTHO05D001531 6.3e-07 57.4 76 51.3
AT5G26620 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 8.3e-07 57.0 59 55.9
DCAR_001887 Daucus carota HOM05D002165 ORTHO05D001531 1.1e-06 56.6 73 52.1
Sed0011742 Sechium edule HOM05D002165 ORTHO05D001531 1.1e-06 56.6 81 45.7
Actinidia17737 Actinidia chinensis HOM05D002165 ORTHO05D001531 1.4e-06 56.2 71 52.1
DCAR_002292 Daucus carota HOM05D002165 ORTHO05D001531 1.4e-06 56.2 81 49.4
Phvul.007G205300 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 1.4e-06 56.2 85 48.2
Sc16g0009410 Simmondsia chinensis HOM05D002165 ORTHO05D001531 1.4e-06 56.2 91 51.6
DCAR_001886 Daucus carota HOM05D002165 ORTHO05D001531 2.4e-06 55.5 65 52.3
MD13G1137400 Malus domestica HOM05D002165 ORTHO05D001531 2.4e-06 55.5 73 47.9
Nn3g21955 Nelumbo nucifera HOM05D002165 ORTHO05D001531 2.4e-06 55.5 77 49.4
Psat4g020920 Pisum sativum HOM05D002165 ORTHO05D001531 2.4e-06 55.5 76 44.7
Glyma.20G091900 Glycine max HOM05D008018 ORTHO05D001531 3.1e-06 55.1 85 45.9
Lj5g0006453 Lotus japonicus HOM05D008018 ORTHO05D001531 3.1e-06 55.1 84 42.9
Lj5g0009947 Lotus japonicus HOM05D008018 ORTHO05D001531 3.1e-06 55.1 84 42.9
ClCG03G017890 Citrullus lanatus HOM05D002165 ORTHO05D001531 4.1e-06 54.7 89 44.9
DCAR_002291 Daucus carota HOM05D002165 ORTHO05D001531 4.1e-06 54.7 65 50.8
Eucgr.H01322 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.1e-06 54.7 74 45.9
Eucgr.L03553 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.1e-06 54.7 74 45.9
MD16G1133300 Malus domestica HOM05D002165 ORTHO05D001531 4.1e-06 54.7 73 47.9
Peaxi162Scf00194g00002 Petunia axillaris HOM05D002165 ORTHO05D001531 4.1e-06 54.7 67 50.7
Sabra13G0005300 Salix brachista HOM05D002165 ORTHO05D001531 4.1e-06 54.7 90 41.1
CiPaw.02G068700 Carya illinoinensis HOM05D002165 ORTHO05D001531 5.4e-06 54.3 83 42.2
MELO3C006762.2 Cucumis melo HOM05D002165 ORTHO05D001531 5.4e-06 54.3 83 44.6
CsaV3_3G015630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 7.0e-06 53.9 38 65.8
Migut.B00883 Erythranthe guttata HOM05D002165 ORTHO05D001531 7.0e-06 53.9 69 52.2
Medtr7g111500 Medicago truncatula HOM05D008018 ORTHO05D001531 7.0e-06 53.9 83 43.4
Phvul.009G221100 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 7.0e-06 53.9 82 40.2
arahy.Tifrunner.gnm1.ann1.RMBA11 Arachis hypogaea HOM05D008018 ORTHO05D001531 9.2e-06 53.5 79 44.3
Lalb_Chr02g0147521 Lupinus albus HOM05D008018 ORTHO05D001531 9.2e-06 53.5 85 47.1
Nitab4.5_0002516g0010 Nicotiana tabacum HOM05D002165 ORTHO05D001531 9.2e-06 53.5 66 48.5
PSO761G0534 Papaver somniferum HOM05D002165 ORTHO05D001531 9.2e-06 53.5 89 43.8


User provided reference genes

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