Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G077300 Theobroma cacao HOM05D003405 ORTHO05D003920 6.8e-110 400.6 192 100.0
Gohir.A05G385400 Gossypium hirsutum HOM05D003405 ORTHO05D003920 8.0e-26 121.3 66 86.4
Gorai.012G034400 Gossypium raimondii HOM05D003405 ORTHO05D003920 8.0e-26 121.3 66 86.4
COL.COLO4_35734 Corchorus olitorius HOM05D003405 ORTHO05D003920 2.3e-25 119.8 66 84.8
Gohir.D04G022600 Gossypium hirsutum HOM05D003405 ORTHO05D003920 4.0e-25 119.0 66 84.8
Thecc.01G131300 Theobroma cacao HOM05D003405 ORTHO05D003920 5.2e-25 118.6 66 83.3
TWI73G0135 Tripterygium wilfordii HOM05D003405 ORTHO05D003920 1.1e-22 110.9 66 75.8
MD12G1093200 Malus domestica HOM05D003405 ORTHO05D003920 2.4e-22 109.8 66 75.8
MD14G1085200 Malus domestica HOM05D003405 ORTHO05D003920 2.4e-22 109.8 66 75.8
PGR083G0802 Punica granatum HOM05D003405 ORTHO05D003920 2.4e-22 109.8 65 75.4
CiPaw.08G138300 Carya illinoinensis HOM05D003405 ORTHO05D003920 4.1e-22 109.0 66 74.2
Dinv34758 Davidia involucrata HOM05D003405 ORTHO05D003920 4.1e-22 109.0 66 75.8
Dinv40394 Davidia involucrata HOM05D003405 ORTHO05D003920 4.1e-22 109.0 66 74.2
Dinv32930 Davidia involucrata HOM05D003405 ORTHO05D003920 5.4e-22 108.6 66 75.8
TAR376G0111 Trochodendron aralioides HOM05D003405 ORTHO05D003920 7.0e-22 108.2 66 72.7
CSS0031696 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 1.6e-21 107.1 65 75.4
CSS0045191 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 1.6e-21 107.1 65 75.4
Haze_21718 Corylus avellana HOM05D003405 ORTHO05D003920 1.6e-21 107.1 66 71.2
Potri.007G019833 Populus trichocarpa HOM05D003405 ORTHO05D003920 2.7e-21 106.3 66 72.7
CiPaw.07G051500 Carya illinoinensis HOM05D003405 ORTHO05D003920 3.5e-21 105.9 66 72.7
FvH4_1g12600 Fragaria vesca HOM05D003405 ORTHO05D003920 3.5e-21 105.9 66 72.7
FAN19G0435 Fragaria x ananassa HOM05D003405 ORTHO05D003920 3.5e-21 105.9 66 72.7
FAN23G2718 Fragaria x ananassa HOM05D003405 ORTHO05D003920 3.5e-21 105.9 66 72.7
QL06p035199 Quercus lobata HOM05D003405 ORTHO05D003920 3.5e-21 105.9 66 71.2
RcHm_v2.0_Chr2g0100561 Rosa chinensis HOM05D003405 ORTHO05D003920 3.5e-21 105.9 66 72.7
Actinidia00757 Actinidia chinensis HOM05D003405 ORTHO05D003920 4.5e-21 105.5 66 72.7
Cfa013259 Carpinus fangiana HOM05D003405 ORTHO05D006100 5.9e-21 105.1 66 69.7
FAN28G1735 Fragaria x ananassa HOM05D003405 ORTHO05D003920 5.9e-21 105.1 66 71.2
Potri.007G019601 Populus trichocarpa HOM05D003405 ORTHO05D003920 5.9e-21 105.1 66 71.2
Prupe.7G160700 Prunus persica HOM05D003405 ORTHO05D003920 7.7e-21 104.8 66 69.7
vmacro02576 Vaccinium macrocarpon HOM05D003405 ORTHO05D003920 7.7e-21 104.8 66 71.2
GSVIVG01018880001 Vitis vinifera HOM05D003405 ORTHO05D003920 7.7e-21 104.8 66 68.2
FAN04G1939 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.0e-20 104.4 66 71.2
FvH4_5g33300 Fragaria vesca HOM05D003405 ORTHO05D003920 1.3e-20 104.0 66 71.2
FAN08G1135 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.3e-20 104.0 66 71.2
FAN18G4171 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.3e-20 104.0 66 71.2
Rhsim13G0025400 Rhododendron simsii HOM05D003405 ORTHO05D003920 1.3e-20 104.0 65 72.3
Sabra07G0016700 Salix brachista HOM05D003405 ORTHO05D003920 1.3e-20 104.0 66 69.7
Atru.chr3.672 Acer truncatum HOM05D003405 ORTHO05D003920 1.7e-20 103.6 66 69.7
Actinidia09137 Actinidia chinensis HOM05D003405 ORTHO05D003920 2.3e-20 103.2 66 74.2
Duzib264G0139 Durio zibethinus HOM05D003405 ORTHO05D003920 2.9e-20 102.8 63 79.4
CANSAT11G1046 Cannabis sativa HOM05D003405 ORTHO05D003920 3.8e-20 102.4 66 71.2
Eucgr.H02854 Eucalyptus grandis HOM05D003405 ORTHO05D003920 5.0e-20 102.1 69 68.1
Manes.12G078200 Manihot esculenta HOM05D003405 ORTHO05D003920 5.0e-20 102.1 66 69.7
Rhsim05G0047900 Rhododendron simsii HOM05D003405 ORTHO05D003920 5.0e-20 102.1 114 48.2
RhsimUnG0142200 Rhododendron simsii HOM05D003405 ORTHO05D003920 5.0e-20 102.1 114 48.2
Manes.01G139900 Manihot esculenta HOM05D003405 ORTHO05D003920 6.6e-20 101.7 66 68.2
SEGI_38491 Sequoiadendron giganteum HOM05D003405 ORTHO05D003920 1.5e-19 100.5 66 68.2
Sc09g0007320 Simmondsia chinensis HOM05D003405 ORTHO05D003920 1.5e-19 100.5 66 65.2
arahy.Tifrunner.gnm1.ann1.1Z7RSE Arachis hypogaea HOM05D003405 ORTHO05D003920 3.3e-19 99.4 95 54.7
Atru.chr1.1031 Acer truncatum HOM05D003405 ORTHO05D003920 7.2e-19 98.2 66 66.7
Ciclev10004806m.g Citrus clementina HOM05D003405 ORTHO05D003920 7.2e-19 98.2 67 68.7
ClCG04G004000 Citrullus lanatus HOM05D003405 ORTHO05D003920 9.5e-19 97.8 66 66.7
Hund18693 Selenicereus undatus HOM05D003405 ORTHO05D003920 9.5e-19 97.8 66 68.2
Sed0024756 Sechium edule HOM05D003405 ORTHO05D003920 1.2e-18 97.4 66 65.2
Hma1.2p1_0083F.1_g042700 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 1.6e-18 97.1 65 64.6
CsaV3_2G007870 Cucumis sativus L. HOM05D003405 ORTHO05D003920 2.1e-18 96.7 66 65.2
SGA_v2.0_scaffold80G25931 Striga asiatica HOM05D003405 ORTHO05D003920 2.1e-18 96.7 68 61.8
ECA240G1009 Erigeron canadensis HOM05D003405 ORTHO05D003920 2.8e-18 96.3 66 65.2
EL10As7g23803 Beta vulgaris HOM05D003405 ORTHO05D003920 3.6e-18 95.9 66 66.7
THA.LOC104821304 Tarenaya hassleriana HOM05D003405 ORTHO05D003920 3.6e-18 95.9 66 63.6
AUR62033117 Chenopodium quinoa HOM05D003405 ORTHO05D003920 4.7e-18 95.5 66 65.2
CDE02G2548 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 6.1e-18 95.1 66 66.7
SalBow6G4756 Salvia bowleyana HOM05D003405 ORTHO05D003920 1.8e-17 93.6 66 62.1
TAR628G0767 Trochodendron aralioides HOM05D003405 ORTHO05D003920 1.8e-17 93.6 69 63.8
AUR62039160 Chenopodium quinoa HOM05D003405 ORTHO05D003920 2.3e-17 93.2 66 62.1
CDE09G0427 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 3.0e-17 92.8 66 63.6
Phvul.008G287000 Phaseolus vulgaris HOM05D003405 ORTHO05D003920 4.0e-17 92.4 66 63.6
CDE09G0650 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 6.8e-17 91.7 66 63.6
Lsat_1_v5_gn_5_59220 Lactuca sativa HOM05D003405 ORTHO05D003920 8.9e-17 91.3 57 71.9
Glyma.02G307200 Glycine max HOM05D003405 ORTHO05D003920 1.5e-16 90.5 84 50.0
Nitab4.5_0001652g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.5e-16 90.5 66 60.6
Nitab4.5_0004347g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.5e-16 90.5 66 60.6
DCAR_023249 Daucus carota HOM05D003405 ORTHO05D003920 2.6e-16 89.7 66 63.6
Migut.H00806 Erythranthe guttata HOM05D003405 ORTHO05D003920 2.6e-16 89.7 66 62.1
Solyc04g005330.3 Solanum lycopersicum HOM05D003405 ORTHO05D003920 2.6e-16 89.7 66 60.6
Sopen04g001310 Solanum pennellii HOM05D003405 ORTHO05D003920 2.6e-16 89.7 66 60.6
PGSC0003DMG400023568 Solanum tuberosum HOM05D003405 ORTHO05D003920 2.6e-16 89.7 66 60.6
Glyma.14G005900 Glycine max HOM05D003405 ORTHO05D003920 3.4e-16 89.4 78 52.6
VMungo0647G2029 Vigna mungo HOM05D003405 ORTHO05D003920 4.4e-16 89.0 67 62.7
Nitab4.5_0000401g0230 Nicotiana tabacum HOM05D003405 ORTHO05D003920 5.7e-16 88.6 66 57.6
Cc04_g14810 Coffea canephora HOM05D003405 ORTHO05D003920 7.5e-16 88.2 66 59.1
Ah.05g167170 Amaranthus hybridus HOM05D003405 ORTHO05D003920 1.3e-15 87.4 66 59.1
HanXRQChr13g0411651 Helianthus annuus HOM05D003405 ORTHO05D003920 2.2e-15 86.7 63 63.5
LjContig00081g0028006 Lotus japonicus HOM05D003405 ORTHO05D003920 2.2e-15 86.7 69 58.0
Hma1.2p1_0822F.1_g224510 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 2.8e-15 86.3 65 58.5
BcaC09g51456 Brassica carinata HOM05D003405 ORTHO05D003920 6.3e-15 85.1 68 58.8
BcaNung04868 Brassica carinata HOM05D003405 ORTHO05D003920 6.3e-15 85.1 68 57.4
C01p12940 Brassica napus HOM05D003405 ORTHO05D003920 6.3e-15 85.1 68 58.8
BolC1t01269H Brassica oleracea HOM05D003405 ORTHO05D003920 6.3e-15 85.1 68 58.8
unitig_52.g17243 Utricularia gibba HOM05D003405 ORTHO05D003920 8.3e-15 84.7 120 39.2
Carub.0007s2229 Capsella rubella HOM05D003405 ORTHO05D003920 1.1e-14 84.3 68 58.8
Thhalv10024971m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 1.1e-14 84.3 68 58.8
Pp3c4_20160 Physcomitrium patens HOM05D003405 ORTHO05D003920 1.1e-14 84.3 82 52.4
arahy.Tifrunner.gnm1.ann1.015YF3 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.4e-14 84.0 66 56.1
Sp7g17610 Schrenkiella parvula HOM05D003405 ORTHO05D003920 1.4e-14 84.0 68 57.4
A01p10930 Brassica napus HOM05D003405 ORTHO05D003920 1.8e-14 83.6 68 57.4
BraA01t01039Z Brassica rapa HOM05D003405 ORTHO05D003920 1.8e-14 83.6 68 57.4
Peaxi162Scf00047g00219 Petunia axillaris HOM05D003405 ORTHO05D003920 1.8e-14 83.6 66 54.5
AL7G35270 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 2.4e-14 83.2 68 57.4
PSO832G1536 Papaver somniferum HOM05D003405 ORTHO05D003920 2.4e-14 83.2 73 54.8
BcaC01g00579 Brassica carinata HOM05D003405 ORTHO05D003920 3.1e-14 82.8 68 57.4
CARHR225780 Cardamine hirsuta HOM05D003405 ORTHO05D003920 4.1e-14 82.4 68 57.4
BcaB04g18506 Brassica carinata HOM05D003405 ORTHO05D003920 5.4e-14 82.0 92 46.7
C03p81570 Brassica napus HOM05D003405 ORTHO05D003920 5.4e-14 82.0 68 57.4
BolC3t20427H Brassica oleracea HOM05D003405 ORTHO05D003920 5.4e-14 82.0 68 57.4
BcaB04g18507 Brassica carinata HOM05D003405 ORTHO05D003920 7.0e-14 81.6 68 55.9
Atru.chr3.717 Acer truncatum HOM05D003405 ORTHO05D003920 9.2e-14 81.3 72 51.4
AT4G18900 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 9.2e-14 81.3 66 57.6
arahy.Tifrunner.gnm1.ann1.6C167N Arachis hypogaea HOM05D003405 ORTHO05D003920 9.2e-14 81.3 66 54.5
arahy.Tifrunner.gnm1.ann1.ZY1N1V Arachis hypogaea HOM05D003405 ORTHO05D003920 9.2e-14 81.3 66 54.5
AT4G18905 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 2.7e-13 79.7 68 54.4
arahy.Tifrunner.gnm1.ann1.A1R0CF Arachis hypogaea HOM05D003405 ORTHO05D003920 2.7e-13 79.7 65 53.8
arahy.Tifrunner.gnm1.ann1.LTR966 Arachis hypogaea HOM05D003405 ORTHO05D003920 3.5e-13 79.3 66 53.0
BraA08t33397Z Brassica rapa HOM05D003405 ORTHO05D003920 4.5e-13 79.0 77 50.6
MBI16_g36844_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 5.9e-13 78.6 66 57.6
arahy.Tifrunner.gnm1.ann1.Q3GRJ7 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.3e-12 77.4 66 51.5
PGSC0003DMG402005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 1.3e-12 77.4 70 51.4
Zm00001eb142980 Zea mays HOM05D003405 ORTHO05D003920 1.7e-12 77.0 66 54.5
Aa31LG6G1580 Aethionema arabicum HOM05D003405 ORTHO05D003920 2.3e-12 76.6 67 56.7
MBI02_g23715_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 2.9e-12 76.3 66 56.1
Os01g0924300 Oryza sativa ssp. japonica HOM05D003405 ORTHO05D003920 2.9e-12 76.3 66 51.5
C03p81560 Brassica napus HOM05D003405 ORTHO05D003920 6.6e-12 75.1 77 49.4
BolC3t20426H Brassica oleracea HOM05D003405 ORTHO05D003920 6.6e-12 75.1 77 49.4
Nitab4.5_0003101g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.9e-11 73.6 65 49.2
BcaC01g00577 Brassica carinata HOM05D003405 ORTHO05D003920 3.3e-11 72.8 77 48.1
Mapoly0004s0245 Marchantia polymorpha HOM05D003405 ORTHO05D003920 3.3e-11 72.8 70 50.0
arahy.Tifrunner.gnm1.ann1.LKD0H4 Arachis hypogaea HOM05D003405 ORTHO05D003920 5.6e-11 72.0 65 50.8
Aqoxy2G03536 Aquilegia oxysepala HOM05D003405 ORTHO05D003920 7.3e-11 71.6 66 51.5
Lj9A413G54 Lonicera japonica HOM05D003405 ORTHO05D003920 9.5e-11 71.2 66 54.5
Ca_20890_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 1.2e-10 70.9 64 50.0
arahy.Tifrunner.gnm1.ann1.AGQ12H Arachis hypogaea HOM05D003405 ORTHO05D003920 1.6e-10 70.5 58 55.2
MELO3C004100.2 Cucumis melo HOM05D003405 ORTHO05D003920 1.6e-10 70.5 66 50.0
TPR.G15067 Trifolium pratense HOM05D003405 ORTHO05D003920 6.1e-10 68.6 51 62.7
Ca_06470_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 8.0e-10 68.2 53 58.5
AagrBONN_evm.TU.Sc2ySwM_228.2786 Anthoceros agrestis HOM05D003405 ORTHO05D003920 1.4e-09 67.4 64 50.0
arahy.Tifrunner.gnm1.ann1.LK2XUL Arachis hypogaea HOM05D003405 ORTHO05D003920 1.8e-09 67.0 68 48.5
CBR_g8571 Chara braunii HOM05D003405 ORTHO05D003920 1.8e-09 67.0 74 44.6
Medtr5g097870 Medicago truncatula HOM05D003405 ORTHO05D003920 2.3e-09 66.6 51 60.8
Psat2g004040 Pisum sativum HOM05D003405 ORTHO05D003920 4.0e-09 65.9 51 58.8
Carub.0007s2230 Capsella rubella HOM05D003405 ORTHO05D003920 5.2e-09 65.5 65 47.7
PSO761G0245 Papaver somniferum HOM05D003405 ORTHO05D003920 6.8e-09 65.1 42 69.0
ClCG06G014970 Citrullus lanatus HOM05D003405 ORTHO05D003920 8.9e-09 64.7 121 37.2
Oeu047246.2 Olea europaea HOM05D003405 ORTHO05D003920 1.5e-08 63.9 66 48.5
SMO361G0182 Selaginella moellendorffii HOM05D003405 ORTHO05D003920 1.5e-08 63.9 67 47.8
ATR0693G254 Amborella trichopoda HOM05D003405 ORTHO05D003920 2.0e-08 63.5 49 57.1
HanXRQChr03g0083001 Helianthus annuus HOM05D003405 ORTHO05D003920 5.8e-08 62.0 57 52.6
Ca_21295_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 7.5e-08 61.6 68 47.1
SGA_v2.0_scaffold81G26011 Striga asiatica HOM05D003405 ORTHO05D003920 1.7e-07 60.5 111 35.1
Oeu028071.1 Olea europaea HOM05D003405 ORTHO05D003920 2.2e-07 60.1 49 53.1
AL7G15790 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 4.9e-07 58.9 59 49.2
SMO361G0432 Selaginella moellendorffii HOM05D003405 ORTHO05D003920 2.4e-06 56.6 39 61.5


User provided reference genes

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