Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G076100 Theobroma cacao HOM05D000003 ORTHO05D000004 1.3e-168 596.3 287 100.0
COL.COLO4_35424 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.8e-21 107.5 212 28.3
Thecc.04G261100 Theobroma cacao HOM05D000003 ORTHO05D000004 8.9e-21 105.1 177 30.5
Atru.chr11.133 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-19 101.3 210 30.5
COL.COLO4_11923 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.2e-19 100.5 175 32.6
Atru.chr4.2177 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-19 99.4 253 26.9
Atru.chr9.316 Acer truncatum HOM05D000003 ORTHO05D002259 6.3e-19 99.0 229 30.6
Atru.chr6.413 Acer truncatum HOM05D000003 ORTHO05D002259 1.8e-18 97.4 210 27.1
Atru.chr1.2408 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-18 97.1 206 27.7
Thecc.04G086900 Theobroma cacao HOM05D000508 ORTHO05D000371 4.1e-18 96.3 107 39.3
Atru.chr2.2547 Acer truncatum HOM05D000003 ORTHO05D000004 5.4e-18 95.9 205 27.8
Atru.chr3.3329 Acer truncatum HOM05D000003 ORTHO05D002259 7.0e-18 95.5 203 30.5
Atru.chr10.984 Acer truncatum HOM05D000502 ORTHO05D002259 2.0e-17 94.0 209 27.8
Atru.chr2.915 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-17 93.6 228 26.3
Atru.chr6.307 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-17 93.6 197 27.4
Atru.chr10.61 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-17 93.2 175 30.9
Atru.chr2.1999 Acer truncatum HOM05D000003 ORTHO05D002259 3.5e-17 93.2 208 27.9
Thecc.09G223500 Theobroma cacao HOM05D009258 ORTHO05D000006 5.9e-17 92.4 137 36.5
Atru.chr11.2510 Acer truncatum HOM05D000003 ORTHO05D000004 7.8e-17 92.0 207 29.5
Atru.chr4.3084 Acer truncatum HOM05D000003 ORTHO05D000004 7.8e-17 92.0 219 26.5
Atru.chr2.1089 Acer truncatum HOM05D000003 ORTHO05D002259 1.3e-16 91.3 175 30.3
Atru.chr9.631 Acer truncatum HOM05D000003 ORTHO05D002259 1.3e-16 91.3 105 40.0
Atru.chr6.295 Acer truncatum HOM05D000003 ORTHO05D002259 2.3e-16 90.5 181 29.8
arahy.Tifrunner.gnm1.ann1.8AAX84 Arachis hypogaea HOM05D000003 ORTHO05D000004 5.0e-16 89.4 209 25.8
Lj6g0025281 Lotus japonicus HOM05D000003 ORTHO05D000004 5.0e-16 89.4 176 30.1
Hma1.2p1_3154F.1_g333360 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 8.6e-16 88.6 95 38.9
Atru.chr8.2073 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-15 88.2 219 26.9
Thecc.09G211800 Theobroma cacao HOM05D009258 ORTHO05D009583 1.1e-15 88.2 76 48.7
Atru.chr4.1942 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-15 87.8 201 27.9
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-15 87.4 233 21.9
Thecc.02G094300 Theobroma cacao HOM05D000003 ORTHO05D002259 1.9e-15 87.4 101 40.6
Atru.chr10.836 Acer truncatum HOM05D000003 ORTHO05D002259 3.3e-15 86.7 106 37.7
Atru.chr1.3974 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-15 86.3 199 26.6
Atru.chr5.2215 Acer truncatum HOM05D000003 ORTHO05D002259 5.6e-15 85.9 189 29.6
Atru.chr10.1636 Acer truncatum HOM05D000003 ORTHO05D002259 1.2e-14 84.7 167 32.3
Atru.chr4.2622 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-14 83.6 217 27.2
Atru.chr6.184 Acer truncatum HOM05D000003 ORTHO05D002259 2.8e-14 83.6 214 26.2
Thecc.08G169100 Theobroma cacao HOM05D000003 ORTHO05D023207 3.6e-14 83.2 112 34.8
Atru.chr11.1073 Acer truncatum HOM05D000003 ORTHO05D002259 4.7e-14 82.8 183 28.4
Hma1.2p1_0055F.1_g031300 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 4.7e-14 82.8 115 33.9
Atru.chr2.2024 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-13 81.3 105 33.3
Thecc.09G171600 Theobroma cacao HOM05D000003 ORTHO05D000004 1.4e-13 81.3 94 37.2
Thecc.05G228200 Theobroma cacao HOM05D000003 ORTHO05D000004 3.1e-13 80.1 84 40.5
Atru.chr4.2640 Acer truncatum HOM05D000003 ORTHO05D002259 4.0e-13 79.7 104 34.6
Atru.chr6.511 Acer truncatum HOM05D000003 ORTHO05D002259 5.2e-13 79.3 110 33.6
Thecc.09G250800 Theobroma cacao HOM05D000003 ORTHO05D002259 5.2e-13 79.3 106 35.8
Atru.chr12.2307 Acer truncatum HOM05D000003 ORTHO05D002259 6.8e-13 79.0 202 25.7
Atru.chr2.1221 Acer truncatum HOM05D000003 ORTHO05D000004 8.9e-13 78.6 116 31.0
Atru.chr11.503 Acer truncatum HOM05D000003 ORTHO05D002259 1.2e-12 78.2 181 26.0
Atru.chr5.2369 Acer truncatum HOM05D000003 ORTHO05D002259 1.2e-12 78.2 177 29.9
Cpa.g.sc23.130 Carica papaya HOM05D000003 ORTHO05D000004 1.2e-12 78.2 102 39.2
Atru.chr6.102 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-12 77.8 196 25.0
COL.COLO4_20219 Corchorus olitorius HOM05D000003 ORTHO05D023207 2.0e-12 77.4 155 30.3
Atru.chr1.3579 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-12 77.0 175 30.9
Cpa.g.sc140.5 Carica papaya HOM05D000003 ORTHO05D000004 2.6e-12 77.0 176 28.4
Atru.chr2.2564 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-12 76.6 109 35.8
Atru.chr6.573 Acer truncatum HOM05D000003 ORTHO05D000004 5.8e-12 75.9 179 26.8
Atru.chr8.612 Acer truncatum HOM05D000003 ORTHO05D000004 5.8e-12 75.9 133 32.3
Atru.chr3.2341 Acer truncatum HOM05D000003 ORTHO05D002259 9.8e-12 75.1 124 30.6
MBI14_g15700_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 9.8e-12 75.1 179 27.4
Atru.chr2.3564 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-11 74.3 205 23.4
MBI19_g24051_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 2.9e-11 73.6 178 29.2
Atru.chr13.1556 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-11 72.8 137 26.3
Atru.chr3.2346 Acer truncatum HOM05D000003 ORTHO05D002259 4.9e-11 72.8 123 30.1
Atru.chr6.1192 Acer truncatum HOM05D000003 ORTHO05D002259 6.4e-11 72.4 102 30.4
LjContig00081g0021034 Lotus japonicus HOM05D002545 ORTHO05D002335 6.4e-11 72.4 116 32.8
MBI14_g43802_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 6.4e-11 72.4 164 26.8
TWI39G0070 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 8.3e-11 72.0 237 24.5
Actinidia03486 Actinidia chinensis HOM05D000028 ORTHO05D000296 1.4e-10 71.2 143 31.5
Cpa.g.sc82.67 Carica papaya HOM05D000003 ORTHO05D000004 2.4e-10 70.5 110 31.8
MBI04_g06213_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 2.4e-10 70.5 103 35.0
MBI05_g07846_MAGBIO Magnolia biondii HOM05D003982 ORTHO05D004831 2.4e-10 70.5 106 32.1
Oeu045954.1 Olea europaea HOM05D000003 ORTHO05D000004 2.4e-10 70.5 177 29.4
Hund02492 Selenicereus undatus HOM05D000003 ORTHO05D000004 2.4e-10 70.5 105 29.5
TPR.G25618 Trifolium pratense HOM05D000003 ORTHO05D000004 2.4e-10 70.5 198 27.8
CSS0001040 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.2e-10 70.1 182 27.5
TWI36G1756 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.2e-10 70.1 104 32.7
CSS0031349 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.4e-10 69.3 118 28.8
Cpa.g.sc83.78 Carica papaya HOM05D000003 ORTHO05D000004 5.4e-10 69.3 118 29.7
Atru.chr4.1365 Acer truncatum HOM05D000003 ORTHO05D023207 7.0e-10 68.9 67 44.8
Hund09829 Selenicereus undatus HOM05D000003 ORTHO05D000004 7.0e-10 68.9 105 29.5
HanXRQChr01g0027891 Helianthus annuus HOM05D000003 ORTHO05D000004 1.6e-09 67.8 177 31.6
MBI05_g04110_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 1.6e-09 67.8 192 27.6
Hund02994 Selenicereus undatus HOM05D000003 ORTHO05D000004 1.6e-09 67.8 105 29.5
Hund12935 Selenicereus undatus HOM05D008000 ORTHO05D010275 2.0e-09 67.4 101 29.7
Hund22312 Selenicereus undatus HOM05D000003 ORTHO05D000004 2.0e-09 67.4 105 29.5
CSS0019468 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.7e-09 67.0 125 28.0
COL.COLO4_36939 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.7e-09 67.0 102 28.4
Atru.chr6.158 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-09 66.6 132 28.8
Cpa.g.sc202.9 Carica papaya HOM05D000003 ORTHO05D000004 3.5e-09 66.6 109 31.2
Hund00002 Selenicereus undatus HOM05D005986 ORTHO05D007467 3.5e-09 66.6 105 31.4
MBI16_g27832_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 4.6e-09 66.2 204 25.0
Hund25051 Selenicereus undatus HOM05D000003 ORTHO05D000004 6.0e-09 65.9 105 31.4
CSS0014107 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.8e-09 65.5 107 29.0
MBI01_g26131_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 7.8e-09 65.5 222 28.4
Atru.chr2.1988 Acer truncatum HOM05D000003 ORTHO05D002259 1.0e-08 65.1 104 32.7
Cpa.g.sc1998.1 Carica papaya HOM05D000003 ORTHO05D000004 1.0e-08 65.1 114 29.8
MBI04_g19005_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 1.0e-08 65.1 149 30.2
Hund12693 Selenicereus undatus HOM05D001165 ORTHO05D000004 1.0e-08 65.1 115 33.9
Atru.chr10.949 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-08 64.7 118 28.8
Thecc.09G263100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.3e-08 64.7 64 46.9
TPR.G37514 Trifolium pratense HOM05D002545 ORTHO05D002335 1.3e-08 64.7 188 27.7
Atru.chr4.2769 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-08 64.3 67 41.8
CSS0007419 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.7e-08 64.3 183 26.8
Cpa.g.sc35.64 Carica papaya HOM05D000003 ORTHO05D000004 1.7e-08 64.3 114 32.5
Aqoxy1G00096 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.0e-08 63.5 105 34.3
Aqoxy5G00983 Aquilegia oxysepala HOM05D000003 ORTHO05D008335 3.0e-08 63.5 200 28.5
QL07p014239 Quercus lobata HOM05D003429 ORTHO05D003873 3.0e-08 63.5 189 26.5
Rhsim11G0018500 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.0e-08 63.5 164 27.4
Aqoxy1G02708 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 5.0e-08 62.8 200 27.0
MBI06_g35598_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 5.0e-08 62.8 175 26.3
PSO210G2794 Papaver somniferum HOM05D000003 ORTHO05D000004 5.0e-08 62.8 181 24.3
Cpa.g.sc195.3 Carica papaya HOM05D000003 ORTHO05D000004 6.6e-08 62.4 161 25.5
HanXRQChr08g0227851 Helianthus annuus HOM05D000003 ORTHO05D000004 6.6e-08 62.4 196 28.1
MBI07_g21394_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 6.6e-08 62.4 104 30.8
QL02p081065 Quercus lobata HOM05D000003 ORTHO05D000004 6.6e-08 62.4 173 27.7
Atru.chr1.565 Acer truncatum HOM05D000003 ORTHO05D002259 8.6e-08 62.0 98 28.6
Atru.chr3.3474 Acer truncatum HOM05D000003 ORTHO05D002259 8.6e-08 62.0 138 23.9
CSS0029089 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 8.6e-08 62.0 171 26.9
Hund22310 Selenicereus undatus HOM05D000003 ORTHO05D000004 8.6e-08 62.0 105 29.5
Cpa.g.sc352.1 Carica papaya HOM05D000003 ORTHO05D000004 1.9e-07 60.8 119 31.9
Cpa.g.sc363.2 Carica papaya HOM05D000003 ORTHO05D000004 1.9e-07 60.8 113 27.4
MBI05_g11580_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 1.9e-07 60.8 180 25.0
MBI11_g01322_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 1.9e-07 60.8 103 31.1
TWI81G1062 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.9e-07 60.8 142 26.8
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 2.5e-07 60.5 173 28.3
Cpa.g.sc2.342 Carica papaya HOM05D000003 ORTHO05D000004 2.5e-07 60.5 95 34.7
HanXRQChr07g0206811 Helianthus annuus HOM05D000003 ORTHO05D000004 2.5e-07 60.5 201 28.9
PSO724G0020 Papaver somniferum HOM05D000003 ORTHO05D000004 2.5e-07 60.5 182 24.2
Hund14265 Selenicereus undatus HOM05D003118 ORTHO05D003618 2.5e-07 60.5 105 26.7
Atru.chr4.1522 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-07 60.1 117 30.8
Aqoxy7G02192 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.3e-07 60.1 178 27.5
arahy.Tifrunner.gnm1.ann1.TTJ1ZL Arachis hypogaea HOM05D000003 ORTHO05D000004 3.3e-07 60.1 107 29.0
Thecc.05G083000 Theobroma cacao HOM05D000003 ORTHO05D002259 3.3e-07 60.1 174 25.9
Aqoxy2G02832 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.3e-07 59.7 102 30.4
MBI16_g31133_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 4.3e-07 59.7 122 26.2
QL10p042354 Quercus lobata HOM05D002009 ORTHO05D005728 4.3e-07 59.7 173 28.9
MBI05_g25766_MAGBIO Magnolia biondii HOM05D000742 ORTHO05D000924 5.6e-07 59.3 180 25.6
QL08p008133 Quercus lobata HOM05D000003 ORTHO05D000004 5.6e-07 59.3 123 28.5
QL11p024822 Quercus lobata HOM05D000003 ORTHO05D000004 5.6e-07 59.3 189 28.0
MBI07_g02009_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 7.3e-07 58.9 117 25.6
QL01p048042 Quercus lobata HOM05D001672 ORTHO05D000004 7.3e-07 58.9 111 27.9
Atru.chr2.1449 Acer truncatum HOM05D000003 ORTHO05D002259 9.5e-07 58.5 70 37.1
QL06p005440 Quercus lobata HOM05D000003 ORTHO05D000004 9.5e-07 58.5 220 25.0
Atru.chr8.226 Acer truncatum HOM05D000003 ORTHO05D002259 1.2e-06 58.2 111 27.0
Cpa.g.sc109.46 Carica papaya HOM05D000003 ORTHO05D000004 1.2e-06 58.2 109 28.4
Cpa.g.sc104.66 Carica papaya HOM05D000003 ORTHO05D000004 1.6e-06 57.8 102 31.4
ECA232G4038 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.6e-06 57.8 107 27.1
Gohir.A05G284475 Gossypium hirsutum HOM05D000003 ORTHO05D000004 1.6e-06 57.8 113 26.5
HanXRQChr04g0127051 Helianthus annuus HOM05D000003 ORTHO05D000004 1.6e-06 57.8 195 25.6
QL10p005473 Quercus lobata HOM05D000230 ORTHO05D000176 1.6e-06 57.8 122 29.5
Atru.chr8.1451 Acer truncatum HOM05D000003 ORTHO05D002259 2.1e-06 57.4 70 32.9
CSS0044712 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.1e-06 57.4 128 31.2
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 2.1e-06 57.4 105 29.5
QL02p012254 Quercus lobata HOM05D003211 ORTHO05D003621 2.1e-06 57.4 102 32.4
Hund00011 Selenicereus undatus HOM05D000003 ORTHO05D000004 2.1e-06 57.4 115 30.4
Cpa.g.sc44.94 Carica papaya HOM05D000003 ORTHO05D000004 2.8e-06 57.0 100 31.0
MBI18_g29371_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 2.8e-06 57.0 194 26.8
Cpa.g.sc2.86 Carica papaya HOM05D000003 ORTHO05D000004 3.6e-06 56.6 102 30.4
Cpa.g.sc60.64 Carica papaya HOM05D000003 ORTHO05D000004 3.6e-06 56.6 117 35.0
MBI14_g10150_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 3.6e-06 56.6 176 25.6
QL07p023909 Quercus lobata HOM05D000003 ORTHO05D000004 3.6e-06 56.6 143 28.0
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 3.6e-06 56.6 104 29.8
Atru.chr4.2573 Acer truncatum HOM05D000104 ORTHO05D002259 4.7e-06 56.2 78 35.9
Atru.chr7.700 Acer truncatum HOM05D000003 ORTHO05D000004 4.7e-06 56.2 65 36.9
Aqoxy3G02781 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.7e-06 56.2 101 28.7
Aqoxy4G00307 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.7e-06 56.2 180 23.9
COL.COLO4_05373 Corchorus olitorius HOM05D008263 ORTHO05D000004 4.7e-06 56.2 77 29.9
MBI06_g15030_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 4.7e-06 56.2 111 27.9
MBI07_g42066_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 4.7e-06 56.2 104 28.8
Phvul.005G130200 Phaseolus vulgaris HOM05D002545 ORTHO05D002335 4.7e-06 56.2 89 29.2
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 4.7e-06 56.2 188 27.7
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 4.7e-06 56.2 106 30.2
QL93p0118_0006 Quercus lobata HOM05D000003 ORTHO05D000004 4.7e-06 56.2 143 28.0
Cpa.g.sc126.48 Carica papaya HOM05D000003 ORTHO05D000004 6.2e-06 55.8 113 28.3
Atru.chr8.876 Acer truncatum HOM05D000003 ORTHO05D000004 8.0e-06 55.5 82 30.5
MBI01_g01229_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D000004 8.0e-06 55.5 181 27.1
MBI02_g21867_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 8.0e-06 55.5 83 37.3
MBI09_g18615_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 8.0e-06 55.5 178 24.7
PSO210G3134 Papaver somniferum HOM05D000003 ORTHO05D000004 8.0e-06 55.5 118 27.1
PSO832G3948 Papaver somniferum HOM05D000003 ORTHO05D000004 8.0e-06 55.5 181 26.5


User provided reference genes

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