Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 3.5e-49 198.0 101 100.0
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 4.5e-36 154.5 102 75.5
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 1.0e-35 153.3 101 77.2
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 1.3e-35 152.9 104 78.8
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 2.2e-35 152.1 102 75.5
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 3.8e-35 151.4 102 74.5
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 8.7e-32 140.2 106 70.8
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 7.7e-28 127.1 104 65.4
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 2.9e-27 125.2 101 65.3
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 1.6e-25 119.4 101 63.4
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 1.6e-25 119.4 102 61.8
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 3.6e-25 118.2 103 66.0
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 1.0e-24 116.7 101 61.4
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 2.3e-24 115.5 101 63.4
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 3.0e-24 115.2 101 58.4
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 3.9e-24 114.8 101 61.4
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 3.9e-24 114.8 101 65.3
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 5.1e-24 114.4 101 59.4
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 5.1e-24 114.4 101 62.4
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 8.8e-24 113.6 101 67.3
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 3.3e-23 111.7 106 62.3
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 3.3e-23 111.7 101 61.4
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 8.2e-22 107.1 101 56.4
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.4e-21 106.3 99 58.6
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.8e-21 105.9 99 58.6
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 1.8e-21 105.9 101 58.4
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 5.3e-21 104.4 101 52.5
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 6.9e-21 104.0 99 58.6
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 9.1e-21 103.6 99 58.6
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 2.6e-20 102.1 87 63.2
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 3.4e-20 101.7 101 51.5
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 4.5e-20 101.3 100 56.0
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 4.5e-20 101.3 101 56.4
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.0e-19 100.1 106 50.9
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.0e-19 100.1 106 50.9
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.3e-19 99.8 107 50.5
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 1.7e-19 99.4 99 56.6
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 2.2e-19 99.0 106 51.9
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 2.9e-19 98.6 95 61.1
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 5.0e-19 97.8 102 55.9
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 8.5e-19 97.1 107 49.5
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 8.5e-19 97.1 107 49.5
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 1.1e-18 96.7 105 54.3
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 1.1e-18 96.7 105 52.4
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 1.4e-18 96.3 103 55.3
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 4.2e-18 94.7 107 52.3
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 5.5e-18 94.4 103 53.4
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 5.5e-18 94.4 101 51.5
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 5.5e-18 94.4 72 66.7
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 5.5e-18 94.4 98 54.1
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 7.2e-18 94.0 66 68.2
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 7.2e-18 94.0 107 53.3
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 9.4e-18 93.6 104 52.9
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 1.6e-17 92.8 101 51.5
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 1.6e-17 92.8 85 58.8
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 1.6e-17 92.8 105 50.5
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 1.0e-16 90.1 82 57.3
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 1.0e-16 90.1 104 51.9
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 1.4e-16 89.7 59 72.9
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 1.1e-15 86.7 111 49.5
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 1.5e-15 86.3 106 49.1
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 2.6e-15 85.5 109 46.8
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 2.6e-15 85.5 109 46.8
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 5.7e-15 84.3 63 66.7
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 7.4e-15 84.0 169 37.9
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 1.3e-14 83.2 55 65.5
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 1.3e-14 83.2 72 58.3
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 1.3e-14 83.2 101 48.5
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 1.3e-14 83.2 71 57.7
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 2.8e-14 82.0 112 46.4
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 6.3e-14 80.9 69 53.6
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 8.2e-14 80.5 60 65.0
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 8.2e-14 80.5 104 45.2
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 1.1e-13 80.1 111 44.1
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 1.8e-13 79.3 101 46.5
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 1.8e-13 79.3 60 63.3
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 1.8e-13 79.3 101 44.6
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 1.8e-13 79.3 60 63.3
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 1.8e-13 79.3 63 61.9
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 1.8e-13 79.3 55 65.5
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 1.8e-13 79.3 55 65.5
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 1.8e-13 79.3 55 65.5
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 2.4e-13 79.0 53 66.0
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.1e-13 78.2 107 45.8
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 7.0e-13 77.4 97 48.5
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 9.1e-13 77.0 97 43.3
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 9.1e-13 77.0 97 43.3
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 1.2e-12 76.6 48 70.8
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 1.6e-12 76.3 52 67.3
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 1.6e-12 76.3 57 61.4
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 7.7e-12 73.9 48 70.8
Gohir.D13G071750 Gossypium hirsutum HOM05D061539 ORTHO05D009484 1.0e-11 73.6 100 45.0
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 2.5e-10 68.9 46 65.2
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 2.5e-10 68.9 42 71.4
Gorai.013G082200 Gossypium raimondii HOM05D061539 ORTHO05D009484 2.1e-09 65.9 95 43.2


User provided reference genes

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