Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1526.1 747 100.0
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1424.8 747 93.0
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1411.7 747 92.5
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1410.2 752 91.5
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1388.6 747 90.4
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1388.2 747 90.5
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1360.5 746 89.7
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1349.3 747 88.0
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1344.7 748 88.8
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1341.3 747 87.7
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1337.8 745 87.0
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1306.6 746 86.7
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1266.1 752 83.0
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1261.1 747 83.7
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1252.7 749 82.5
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1243.0 752 81.4
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 0.0e+00 1241.1 746 83.0
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1239.2 748 80.5
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1236.5 748 80.6
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1231.1 753 81.0
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1226.1 751 80.8
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1226.1 753 80.5
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1225.7 752 79.9
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1220.7 763 79.6
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1196.0 777 76.1
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1186.4 777 75.8
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 0.0e+00 1172.1 748 76.2
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1171.8 775 74.5
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1168.3 751 78.3
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1166.4 786 74.4
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1139.4 776 73.2
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 0.0e+00 1129.4 778 72.4
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1128.2 770 73.4
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1125.5 756 74.2
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1122.1 756 73.5
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1120.5 755 73.9
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1120.1 757 74.1
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 0.0e+00 1118.2 757 74.0
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1115.1 771 72.1
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1113.6 756 74.1
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1113.6 768 72.4
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1111.3 776 72.3
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1110.9 721 77.9
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1110.9 768 72.3
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 0.0e+00 1110.5 762 73.1
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1109.7 757 73.3
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1109.4 757 73.1
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1109.0 776 72.2
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1100.9 775 70.8
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1099.3 798 69.8
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 0.0e+00 1098.2 759 72.7
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1095.5 769 70.2
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 0.0e+00 1095.1 751 72.6
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 0.0e+00 1089.7 748 70.9
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1088.9 784 70.3
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 0.0e+00 1087.0 749 70.9
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1085.9 770 69.9
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 0.0e+00 1084.7 749 70.8
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1084.7 774 70.5
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1084.3 773 70.2
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 0.0e+00 1084.3 748 70.7
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 0.0e+00 1082.8 752 71.9
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 0.0e+00 1082.0 749 70.9
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1081.2 774 69.5
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1079.7 771 69.9
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1079.3 757 72.4
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 0.0e+00 1078.2 749 70.5
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1078.2 772 70.2
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1076.2 772 69.9
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1075.8 773 70.2
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1075.1 771 70.3
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 1.0e-310 1069.7 753 69.7
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 1.7e-310 1068.9 774 69.0
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 2.5e-309 1065.1 766 69.1
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 5.6e-309 1063.9 770 69.6
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 1.2e-308 1062.8 779 68.7
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 2.8e-308 1061.6 755 69.0
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 1.1e-307 1059.7 754 69.1
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.1e-307 1058.1 775 68.3
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 4.0e-307 1057.7 775 68.1
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 1.5e-306 1055.8 775 68.4
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.5e-306 1055.8 775 68.4
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 2.0e-306 1055.4 775 67.9
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 1.3e-305 1052.7 757 69.1
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 6.4e-305 1050.4 775 67.7
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 3.0e-302 1041.6 865 64.7
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 2.5e-301 1038.5 777 68.0
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 5.6e-301 1037.3 772 67.5
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 1.2e-300 1036.2 772 68.3
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 2.4e-299 1031.9 766 66.4
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 8.4e-297 1023.5 775 66.3
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 2.4e-296 1021.9 766 69.7
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 2.1e-295 1018.8 775 65.9
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 3.5e-295 1018.1 716 70.8
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 1.3e-294 1016.1 776 65.2
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 1.7e-294 1015.8 770 66.5
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 8.1e-292 1006.9 774 65.0
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 8.1e-292 1006.9 777 64.7
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 9.9e-290 1000.0 765 68.0
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.7e-289 999.2 772 64.9
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 9.3e-288 993.4 805 65.2
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.2e-287 993.0 803 63.1
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 4.6e-287 991.1 783 63.7
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 7.8e-287 990.3 764 64.8
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 6.6e-286 987.3 756 66.7
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.9e-285 985.7 770 65.2
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 3.3e-285 984.9 806 62.7
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.3e-284 983.0 779 63.5
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 2.1e-284 982.2 772 63.2
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 6.2e-284 980.7 776 63.1
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 8.1e-284 980.3 774 63.8
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.4e-283 979.5 772 63.9
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 1.7e-281 972.6 775 64.4
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 4.9e-281 971.1 775 63.1
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.1e-280 969.9 768 65.5
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.4e-280 969.5 776 62.9
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 7.1e-280 967.2 776 62.8
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 1.6e-279 966.1 774 63.3
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 4.6e-279 964.5 777 63.3
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.8e-275 952.6 777 62.9
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 2.4e-275 952.2 767 62.5
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 2.4e-272 942.2 754 64.6
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 6.0e-271 937.6 758 64.8
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.3e-269 931.4 764 60.1
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 8.2e-268 927.2 682 70.7
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 1.8e-267 926.0 766 61.1
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 1.0e-265 920.2 770 61.7
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 2.2e-265 919.1 705 66.7
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 2.9e-265 918.7 749 62.8
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 6.5e-265 917.5 782 61.4
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 1.4e-254 883.2 769 59.8
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 3.0e-254 882.1 720 65.6
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.7e-252 876.3 665 67.8
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 2.8e-252 875.5 767 59.5
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 9.1e-251 870.5 756 59.8
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 2.2e-249 865.9 772 58.2
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 5.5e-248 861.3 764 58.9
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 2.9e-217 759.2 739 54.9
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 1.8e-190 670.2 419 79.7
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 2.0e-189 666.8 735 48.3
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 5.8e-189 665.2 746 50.0
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 3.5e-186 656.0 763 47.2
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 3.3e-184 649.4 422 75.1
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.4e-182 644.0 768 46.9
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 4.4e-181 639.0 770 45.3
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 3.5e-178 629.4 781 45.7
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 1.5e-160 570.9 739 42.2
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 1.4e-150 537.7 387 67.7
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 1.4e-150 537.7 387 67.7
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 1.4e-147 527.7 392 65.6
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 3.2e-147 526.6 279 90.3
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 3.2e-139 500.0 565 47.1
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 5.5e-131 472.6 474 55.9
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 4.8e-119 433.0 252 79.8
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 7.0e-118 429.1 456 48.9
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 1.2e-101 375.2 751 34.4
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.8e-81 308.1 277 56.3
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 6.2e-66 256.5 755 27.4
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 4.0e-57 227.3 289 46.0
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 5.3e-57 226.9 191 57.6
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 8.4e-55 219.5 142 75.4
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.3e-43 181.0 150 65.3
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.5e-40 170.6 82 85.4
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 7.6e-32 143.3 65 90.8
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.0e-23 116.3 165 39.4
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.5e-22 111.7 135 40.7
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 1.8e-12 79.0 103 41.7
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 1.5e-11 75.9 108 42.6
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.5e-11 75.9 66 59.1
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 1.3e-10 72.8 73 49.3
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 8.2e-10 70.1 101 40.6


User provided reference genes

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