Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 2.0e-211 738.8 355 100.0
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 4.4e-179 631.3 355 84.8
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.4e-164 583.2 361 78.7
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 1.4e-164 583.2 361 78.9
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 8.9e-164 580.5 361 78.7
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 7.3e-158 560.8 329 82.4
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 2.6e-155 552.4 319 82.8
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 2.3e-151 539.3 328 78.7
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.2e-149 533.5 329 78.1
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.0e-143 513.8 316 77.8
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 9.3e-121 437.6 353 65.2
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 8.7e-119 431.0 312 68.6
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 4.3e-118 428.7 353 63.7
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 4.8e-117 425.2 276 73.6
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 9.0e-116 421.0 354 61.0
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 1.5e-115 420.2 360 61.1
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 1.5e-115 420.2 364 60.4
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 2.9e-114 416.0 285 70.2
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 4.2e-113 412.1 360 61.1
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 4.6e-112 408.7 310 66.1
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 6.7e-111 404.8 350 59.1
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 4.3e-110 402.1 248 75.4
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 5.7e-110 401.7 278 68.3
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 7.4e-110 401.4 367 60.2
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 7.4e-110 401.4 362 57.7
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 1.6e-109 400.2 226 80.1
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 6.3e-109 398.3 324 63.6
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 1.4e-108 397.1 275 70.5
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 4.1e-108 395.6 282 68.1
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 5.3e-108 395.2 360 59.2
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 5.3e-108 395.2 258 72.9
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 5.3e-108 395.2 356 58.1
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 1.5e-107 393.7 261 71.6
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 4.5e-107 392.1 316 63.6
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 4.5e-107 392.1 327 61.5
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 1.3e-106 390.6 364 58.5
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 1.3e-106 390.6 353 59.8
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 1.3e-106 390.6 353 59.8
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 1.3e-106 390.6 261 72.0
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 1.7e-106 390.2 261 71.6
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 2.2e-106 389.8 227 79.7
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 5.0e-106 388.7 354 57.6
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 8.5e-106 387.9 221 79.2
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 8.5e-106 387.9 262 71.8
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 8.5e-106 387.9 307 63.2
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 3.2e-105 386.0 354 58.5
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 3.2e-105 386.0 298 64.8
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 9.4e-105 384.4 368 57.1
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 1.2e-104 384.0 298 64.1
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 1.2e-104 384.0 298 64.1
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 1.2e-104 384.0 256 72.7
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 6.1e-104 381.7 260 70.0
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 1.8e-103 380.2 275 69.1
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 1.8e-103 380.2 367 56.7
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 2.3e-103 379.8 216 82.4
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 3.0e-103 379.4 317 61.5
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 5.1e-103 378.6 304 63.2
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 6.7e-103 378.3 304 63.2
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 8.8e-103 377.9 368 56.2
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 1.1e-102 377.5 287 65.2
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 2.0e-102 376.7 304 63.8
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 2.0e-102 376.7 275 67.6
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 2.5e-102 376.3 260 69.2
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 2.5e-102 376.3 286 65.7
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 3.3e-102 375.9 205 82.4
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.3e-102 375.9 205 82.4
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 3.3e-102 375.9 205 82.4
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 3.3e-102 375.9 216 81.0
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 4.3e-102 375.6 305 61.6
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 5.7e-102 375.2 205 82.4
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 1.7e-101 373.6 367 56.7
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 1.7e-101 373.6 216 81.0
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 1.7e-101 373.6 272 66.9
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 2.2e-101 373.2 258 67.8
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 2.8e-101 372.9 261 69.0
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 6.3e-101 371.7 216 80.6
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 6.3e-101 371.7 214 80.8
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 8.2e-101 371.3 275 66.5
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 8.2e-101 371.3 311 61.7
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.1e-100 370.9 322 59.0
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 1.8e-100 370.2 236 72.9
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 2.4e-100 369.8 260 68.1
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 3.1e-100 369.4 275 65.5
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 4.1e-100 369.0 212 79.2
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 4.1e-100 369.0 205 81.0
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 9.1e-100 367.9 274 66.8
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 9.1e-100 367.9 306 60.5
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 2.0e-99 366.7 215 79.1
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 2.0e-99 366.7 293 62.8
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 2.0e-99 366.7 216 77.8
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 2.6e-99 366.3 222 73.9
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 2.6e-99 366.3 283 66.1
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 3.4e-99 365.9 313 59.1
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 5.9e-99 365.2 220 76.4
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 5.9e-99 365.2 253 70.0
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 7.7e-99 364.8 312 57.7
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 1.7e-98 363.6 255 69.0
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 1.7e-98 363.6 368 53.0
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 3.8e-98 362.5 306 59.5
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 4.2e-97 359.0 233 72.1
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 5.5e-97 358.6 292 62.0
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 9.4e-97 357.8 271 65.7
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 1.0e-95 354.4 216 75.9
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 5.1e-95 352.1 256 62.1
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 8.8e-95 351.3 194 81.4
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 1.5e-94 350.5 301 56.8
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 4.4e-94 349.0 219 74.0
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.2e-91 340.9 274 61.3
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 2.0e-91 340.1 314 56.4
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 2.0e-91 340.1 286 59.4
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 4.5e-91 339.0 208 74.5
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 3.2e-89 332.8 264 62.1
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.2e-88 330.9 222 67.1
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.6e-88 330.5 214 68.7
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 2.1e-88 330.1 247 62.8
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 3.6e-88 329.3 209 72.2
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 2.2e-85 320.1 211 67.3
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 3.0e-79 299.7 162 81.5
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 3.0e-79 299.7 218 61.0
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 1.2e-75 287.7 193 72.5
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 3.8e-74 282.7 224 58.5
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 4.2e-73 279.3 162 75.9
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 1.2e-72 277.7 221 58.4
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 2.1e-72 276.9 160 78.1
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 2.0e-70 270.4 187 71.1
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 3.7e-69 266.2 142 87.3
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 8.3e-69 265.0 228 58.3
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 4.1e-68 262.7 154 74.0
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 1.6e-64 250.8 144 78.5
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 4.1e-60 236.1 198 56.1
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 2.0e-54 217.2 122 74.6
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 1.4e-52 211.1 155 65.2
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 1.6e-48 197.6 160 60.0
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 1.3e-45 188.0 174 49.4
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 9.9e-30 135.2 113 53.1
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 8.1e-24 115.5 83 59.0
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 5.3e-23 112.8 123 52.0
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 1.0e-18 98.6 131 47.3
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 5.6e-17 92.8 95 55.8
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 1.3e-16 91.7 87 57.5
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 3.6e-16 90.1 155 39.4
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 2.4e-15 87.4 68 66.2
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 4.0e-15 86.7 59 72.9
EL10Ac8g18949 Beta vulgaris HOM05D005195 ORTHO05D006088 1.3e-10 71.6 92 42.4
Zm00001eb382840 Zea mays HOM05D003596 ORTHO05D004256 1.0e-05 55.5 43 58.1


User provided reference genes

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