Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G067300 Theobroma cacao HOM05D006517 ORTHO05D007886 1.9e-156 555.8 289 100.0
Duzib150G1397 Durio zibethinus HOM05D006517 ORTHO05D007886 5.4e-135 484.6 287 84.3
COL.COLO4_21178 Corchorus olitorius HOM05D006517 ORTHO05D007886 3.5e-134 481.9 288 83.0
Duzib168G1027 Durio zibethinus HOM05D006517 ORTHO05D007886 2.5e-132 475.7 287 82.2
Gohir.D08G268100 Gossypium hirsutum HOM05D006517 ORTHO05D007886 3.1e-130 468.8 289 80.3
Gorai.004G285800 Gossypium raimondii HOM05D006517 ORTHO05D007886 3.1e-130 468.8 289 80.3
Gohir.A08G246900 Gossypium hirsutum HOM05D006517 ORTHO05D007886 9.9e-129 463.8 289 79.2
Duzib187G0844 Durio zibethinus HOM05D006517 ORTHO05D007886 8.7e-117 424.1 287 76.7
Atru.chr7.1806 Acer truncatum HOM05D006517 ORTHO05D007886 6.9e-114 414.5 287 71.1
CiPaw.03G198900 Carya illinoinensis HOM05D006517 ORTHO05D007886 2.9e-112 409.1 286 72.4
QL11p003516 Quercus lobata HOM05D006517 ORTHO05D007886 3.8e-112 408.7 286 72.4
Cfa010680 Carpinus fangiana HOM05D006517 ORTHO05D007886 3.5e-110 402.1 284 70.8
GSVIVG01000273001 Vitis vinifera HOM05D006517 ORTHO05D007886 5.1e-109 398.3 288 69.1
Potri.018G047000 Populus trichocarpa HOM05D006517 ORTHO05D007886 3.3e-108 395.6 287 69.3
Manes.03G055100 Manihot esculenta HOM05D006517 ORTHO05D007886 4.3e-108 395.2 287 70.7
Prupe.7G189300 Prunus persica HOM05D006517 ORTHO05D007886 3.7e-107 392.1 287 69.3
TAR383G1010 Trochodendron aralioides HOM05D006517 ORTHO05D007886 3.4e-105 385.6 288 67.4
CSS0016512 Camellia sinensis var. sinensis HOM05D006517 ORTHO05D007886 1.1e-103 380.6 286 67.5
Glyma.13G116000 Glycine max HOM05D006517 ORTHO05D007886 2.1e-102 376.3 280 68.2
Ca_21351_v3 Cicer arietinum L. HOM05D006517 ORTHO05D007886 3.5e-102 375.6 282 67.0
Medtr4g124370 Medicago truncatula HOM05D006517 ORTHO05D007886 6.0e-102 374.8 281 66.5
Glyma.17G043800 Glycine max HOM05D006517 ORTHO05D007886 1.1e-100 370.5 280 67.1
Eucgr.C00754 Eucalyptus grandis HOM05D006517 ORTHO05D007886 1.5e-100 370.2 282 66.3
Potri.006G217100 Populus trichocarpa HOM05D006517 ORTHO05D007886 4.3e-100 368.6 282 70.9
Dinv42443 Davidia involucrata HOM05D006517 ORTHO05D007886 7.4e-100 367.9 284 67.3
RcHm_v2.0_Chr2g0096541 Rosa chinensis HOM05D006517 ORTHO05D007886 7.4e-100 367.9 287 65.5
Lj4g0027818 Lotus japonicus HOM05D006517 ORTHO05D007886 9.6e-100 367.5 284 65.5
TPR.G12541 Trifolium pratense HOM05D006517 ORTHO05D007886 1.8e-98 363.2 281 66.5
Lalb_Chr13g0299091 Lupinus albus HOM05D006517 ORTHO05D007886 5.3e-98 361.7 283 65.7
THA.LOC104804445 Tarenaya hassleriana HOM05D006517 ORTHO05D007886 1.5e-97 360.1 284 64.1
MD15G1225700 Malus domestica HOM05D006517 ORTHO05D007886 1.1e-95 354.0 285 67.0
Phvul.003G125800 Phaseolus vulgaris HOM05D006517 ORTHO05D007886 4.2e-95 352.1 282 65.6
PGR124G0001 Punica granatum HOM05D006517 ORTHO05D007886 5.5e-95 351.7 281 64.1
PGR142G0057 Punica granatum HOM05D006517 ORTHO05D007886 5.5e-95 351.7 281 64.1
Ciclev10009053m.g Citrus clementina HOM05D006517 ORTHO05D007886 9.3e-95 350.9 288 64.2
Migut.J00866 Erythranthe guttata HOM05D006517 ORTHO05D007886 2.7e-94 349.4 289 61.2
ClCG03G014700 Citrullus lanatus HOM05D006517 ORTHO05D007886 4.6e-94 348.6 282 63.5
CANSAT56G3804 Cannabis sativa HOM05D006517 ORTHO05D007886 1.0e-93 347.4 286 68.2
CsaV3_1G041470 Cucumis sativus L. HOM05D006517 ORTHO05D007886 1.0e-93 347.4 285 62.8
Oeu000272.2 Olea europaea HOM05D006517 ORTHO05D007886 3.9e-93 345.5 286 61.9
CANSAT56G0784 Cannabis sativa HOM05D006517 ORTHO05D007886 1.1e-92 344.0 286 67.5
Sed0014627 Sechium edule HOM05D006517 ORTHO05D007886 3.1e-90 335.9 284 60.9
Lsat_1_v5_gn_8_118080 Lactuca sativa HOM05D006517 ORTHO05D007886 6.5e-88 328.2 288 59.4
Nitab4.5_0000987g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 6.5e-88 328.2 287 58.5
FAN23G1398 Fragaria x ananassa HOM05D006517 ORTHO05D007886 7.2e-87 324.7 284 59.2
MD02G1105800 Malus domestica HOM05D006517 ORTHO05D007886 2.1e-86 323.2 287 63.1
MELO3C015558.2 Cucumis melo HOM05D006517 ORTHO05D007886 2.7e-86 322.8 285 59.3
Sabra06G0167400 Salix brachista HOM05D006517 ORTHO05D007886 2.3e-85 319.7 310 57.4
EL10Ac8g18944 Beta vulgaris HOM05D006517 ORTHO05D007886 1.5e-84 317.0 282 57.1
HanXRQChr09g0258421 Helianthus annuus HOM05D006517 ORTHO05D007886 5.7e-84 315.1 288 57.3
AUR62025324 Chenopodium quinoa HOM05D006517 ORTHO05D007886 2.4e-82 309.7 283 55.1
MBI13_g05966_MAGBIO Magnolia biondii HOM05D006517 ORTHO05D007886 2.4e-82 309.7 298 54.0
Sc18g0002960 Simmondsia chinensis HOM05D006517 ORTHO05D007886 4.1e-82 308.9 281 57.7
arahy.Tifrunner.gnm1.ann1.2S6U7G Arachis hypogaea HOM05D006517 ORTHO05D007886 5.3e-82 308.5 262 62.6
FvH4_1g09680 Fragaria vesca HOM05D006517 ORTHO05D007886 9.1e-82 307.8 297 55.9
FAN26G1998 Fragaria x ananassa HOM05D006517 ORTHO05D007886 9.1e-82 307.8 297 55.9
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 2.6e-81 306.2 254 63.8
ATR0006G021 Amborella trichopoda HOM05D006517 ORTHO05D007886 2.2e-80 303.1 288 55.2
CAN.G55.2 Capsicum annuum HOM05D006517 ORTHO05D007886 2.2e-80 303.1 290 55.5
unitig_26.g9120 Utricularia gibba HOM05D006517 ORTHO05D007886 4.2e-79 298.9 287 56.1
Psat4g020160 Pisum sativum HOM05D006517 ORTHO05D007886 7.2e-79 298.1 239 64.0
VMungo1215G1783 Vigna mungo HOM05D006517 ORTHO05D007886 1.2e-78 297.4 282 63.1
PSO675G5415 Papaver somniferum HOM05D006517 ORTHO05D007886 1.6e-78 297.0 284 54.2
PSO541G2149 Papaver somniferum HOM05D006517 ORTHO05D007886 3.6e-78 295.8 284 54.6
CDE05G1274 Ceratophyllum demersum HOM05D006517 ORTHO05D007886 6.1e-78 295.0 292 53.4
Aqoxy7G00916 Aquilegia oxysepala HOM05D006517 ORTHO05D007886 3.0e-77 292.7 287 53.7
Nitab4.5_0005239g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 3.9e-77 292.4 287 55.4
SGA_v2.0_scaffold318G48507 Striga asiatica HOM05D006517 ORTHO05D007886 5.1e-77 292.0 297 52.9
Hund08920 Selenicereus undatus HOM05D006517 ORTHO05D007886 1.1e-76 290.8 282 55.0
ECA232G0292 Erigeron canadensis HOM05D001622 ORTHO05D002989 9.7e-76 287.7 269 58.7
Zm00001eb327610 Zea mays HOM05D006517 ORTHO05D007886 2.9e-72 276.2 280 50.7
Oeu000950.1 Olea europaea HOM05D006517 ORTHO05D007886 8.5e-72 274.6 249 59.0
Actinidia39601 Actinidia chinensis HOM05D006517 ORTHO05D007886 2.5e-71 273.1 236 60.6
Actinidia39602 Actinidia chinensis HOM05D006517 ORTHO05D007886 3.2e-71 272.7 240 60.4
arahy.Tifrunner.gnm1.ann1.0410DC Arachis hypogaea HOM05D006517 ORTHO05D007886 1.6e-70 270.4 261 58.2
FAN26G3113 Fragaria x ananassa HOM05D006517 ORTHO05D007886 3.6e-70 269.2 297 51.5
AUR62028338 Chenopodium quinoa HOM05D000417 ORTHO05D007886 1.3e-67 260.8 276 50.4
Os07g0618600 Oryza sativa ssp. japonica HOM05D006517 ORTHO05D007886 4.1e-66 255.8 286 53.5
FAN28G2617 Fragaria x ananassa HOM05D006517 ORTHO05D007886 2.6e-65 253.1 284 51.1
SalBow6G1494 Salvia bowleyana HOM05D006517 ORTHO05D007886 1.9e-63 246.9 259 54.1
Nn8g38504 Nelumbo nucifera HOM05D006517 ORTHO05D007886 7.2e-63 245.0 284 49.6
SGA_v2.0_scaffold31G12706 Striga asiatica HOM05D006517 ORTHO05D007886 2.6e-60 236.5 242 51.7
Mapoly0086s0040 Marchantia polymorpha HOM05D006517 ORTHO05D007886 5.7e-60 235.3 287 45.6
FAN23G2301 Fragaria x ananassa HOM05D006517 ORTHO05D007886 7.5e-60 235.0 284 48.6
SMO117G0175 Selaginella moellendorffii HOM05D006517 ORTHO05D007886 7.5e-60 235.0 304 44.1
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 4.8e-51 205.7 244 48.8
DCAR_010521 Daucus carota HOM05D006517 ORTHO05D007886 7.0e-50 201.8 297 44.4
Rhsim05G0081000 Rhododendron simsii HOM05D006517 ORTHO05D007886 5.9e-49 198.7 268 45.9
AL4G18760 Arabidopsis lyrata HOM05D006517 ORTHO05D007886 1.0e-48 198.0 204 53.9
Aa31LG5G9580 Aethionema arabicum HOM05D006517 ORTHO05D007886 3.8e-48 196.1 212 52.8
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 3.8e-48 196.1 208 49.0
Carub.0004s0605 Capsella rubella HOM05D006517 ORTHO05D007886 3.8e-48 196.1 205 54.1
CARHR115040 Cardamine hirsuta HOM05D006517 ORTHO05D007886 3.3e-47 193.0 210 53.8
AT2G26210 Arabidopsis thaliana HOM05D006517 ORTHO05D007886 4.2e-47 192.6 205 52.7
Sp4g06310 Schrenkiella parvula HOM05D006517 ORTHO05D007886 5.5e-47 192.2 220 51.8
HPP92_002241 Vanilla planifolia HOM05D000872 ORTHO05D000777 8.9e-45 184.9 244 49.2
Cpa.g.sc82.30 Carica papaya HOM05D006517 ORTHO05D007886 4.4e-44 182.6 113 80.5
C04p55990 Brassica napus HOM05D006517 ORTHO05D007886 3.7e-43 179.5 170 57.6
BolC4t27132H Brassica oleracea HOM05D006517 ORTHO05D007886 3.7e-43 179.5 170 57.6
Pp3c18_11010 Physcomitrium patens HOM05D006517 ORTHO05D007886 6.3e-43 178.7 286 38.1
A04p20280 Brassica napus HOM05D006517 ORTHO05D007886 1.1e-42 177.9 194 51.0
BraA04t17607Z Brassica rapa HOM05D006517 ORTHO05D007886 3.2e-42 176.4 194 51.0
CBR_g36802 Chara braunii HOM05D006517 ORTHO05D007886 7.0e-42 175.3 285 35.1
Solyc06g031680.2 Solanum lycopersicum HOM05D006517 ORTHO05D007886 7.0e-42 175.3 149 57.7
AagrBONN_evm.TU.Sc2ySwM_362.2898 Anthoceros agrestis HOM05D006517 ORTHO05D007886 2.7e-41 173.3 223 43.5
Cc09_g04390 Coffea canephora HOM05D006517 ORTHO05D007886 8.6e-40 168.3 141 58.2
Sopen06g010170 Solanum pennellii HOM05D006517 ORTHO05D007886 2.5e-39 166.8 135 60.7
Cc09_g04380 Coffea canephora HOM05D006517 ORTHO05D007886 3.6e-38 162.9 121 66.1
BcaNung07167 Brassica carinata HOM05D006517 ORTHO05D007886 4.7e-38 162.5 170 61.2
Solyc06g031690.4 Solanum lycopersicum HOM05D006517 ORTHO05D007886 1.6e-33 147.5 95 75.8
SEGI_24061 Sequoiadendron giganteum HOM05D006517 ORTHO05D007886 1.3e-32 144.4 144 47.9
FAN19G3155 Fragaria x ananassa HOM05D006517 ORTHO05D007886 3.0e-32 143.3 230 42.2
Cpa.g.sc82.25 Carica papaya HOM05D006517 ORTHO05D007886 5.0e-32 142.5 70 90.0
Thhalv10002200m.g Eutrema salsugineum HOM05D006517 ORTHO05D007886 3.3e-31 139.8 216 45.4
vmacro13145 Vaccinium macrocarpon HOM05D006517 ORTHO05D007886 9.2e-26 121.7 217 39.6
Peaxi162Scf00658g00031 Petunia axillaris HOM05D000115 ORTHO05D000464 4.1e-18 96.3 136 41.9
Medtr5g081760 Medicago truncatula HOM05D006517 ORTHO05D007886 6.0e-17 92.4 81 58.0
Lsat_1_v5_gn_5_30201 Lactuca sativa HOM05D006517 ORTHO05D007886 3.9e-16 89.7 93 51.6
Medtr4g036440 Medicago truncatula HOM05D006517 ORTHO05D007886 4.7e-14 82.8 75 57.3
Medtr8g098885 Medicago truncatula HOM05D006517 ORTHO05D007886 4.0e-13 79.7 49 73.5
Cpa.g.sc82.29 Carica papaya HOM05D006517 ORTHO05D007886 6.8e-13 79.0 65 55.4
TWI73G0176 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 1.5e-07 61.2 86 37.2
TWI09G1601 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 2.1e-06 57.4 100 35.0
A01p39440 Brassica napus HOM05D000903 ORTHO05D000731 6.2e-06 55.8 113 30.1
BraA01t03984Z Brassica rapa HOM05D000903 ORTHO05D000731 6.2e-06 55.8 113 30.1
Thecc.06G161000 Theobroma cacao HOM05D000088 ORTHO05D003056 6.2e-06 55.8 73 35.6


User provided reference genes

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