Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 0.0e+00 1383.6 999 100.0
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 0.0e+00 1170.2 1006 88.5
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 0.0e+00 1166.0 1013 86.4
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 0.0e+00 1136.3 1014 85.6
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 0.0e+00 1126.7 1010 85.3
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 0.0e+00 1118.6 1007 85.7
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 0.0e+00 1084.7 1011 77.7
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.5e-272 943.3 955 77.3
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 2.2e-268 929.5 1025 68.8
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 3.1e-254 882.5 1043 69.7
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 2.2e-252 876.3 1037 73.0
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 4.9e-252 875.2 1040 69.7
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 6.0e-250 868.2 1021 68.5
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 8.7e-249 864.4 1051 69.4
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 8.7e-249 864.4 1041 66.0
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 1.4e-246 857.1 1048 69.8
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 6.9e-246 854.7 1026 69.4
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 4.5e-245 852.0 1022 64.5
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 2.9e-244 849.4 1047 67.1
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 3.2e-243 845.9 892 69.6
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.3e-241 840.5 1021 69.4
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 2.3e-241 839.7 1021 69.3
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 6.7e-241 838.2 1023 65.3
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 5.3e-238 828.6 1030 59.9
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 5.8e-237 825.1 1017 70.0
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.2e-236 823.2 1026 66.9
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 4.3e-232 808.9 1117 62.0
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 5.7e-232 808.5 1021 67.9
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 4.8e-231 805.4 1044 70.2
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.6e-226 788.9 895 73.2
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 3.9e-225 785.8 946 66.0
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.3e-224 782.7 892 67.2
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.3e-223 780.8 1030 62.7
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 1.2e-221 774.2 913 69.4
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 8.8e-217 758.1 1031 66.4
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 1.1e-216 757.7 912 73.4
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.0e-216 756.9 1032 66.0
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 5.7e-216 755.4 929 72.0
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 1.7e-215 753.8 942 68.3
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 1.4e-214 750.7 884 73.3
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 2.4e-214 750.0 1021 65.1
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.5e-213 747.3 1007 62.6
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 7.7e-213 745.0 1012 66.9
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 1.0e-212 744.6 895 73.6
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 1.9e-211 740.3 1044 64.8
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 5.5e-211 738.8 895 72.6
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.6e-210 737.3 1034 66.7
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 2.1e-210 736.9 1019 65.6
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.0e-209 734.6 906 71.5
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 1.1e-208 731.1 915 71.5
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 3.7e-207 726.1 916 69.9
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 6.3e-207 725.3 892 72.3
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.4e-206 724.2 843 75.7
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.4e-206 724.2 892 72.2
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 1.8e-206 723.8 916 70.5
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 1.2e-205 721.1 909 69.6
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 1.5e-205 720.7 937 69.5
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 7.7e-205 718.4 904 68.6
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 3.8e-204 716.1 1012 64.2
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 8.5e-204 714.9 912 70.1
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 1.1e-203 714.5 909 69.9
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 1.5e-203 714.1 865 73.1
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 7.2e-203 711.8 1017 65.2
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 9.4e-203 711.4 900 73.1
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 1.6e-202 710.7 894 62.6
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 3.6e-202 709.5 908 70.7
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 6.1e-202 708.8 1006 62.6
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.0e-201 708.0 826 74.1
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 2.3e-201 706.8 1021 62.1
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 3.0e-201 706.4 1022 61.8
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 1.1e-200 704.5 885 71.3
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 4.4e-200 702.6 851 73.6
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 4.4e-200 702.6 1005 62.2
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 4.8e-199 699.1 870 69.8
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 4.8e-199 699.1 1014 65.1
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 6.3e-199 698.7 1018 65.0
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.1e-198 698.0 1016 64.3
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 1.4e-198 697.6 1022 63.8
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 1.8e-198 697.2 895 64.0
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 7.0e-198 695.3 860 72.8
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 9.1e-198 694.9 1005 61.2
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 1.2e-197 694.5 1014 61.0
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 4.5e-197 692.6 1010 65.0
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 1.0e-196 691.4 1002 61.8
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 8.5e-196 688.3 893 68.1
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 2.5e-195 686.8 875 69.9
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 2.5e-195 686.8 1011 63.6
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 4.2e-195 686.0 907 68.0
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 7.2e-195 685.3 816 71.3
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 9.4e-195 684.9 902 70.6
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 1.2e-194 684.5 903 70.5
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 3.6e-194 682.9 1014 64.3
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 2.3e-193 680.2 916 69.5
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 4.0e-193 679.5 877 68.5
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 8.8e-193 678.3 1033 60.6
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 2.6e-192 676.8 903 70.0
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 5.7e-192 675.6 882 66.2
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 7.5e-192 675.2 1013 62.0
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 6.3e-191 672.2 915 69.1
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 1.1e-190 671.4 1023 63.1
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 1.1e-190 671.4 882 69.7
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 5.4e-190 669.1 893 69.0
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 9.1e-190 668.3 922 64.8
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 4.5e-189 666.0 888 70.2
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 8.5e-188 661.8 855 68.1
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.1e-187 661.4 839 68.5
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.4e-185 654.4 904 61.1
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 5.2e-185 652.5 885 67.6
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.7e-183 647.5 883 68.7
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.0e-180 638.3 906 67.1
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.8e-180 636.3 689 78.2
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 3.8e-180 636.3 933 61.7
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 3.3e-179 633.3 817 71.4
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 9.5e-179 631.7 1009 51.6
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 1.1e-174 618.2 999 55.9
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 5.9e-173 612.5 892 66.6
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 5.0e-172 609.4 838 68.4
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 6.6e-172 609.0 906 64.0
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 5.6e-171 605.9 857 66.7
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 1.6e-170 604.4 838 70.4
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 4.0e-169 599.7 820 68.8
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 3.0e-164 583.6 689 81.0
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 5.0e-164 582.8 874 59.4
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 5.0e-164 582.8 874 59.4
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 2.5e-163 580.5 874 59.2
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 2.8e-162 577.0 882 59.4
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 8.1e-162 575.5 971 54.5
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 1.4e-161 574.7 791 66.1
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.8e-161 574.3 874 59.0
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 3.2e-158 563.5 909 60.8
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 3.2e-158 563.5 815 65.2
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 6.0e-157 559.3 905 57.6
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 8.6e-156 555.4 902 63.7
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.5e-155 554.7 1005 51.2
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 1.9e-155 554.3 905 57.7
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 2.5e-155 553.9 908 57.2
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.8e-153 547.7 879 62.0
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 6.4e-151 539.3 908 57.0
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.4e-150 537.3 820 63.9
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 6.0e-149 532.7 741 62.9
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 1.1e-145 521.9 874 57.4
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 3.9e-132 476.9 910 53.1
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 2.6e-128 464.2 795 48.3
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 4.6e-125 453.4 762 60.0
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 7.4e-123 446.0 926 50.0
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 2.1e-122 444.5 801 54.2
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.4e-120 437.2 921 46.3
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.2e-117 428.7 896 55.4
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 7.9e-117 426.0 652 71.0
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 7.2e-110 402.9 711 56.0
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.6e-104 384.4 1006 43.8
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 5.5e-102 376.7 899 35.4
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.7e-98 365.2 645 71.6
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 6.5e-95 353.2 932 48.2
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 2.7e-93 347.8 488 64.8
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.3e-92 344.7 267 67.8
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 7.0e-89 333.2 509 47.0
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 4.5e-88 330.5 433 56.8
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-87 328.6 1310 31.2
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 3.8e-87 327.4 617 62.4
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 6.5e-87 326.6 746 50.1
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 6.8e-76 290.0 621 57.8
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 4.1e-73 280.8 446 46.2
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 2.5e-70 271.6 272 66.5
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 1.1e-54 219.5 144 79.2
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 1.9e-54 218.8 311 74.0
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 3.1e-52 211.5 230 52.2
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.6e-45 189.1 334 39.8
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 8.1e-37 160.2 118 67.8
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 1.4e-25 122.9 79 77.2
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.4e-25 122.9 119 58.0
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 5.4e-25 120.9 88 76.1
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 2.4e-20 105.5 66 84.8
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.3e-13 83.2 62 61.3
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 1.3e-13 83.2 230 74.3
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 1.9e-09 69.3 229 31.9


User provided reference genes

Program Settings