Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G060300 Theobroma cacao HOM05D004557 ORTHO05D005258 6.1e-281 970.3 544 100.0
Thecc.09G060800 Theobroma cacao HOM05D004557 ORTHO05D005258 1.2e-140 504.2 625 54.6
Thecc.05G143900 Theobroma cacao HOM05D004557 ORTHO05D005258 2.3e-126 456.8 442 61.5
Thecc.03G250200 Theobroma cacao HOM05D004557 ORTHO05D005258 1.7e-25 121.7 273 34.8
Migut.B01423 Erythranthe guttata HOM05D004557 ORTHO05D005258 1.1e-24 119.0 266 32.3
Gohir.D08G188200 Gossypium hirsutum HOM05D004557 ORTHO05D005258 9.5e-24 115.9 254 32.7
MD08G1069500 Malus domestica HOM05D004557 ORTHO05D005258 6.2e-23 113.2 256 33.2
CiPaw.09G214400 Carya illinoinensis HOM05D004557 ORTHO05D005258 8.1e-23 112.8 261 31.4
Cpa.g.sc126.43 Carica papaya HOM05D004557 ORTHO05D005258 3.1e-22 110.9 273 31.5
COL.COLO4_37167 Corchorus olitorius HOM05D004557 ORTHO05D005258 8.9e-22 109.4 265 29.1
Sed0027657 Sechium edule HOM05D004557 ORTHO05D005258 8.9e-22 109.4 256 32.4
SGA_v2.0_scaffold98G29377 Striga asiatica HOM05D004557 ORTHO05D005258 1.2e-21 109.0 286 28.7
Gorai.004G198100 Gossypium raimondii HOM05D004557 ORTHO05D005258 2.6e-21 107.8 260 31.2
ClCG08G009910 Citrullus lanatus HOM05D004557 ORTHO05D005258 3.4e-21 107.5 259 29.7
Cfa018005 Carpinus fangiana HOM05D004557 ORTHO05D005258 4.4e-21 107.1 256 32.4
MD15G1052600 Malus domestica HOM05D004557 ORTHO05D005258 4.4e-21 107.1 257 32.3
SalBow5G2684 Salvia bowleyana HOM05D004557 ORTHO05D005258 4.4e-21 107.1 249 30.5
MELO3C011480.2 Cucumis melo HOM05D004557 ORTHO05D005258 5.8e-21 106.7 281 29.2
Lj1g0020695 Lotus japonicus HOM05D004557 ORTHO05D005258 7.5e-21 106.3 247 28.3
CsaV3_6G032010 Cucumis sativus L. HOM05D004557 ORTHO05D005258 1.7e-20 105.1 261 29.9
Prupe.1G406500 Prunus persica HOM05D004557 ORTHO05D005258 3.7e-20 104.0 268 31.7
unitig_26.g8849 Utricularia gibba HOM05D004557 ORTHO05D005258 3.7e-20 104.0 244 31.1
CSS0012791 Camellia sinensis var. sinensis HOM05D004557 ORTHO05D005258 8.3e-20 102.8 252 30.6
Lalb_Chr19g0132651 Lupinus albus HOM05D004557 ORTHO05D005258 1.9e-19 101.7 244 29.9
RcHm_v2.0_Chr7g0228051 Rosa chinensis HOM05D004557 ORTHO05D005258 1.9e-19 101.7 254 28.0
Potri.006G223100 Populus trichocarpa HOM05D004557 ORTHO05D005258 2.4e-19 101.3 255 30.2
COL.COLO4_21118 Corchorus olitorius HOM05D002542 ORTHO05D010145 3.2e-19 100.9 287 28.6
Sabra06G0172400 Salix brachista HOM05D004557 ORTHO05D005258 3.2e-19 100.9 248 30.2
QL02p000341 Quercus lobata HOM05D004557 ORTHO05D005258 4.1e-19 100.5 248 31.0
CiPaw.15G090600 Carya illinoinensis HOM05D004557 ORTHO05D005258 5.4e-19 100.1 256 31.2
CiPaw.15G089600 Carya illinoinensis HOM05D004557 ORTHO05D005258 7.1e-19 99.8 256 31.2
CiPaw.15G089700 Carya illinoinensis HOM05D004557 ORTHO05D005258 7.1e-19 99.8 256 31.2
arahy.Tifrunner.gnm1.ann1.50HX4L Arachis hypogaea HOM05D004557 ORTHO05D005258 1.2e-18 99.0 248 29.0
FvH4_5g32040 Fragaria vesca HOM05D004557 ORTHO05D005258 1.6e-18 98.6 257 28.8
FAN13G2684 Fragaria x ananassa HOM05D004557 ORTHO05D005258 1.6e-18 98.6 257 27.2
FAN18G0835 Fragaria x ananassa HOM05D004557 ORTHO05D005258 1.6e-18 98.6 257 28.8
Nitab4.5_0004953g0040 Nicotiana tabacum HOM05D002542 ORTHO05D010145 1.6e-18 98.6 269 30.9
HanXRQChr09g0248091 Helianthus annuus HOM05D004557 ORTHO05D005258 2.1e-18 98.2 261 29.1
Rhsim01G0109000 Rhododendron simsii HOM05D004557 ORTHO05D005258 2.7e-18 97.8 266 30.1
Solyc08g062200.3 Solanum lycopersicum HOM05D002542 ORTHO05D010145 2.7e-18 97.8 256 30.1
Dinv06254 Davidia involucrata HOM05D004557 ORTHO05D005258 3.5e-18 97.4 275 28.7
Dinv15528 Davidia involucrata HOM05D004557 ORTHO05D005258 3.5e-18 97.4 275 28.7
Sopen08g017790 Solanum pennellii HOM05D004557 ORTHO05D005258 4.6e-18 97.1 254 29.9
Aqoxy7G01097 Aquilegia oxysepala HOM05D004557 ORTHO05D005258 6.0e-18 96.7 252 30.6
CANSAT21G2041 Cannabis sativa HOM05D004557 ORTHO05D005258 1.0e-17 95.9 247 29.6
Dinv29489 Davidia involucrata HOM05D004557 ORTHO05D005258 1.0e-17 95.9 258 30.2
FAN08G0395 Fragaria x ananassa HOM05D004557 ORTHO05D005258 1.0e-17 95.9 257 27.2
arahy.Tifrunner.gnm1.ann1.R4HSFZ Arachis hypogaea HOM05D004557 ORTHO05D005258 1.7e-17 95.1 253 27.7
CiPaw.15G090500 Carya illinoinensis HOM05D004557 ORTHO05D005258 1.7e-17 95.1 249 30.5
FAN04G2671 Fragaria x ananassa HOM05D004557 ORTHO05D005258 2.3e-17 94.7 257 27.2
Psat5g030600 Pisum sativum HOM05D004557 ORTHO05D005258 3.9e-17 94.0 250 27.6
SGA_v2.0_scaffold20G09180 Striga asiatica HOM05D004557 ORTHO05D005258 3.9e-17 94.0 259 29.0
THA.LOC104827156 Tarenaya hassleriana HOM05D004557 ORTHO05D005258 5.1e-17 93.6 254 29.9
FAN06G3367 Fragaria x ananassa HOM05D004557 ORTHO05D005258 8.6e-17 92.8 247 28.3
Hma1.2p1_0231F.1_g097480 Hydrangea macrophylla HOM05D004557 ORTHO05D005258 1.1e-16 92.4 285 27.7
DCAR_000813 Daucus carota HOM05D004557 ORTHO05D005258 3.3e-16 90.9 239 29.3
BcaNung02221 Brassica carinata HOM05D004557 ORTHO05D005258 4.3e-16 90.5 257 26.5
C09p60890 Brassica napus HOM05D004557 ORTHO05D005258 4.3e-16 90.5 247 27.1
BolC9t58932H Brassica oleracea HOM05D004557 ORTHO05D005258 4.3e-16 90.5 247 27.1
Nn5g28590 Nelumbo nucifera HOM05D004557 ORTHO05D005258 5.6e-16 90.1 257 30.4
Cc08_g01350 Coffea canephora HOM05D004557 ORTHO05D005258 7.3e-16 89.7 246 28.9
A10p22940 Brassica napus HOM05D004557 ORTHO05D005258 1.2e-15 89.0 246 27.2
BraA10t44362Z Brassica rapa HOM05D004557 ORTHO05D005258 1.2e-15 89.0 246 27.2
Lalb_Chr08g0244871 Lupinus albus HOM05D004557 ORTHO05D005258 2.8e-15 87.8 247 28.7
Peaxi162Scf00809g00213 Petunia axillaris HOM05D002542 ORTHO05D010145 2.8e-15 87.8 284 27.1
Medtr3g104830 Medicago truncatula HOM05D004557 ORTHO05D005258 3.6e-15 87.4 247 30.0
PSO388G0001 Papaver somniferum HOM05D004557 ORTHO05D005258 8.1e-15 86.3 250 26.0
A02p03380 Brassica napus HOM05D004557 ORTHO05D005258 1.1e-14 85.9 257 28.4
Gohir.D08G268633 Gossypium hirsutum HOM05D004557 ORTHO05D005258 1.4e-14 85.5 117 41.9
Thhalv10013525m.g Eutrema salsugineum HOM05D004557 ORTHO05D005258 1.8e-14 85.1 245 26.5
vmacro20759 Vaccinium macrocarpon HOM05D004557 ORTHO05D005258 1.8e-14 85.1 227 27.8
BraA02t05309Z Brassica rapa HOM05D004557 ORTHO05D005258 3.1e-14 84.3 257 28.0
Psat7g051600 Pisum sativum HOM05D004557 ORTHO05D005258 3.1e-14 84.3 250 27.6
ClCG05G018170 Citrullus lanatus HOM05D004557 ORTHO05D005258 4.0e-14 84.0 274 26.6
TPR.G3531 Trifolium pratense HOM05D004557 ORTHO05D005258 4.0e-14 84.0 267 27.0
CAN.G1245.2 Capsicum annuum HOM05D004557 ORTHO05D005258 8.9e-14 82.8 249 28.5
Lsat_1_v5_gn_7_60080 Lactuca sativa HOM05D004557 ORTHO05D005258 8.9e-14 82.8 216 28.2
PGSC0003DMG400021751 Solanum tuberosum HOM05D004557 ORTHO05D005258 1.2e-13 82.4 234 27.8
Glyma.06G198300 Glycine max HOM05D004557 ORTHO05D005258 2.0e-13 81.6 249 26.9
Glyma.20G016400 Glycine max HOM05D004557 ORTHO05D005258 3.4e-13 80.9 251 26.7
Zm00001eb133740 Zea mays HOM05D004557 ORTHO05D005258 3.4e-13 80.9 260 28.5
BcaC03g18467 Brassica carinata HOM05D004557 ORTHO05D005258 4.4e-13 80.5 257 28.0
C02p08140 Brassica napus HOM05D004557 ORTHO05D005258 4.4e-13 80.5 257 28.0
Actinidia25701 Actinidia chinensis HOM05D004557 ORTHO05D005258 9.9e-13 79.3 189 31.7
VMungo1309G1176 Vigna mungo HOM05D004557 ORTHO05D005258 1.3e-12 79.0 269 25.3
ECA240G2282 Erigeron canadensis HOM05D004557 ORTHO05D005258 1.7e-12 78.6 266 25.9
Haze_18125 Corylus avellana HOM05D004557 ORTHO05D005258 2.9e-12 77.8 216 31.9
Lj7A235T21 Lonicera japonica HOM05D004557 ORTHO05D005258 2.9e-12 77.8 251 27.9
HPP92_024782 Vanilla planifolia HOM05D004557 ORTHO05D005258 2.9e-12 77.8 241 29.9
BolC2t06737H Brassica oleracea HOM05D004557 ORTHO05D005258 4.9e-12 77.0 245 27.8
PSO210G7071 Papaver somniferum HOM05D004557 ORTHO05D005258 6.4e-12 76.6 251 24.7
Nitab4.5_0007748g0010 Nicotiana tabacum HOM05D002542 ORTHO05D010145 1.1e-11 75.9 234 28.2
Sed0013662 Sechium edule HOM05D004557 ORTHO05D005258 1.4e-11 75.5 282 24.5
Ca_15841_v3 Cicer arietinum L. HOM05D002542 ORTHO05D010145 5.4e-11 73.6 210 26.7
TAR383G0817 Trochodendron aralioides HOM05D004557 ORTHO05D005258 7.1e-11 73.2 269 27.9
Aa31LG11G13510 Aethionema arabicum HOM05D004557 ORTHO05D005258 1.6e-10 72.0 252 26.2
Carub.0008s1244 Capsella rubella HOM05D004557 ORTHO05D005258 3.5e-10 70.9 252 26.2
Oeu037989.1 Olea europaea HOM05D004557 ORTHO05D005258 4.6e-10 70.5 171 30.4
Atru.chr7.1871 Acer truncatum HOM05D004557 ORTHO05D005258 1.7e-09 68.6 128 35.2
Phvul.009G080800 Phaseolus vulgaris HOM05D004557 ORTHO05D005258 1.7e-09 68.6 273 23.4
Manes.03G052300 Manihot esculenta HOM05D004557 ORTHO05D005258 3.9e-09 67.4 162 32.7
Eucgr.J00345 Eucalyptus grandis HOM05D004557 ORTHO05D005258 8.6e-09 66.2 201 27.4
Eucgr.L01064 Eucalyptus grandis HOM05D004557 ORTHO05D005258 1.9e-08 65.1 201 27.9
Glyma.20G016500 Glycine max HOM05D004557 ORTHO05D005258 2.5e-08 64.7 243 24.3
Rhsim09G0050500 Rhododendron simsii HOM05D004557 ORTHO05D005258 4.3e-08 63.9 164 31.7
TWI34G1499 Tripterygium wilfordii HOM05D004557 ORTHO05D005258 5.6e-08 63.5 119 29.4
SGA_v2.0_scaffold64G21858 Striga asiatica HOM05D000448 ORTHO05D000291 7.3e-08 63.2 115 33.9
CDE05G1912 Ceratophyllum demersum HOM05D004557 ORTHO05D005258 4.7e-07 60.5 221 26.2
unitig_750.g28413 Utricularia gibba HOM05D004557 ORTHO05D005258 1.4e-06 58.9 139 29.5
Nn6g35588 Nelumbo nucifera HOM05D004557 ORTHO05D005258 2.4e-06 58.2 323 20.7
Gohir.D08G268666 Gossypium hirsutum HOM05D004557 ORTHO05D005258 8.9e-06 56.2 87 37.9


User provided reference genes

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