Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 0.0e+00 1149.0 584 100.0
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 6.0e-311 1070.1 584 93.3
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 1.4e-302 1042.3 586 91.6
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.6e-298 1028.9 579 90.5
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 2.7e-298 1028.1 579 90.3
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.2e-296 1020.8 586 89.6
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 5.6e-280 967.2 575 85.6
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 1.2e-279 966.1 576 85.2
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 3.6e-279 964.5 577 85.8
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 2.0e-274 948.7 574 84.5
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 2.0e-274 948.7 579 83.6
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 8.6e-273 943.3 580 82.9
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 1.5e-272 942.6 576 84.4
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 3.3e-272 941.4 611 80.4
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 1.6e-271 939.1 583 82.3
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.1e-270 936.4 576 82.5
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 1.8e-270 935.6 584 81.7
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 2.3e-270 935.3 570 84.0
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 4.4e-269 931.0 537 86.6
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 5.8e-269 930.6 566 83.9
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.7e-268 929.1 563 83.7
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 2.9e-268 928.3 589 80.6
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 4.9e-268 927.5 528 87.7
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 6.4e-268 927.2 574 82.6
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 7.8e-266 920.2 571 82.5
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 1.0e-265 919.8 570 82.1
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 8.6e-265 916.8 576 81.6
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 7.3e-264 913.7 577 80.9
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.4e-262 909.4 569 81.7
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 1.4e-262 909.4 603 77.1
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.4e-262 909.4 576 80.2
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 1.4e-262 909.4 579 79.6
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 1.8e-262 909.1 562 81.5
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 2.3e-262 908.7 568 81.7
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 3.1e-262 908.3 561 81.3
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 5.2e-262 907.5 560 82.1
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 8.9e-262 906.7 553 82.8
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.0e-261 905.6 570 80.5
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 3.4e-261 904.8 530 85.5
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 4.4e-261 904.4 562 82.6
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 5.8e-261 904.0 565 80.7
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 2.2e-260 902.1 582 79.4
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 2.2e-260 902.1 562 81.3
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 3.7e-260 901.4 573 79.4
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 4.9e-260 901.0 530 85.3
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 6.4e-260 900.6 558 81.4
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 1.1e-259 899.8 555 81.6
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 1.9e-259 899.0 562 81.0
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 1.9e-259 899.0 569 80.0
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 1.9e-259 899.0 569 80.0
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 1.9e-259 899.0 547 82.6
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 1.9e-259 899.0 558 81.7
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 3.2e-259 898.3 519 85.9
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 4.1e-259 897.9 555 81.1
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 4.1e-259 897.9 555 81.1
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 4.1e-259 897.9 555 81.1
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 4.1e-259 897.9 573 79.8
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 5.4e-259 897.5 582 79.7
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 5.4e-259 897.5 561 79.7
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 1.6e-258 896.0 553 82.5
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-258 896.0 556 81.3
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 3.5e-258 894.8 555 80.7
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 4.6e-258 894.4 524 84.9
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.0e-257 893.3 550 82.4
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 1.0e-257 893.3 566 80.2
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.7e-257 892.5 616 75.3
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 1.7e-257 892.5 538 84.6
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 2.3e-257 892.1 561 81.3
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 3.9e-257 891.3 539 84.0
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 3.9e-257 891.3 558 81.5
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 3.9e-257 891.3 531 84.4
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 5.1e-257 891.0 580 77.9
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 1.5e-256 889.4 558 81.2
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.5e-256 889.4 563 81.0
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 1.9e-256 889.0 566 79.9
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 9.5e-256 886.7 583 78.2
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 4.7e-255 884.4 551 82.2
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 8.1e-255 883.6 519 85.2
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.1e-254 883.2 559 80.7
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 1.8e-254 882.5 554 81.8
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 8.4e-252 873.6 539 81.4
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 7.1e-251 870.5 559 79.1
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 9.2e-251 870.2 522 83.5
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 2.1e-250 869.0 587 76.1
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 3.5e-250 868.2 565 78.8
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 4.6e-250 867.8 576 78.6
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 3.0e-249 865.1 538 80.9
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.9e-248 862.4 556 79.0
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.3e-248 861.7 534 80.1
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 4.3e-248 861.3 555 78.9
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 1.6e-247 859.4 567 76.7
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 2.4e-246 855.5 540 80.2
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 4.0e-246 854.7 524 81.9
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 5.3e-246 854.4 555 78.0
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 7.6e-245 850.5 522 82.0
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 3.2e-243 845.1 559 77.8
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 2.1e-242 842.4 563 77.3
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 3.1e-238 828.6 579 77.0
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 1.5e-237 826.2 470 87.2
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 9.3e-235 817.0 468 87.6
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.6e-234 816.2 492 83.9
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 1.6e-234 816.2 551 75.5
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 2.5e-232 808.9 564 73.6
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 9.6e-232 807.0 529 77.5
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 4.6e-226 788.1 486 82.3
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 3.3e-224 781.9 563 69.8
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 9.0e-222 773.9 496 75.6
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 8.4e-220 767.3 507 73.6
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 3.9e-217 758.4 503 73.4
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 4.5e-213 745.0 451 81.4
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 1.3e-212 743.4 455 81.1
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 3.1e-206 722.2 405 89.6
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.5e-205 719.9 543 70.3
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.8e-201 706.4 565 66.7
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 7.4e-200 701.0 547 65.4
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.5e-197 693.3 570 66.5
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 1.0e-193 680.6 570 65.4
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 2.2e-191 672.9 506 65.8
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.7e-188 663.3 460 72.2
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 7.5e-184 647.9 557 65.0
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 4.1e-182 642.1 520 63.5
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 3.5e-181 639.0 549 58.3
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.2e-167 593.2 564 58.5
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 1.8e-166 590.1 318 91.5
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 2.5e-163 579.7 510 62.4
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 2.3e-161 573.2 529 58.2
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 5.4e-158 562.0 344 84.3
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 6.6e-156 555.1 500 59.0
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.1e-155 554.3 499 58.7
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.5e-155 553.9 500 58.8
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.1e-153 547.7 457 61.1
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 3.2e-134 483.0 331 71.3
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 9.6e-131 471.5 497 52.3
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 1.1e-121 441.4 500 46.8
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 3.4e-120 436.4 600 46.7
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 1.6e-101 374.4 531 39.4
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 9.0e-97 358.6 428 49.1
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 8.5e-95 352.1 575 44.2
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.7e-91 339.3 346 55.8
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 1.0e-84 318.5 443 39.7
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.3e-71 275.0 187 70.1
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.7e-69 267.3 156 86.5
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 8.0e-69 265.8 504 40.1
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.7e-61 240.7 325 45.8
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.7e-55 221.5 423 38.8
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 4.6e-48 196.8 145 70.3
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 8.0e-45 186.0 105 85.7
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 3.5e-40 170.6 106 84.9
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 3.5e-40 170.6 149 59.7
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 5.6e-38 163.3 111 76.6
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 1.6e-32 145.2 80 87.5
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.2e-29 135.6 102 74.5
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.5e-27 128.6 77 84.4
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 9.6e-22 109.4 65 84.6
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 1.1e-20 105.9 86 64.0
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 4.9e-18 97.1 71 71.8
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 1.1e-17 95.9 92 44.6
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 6.0e-16 90.1 54 81.5
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 1.7e-15 88.6 75 64.0
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 2.5e-14 84.7 50 82.0
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 6.9e-12 76.6 53 71.7
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 4.4e-11 73.9 98 48.0
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.8e-11 73.6 64 59.4
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 1.7e-10 72.0 43 79.1
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 2.7e-08 64.7 155 40.0
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 3.5e-08 64.3 57 57.9
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 6.0e-08 63.5 52 57.7
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 2.3e-07 61.6 52 59.6
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 3.3e-06 57.8 46 54.3


User provided reference genes

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