Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 1.0e-287 992.6 484 100.0
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 4.5e-267 924.1 484 93.2
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 1.6e-264 915.6 484 92.1
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 4.6e-264 914.1 484 91.1
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 3.0e-263 911.4 484 90.7
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 1.2e-259 899.4 484 89.3
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 2.7e-248 861.7 482 85.9
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 1.3e-245 852.8 482 84.9
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 8.2e-245 850.1 482 84.4
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 2.4e-244 848.6 482 83.8
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 4.1e-244 847.8 482 85.1
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 1.2e-243 846.3 482 83.6
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 1.5e-243 845.9 482 85.5
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 1.5e-243 845.9 482 85.1
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 3.4e-243 844.7 484 84.7
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 1.9e-241 839.0 482 84.2
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.6e-240 835.9 482 84.0
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 3.6e-240 834.7 482 83.6
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 7.9e-240 833.6 482 83.6
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 5.2e-239 830.9 482 83.6
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 1.1e-238 829.7 482 83.2
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 2.0e-238 828.9 482 82.8
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 2.6e-238 828.6 482 83.2
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 5.7e-238 827.4 482 83.0
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 5.7e-238 827.4 483 83.2
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 1.3e-237 826.2 480 83.8
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 2.2e-237 825.5 482 81.7
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 2.2e-237 825.5 482 83.2
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 8.2e-237 823.5 483 82.2
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 1.1e-236 823.2 513 78.6
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 3.1e-236 821.6 483 82.8
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 3.1e-236 821.6 483 82.8
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 7.7e-235 817.0 483 81.6
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 1.6e-232 809.3 483 82.2
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 2.1e-232 808.9 483 80.7
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 2.7e-232 808.5 482 80.9
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 1.8e-231 805.8 482 81.1
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 2.3e-231 805.4 485 81.0
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 4.0e-231 804.7 482 80.9
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 8.8e-231 803.5 482 80.3
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 1.2e-230 803.1 482 80.7
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 3.3e-230 801.6 482 80.1
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 3.3e-230 801.6 482 79.9
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 5.7e-230 800.8 482 80.5
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 5.7e-230 800.8 482 80.5
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 7.5e-230 800.4 482 80.7
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 3.7e-229 798.1 482 80.3
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 4.8e-229 797.7 482 79.9
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 4.8e-229 797.7 482 80.3
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 6.3e-229 797.3 483 79.7
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 8.2e-229 797.0 488 79.5
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 8.2e-229 797.0 483 79.7
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 1.1e-228 796.6 482 80.1
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 3.1e-228 795.0 488 79.3
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 4.1e-228 794.7 480 80.8
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 1.2e-227 793.1 483 79.7
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 1.6e-227 792.7 482 80.3
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 4.5e-227 791.2 482 79.0
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 4.5e-227 791.2 484 80.6
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 5.9e-227 790.8 482 79.3
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 1.0e-226 790.0 482 79.9
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 1.0e-226 790.0 490 80.4
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 5.0e-226 787.7 481 80.0
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.5e-225 786.2 483 78.7
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 7.2e-225 783.9 483 78.7
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 2.7e-224 781.9 482 80.5
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 1.0e-223 780.0 483 78.7
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 1.4e-223 779.6 483 78.9
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 1.4e-223 779.6 482 78.6
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 3.0e-223 778.5 481 77.3
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 3.0e-223 778.5 483 78.7
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 4.0e-223 778.1 481 77.5
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 8.8e-223 776.9 481 77.5
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 8.8e-223 776.9 482 77.8
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 1.5e-222 776.2 483 78.1
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 4.8e-221 771.2 484 77.1
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 5.0e-218 761.1 482 75.9
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 1.5e-217 759.6 419 86.4
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 1.4e-215 753.1 484 76.7
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 3.0e-215 751.9 484 76.7
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 8.8e-215 750.4 483 76.8
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 1.5e-214 749.6 485 76.5
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 1.5e-214 749.6 429 84.8
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 2.6e-214 748.8 488 76.4
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 4.4e-214 748.0 485 76.7
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 2.2e-213 745.7 483 76.6
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 2.2e-213 745.7 482 76.3
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 3.1e-212 741.9 481 77.1
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 1.3e-210 736.5 487 75.2
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 1.3e-210 736.5 487 75.2
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 1.7e-210 736.1 490 75.5
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 7.3e-209 730.7 488 75.2
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 4.7e-208 728.0 488 74.4
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 1.4e-207 726.5 488 74.6
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 2.0e-206 722.6 393 86.5
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 7.5e-206 720.7 484 74.0
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 7.5e-206 720.7 395 85.8
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 3.5e-203 711.8 485 73.4
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 2.5e-201 705.7 447 77.2
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 8.9e-199 697.2 454 76.2
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 1.1e-193 680.2 430 75.8
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 1.1e-193 680.2 425 75.3
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 1.2e-190 670.2 484 68.2
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 9.9e-190 667.2 488 69.9
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 9.9e-190 667.2 436 74.1
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 4.9e-189 664.8 383 82.5
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 1.9e-188 662.9 389 79.2
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 2.1e-176 622.9 392 75.0
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.5e-174 616.7 431 71.5
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 9.6e-169 597.4 388 70.1
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 5.8e-166 588.2 397 67.5
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 9.3e-164 580.9 479 62.4
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 4.5e-158 562.0 288 92.4
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 2.4e-156 556.2 288 92.7
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.0e-138 497.7 343 72.6
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 1.4e-135 487.3 365 67.4
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.1e-100 371.3 266 70.3
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 3.6e-99 366.3 237 74.3
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 5.6e-84 315.8 171 85.4
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.1e-60 238.4 134 85.1
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 3.3e-60 236.9 194 61.3
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 3.6e-59 233.4 130 83.1
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 4.7e-59 233.0 136 81.6
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 8.7e-53 212.2 157 65.6
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 5.3e-50 203.0 140 74.3
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 4.6e-38 163.3 95 84.2
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 2.9e-32 144.1 105 66.7
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 1.5e-12 78.6 59 64.4
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 3.3e-12 77.4 284 26.4
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 7.2e-07 59.7 125 31.2
PSO782G1764 Papaver somniferum HOM05D000776 ORTHO05D001624 3.6e-06 57.4 172 25.6
FAN08G0150 Fragaria x ananassa HOM05D000776 ORTHO05D001624 4.7e-06 57.0 126 27.8
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 4.7e-06 57.0 125 30.4
PSO478G2983 Papaver somniferum HOM05D000776 ORTHO05D001624 4.7e-06 57.0 172 25.0


User provided reference genes

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